prot_Ecto-sp9_F_contig8746.16927.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig8746.16927.1
Unique Name	prot_Ecto-sp9_F_contig8746.16927.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	90

Homology

[Close]

BLAST of mRNA_Ecto-sp9_F_contig8746.16927.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB05_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 9.950e-45
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0

Query:    1 LWLWVLLWGVLTSGVEPSQRAAGKAGSCLDLQSAPGCTARLEKGSAPSATAPSTGDDTIAIDSRDPTNDDTHRSQRKTPPGTTTAISHNG 90
            LWLWVLLWGVLTSGVEPSQRAAGKAGSCLDLQSAPGCTARLEKGSAPS TAPST DDTIAI +R+PTN+D HRSQRKTPPGTTTAISHNG
Sbjct:   28 LWLWVLLWGVLTSGVEPSQRAAGKAGSCLDLQSAPGCTARLEKGSAPSTTAPSTSDDTIAIGNREPTNNDIHRSQRKTPPGTTTAISHNG 117

[Close]

BLAST of mRNA_Ecto-sp9_F_contig8746.16927.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA3_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.340e-41
Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = 0

Query:    1 LWLWVLLWGVLTSGVEPSQRAAGKAGSCLDLQSAPGCTARLEKGSAPSATAPSTGDDTIAIDSRDPTNDDTHRSQRKTPPGTTTAISHN 89
            LWLWVLLWGVLTSGVEPS+RAAGKAGSCLDLQSA GCTARLEKGSAP+ TAPST DDTIA DSRDPTN DTHRSQRKT  GTTTAISHN
Sbjct:   28 LWLWVLLWGVLTSGVEPSERAAGKAGSCLDLQSALGCTARLEKGSAPATTAPSTNDDTIAFDSRDPTNADTHRSQRKTQAGTTTAISHN 116

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig8746.16927.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig8746.16927.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	9.950e-45	92.22	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	2.340e-41	89.89	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..12
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..20
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 21..90
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..17 score: 0.823

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig8746	contig	Ecto-sp9_F_contig8746:3646..4830 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig8746.16927.1	mRNA_Ecto-sp9_F_contig8746.16927.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig8746 3646..4831 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig8746.16927.1 ID=prot_Ecto-sp9_F_contig8746.16927.1|Name=mRNA_Ecto-sp9_F_contig8746.16927.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=90bp
LWLWVLLWGVLTSGVEPSQRAAGKAGSCLDLQSAPGCTARLEKGSAPSAT
APSTGDDTIAIDSRDPTNDDTHRSQRKTPPGTTTAISHNG