mRNA_Ecto-sp9_F_contig8746.16927.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8746.16927.1
Unique NamemRNA_Ecto-sp9_F_contig8746.16927.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8746.16927.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB05_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 9.950e-45
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 LWLWVLLWGVLTSGVEPSQRAAGKAGSCLDLQSAPGCTARLEKGSAPSATAPSTGDDTIAIDSRDPTNDDTHRSQRKTPPGTTTAISHNG 270
            LWLWVLLWGVLTSGVEPSQRAAGKAGSCLDLQSAPGCTARLEKGSAPS TAPST DDTIAI +R+PTN+D HRSQRKTPPGTTTAISHNG
Sbjct:   28 LWLWVLLWGVLTSGVEPSQRAAGKAGSCLDLQSAPGCTARLEKGSAPSTTAPSTSDDTIAIGNREPTNNDIHRSQRKTPPGTTTAISHNG 117
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BLAST of mRNA_Ecto-sp9_F_contig8746.16927.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA3_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.340e-41
Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 LWLWVLLWGVLTSGVEPSQRAAGKAGSCLDLQSAPGCTARLEKGSAPSATAPSTGDDTIAIDSRDPTNDDTHRSQRKTPPGTTTAISHN 267
            LWLWVLLWGVLTSGVEPS+RAAGKAGSCLDLQSA GCTARLEKGSAP+ TAPST DDTIA DSRDPTN DTHRSQRKT  GTTTAISHN
Sbjct:   28 LWLWVLLWGVLTSGVEPSERAAGKAGSCLDLQSALGCTARLEKGSAPATTAPSTNDDTIAFDSRDPTNADTHRSQRKTQAGTTTAISHN 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8746.16927.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.950e-4592.22protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.340e-4189.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8746contigEcto-sp9_F_contig8746:3646..4831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue1.8e-38
Seed eggNOG ortholog2880.D8LB05
Preferred nameTMEM131
GOsGO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007162,GO:0008150,GO:0008285,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0016020,GO:0022407,GO:0022408,GO:0023051,GO:0023057,GO:0030111,GO:0030155,GO:0030178,GO:0032944,GO:0032945,GO:0033081,GO:0033083,GO:0033084,GO:0033085,GO:0033087,GO:0033088,GO:0042127,GO:0042129,GO:0042130,GO:0044424,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050670,GO:0050672,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0051093,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0060828,GO:0065007,GO:0070663,GO:0070664,GO:0071944,GO:0090090,GO:1902105,GO:1902106,GO:1903037,GO:1903038,GO:1903706,GO:1903707,GO:2000026
EggNOG free text desc.negative regulation of immature T cell proliferation in thymus
EggNOG OGsKOG3620@1,KOG3620@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.233259-CDS-Ecto-sp9_F_contig8746:3645..37411622930922.233259-CDS-Ecto-sp9_F_contig8746:3645..3741Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8746 3646..3741 +
1692278950.0603213-CDS-Ecto-sp9_F_contig8746:3645..37411692278950.0603213-CDS-Ecto-sp9_F_contig8746:3645..3741Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8746 3646..3741 +
1622930922.2515473-CDS-Ecto-sp9_F_contig8746:4656..48301622930922.2515473-CDS-Ecto-sp9_F_contig8746:4656..4830Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8746 4657..4830 +
1692278950.073007-CDS-Ecto-sp9_F_contig8746:4656..48301692278950.073007-CDS-Ecto-sp9_F_contig8746:4656..4830Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8746 4657..4830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8746.16927.1prot_Ecto-sp9_F_contig8746.16927.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8746 3646..4830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8746.16927.1

>prot_Ecto-sp9_F_contig8746.16927.1 ID=prot_Ecto-sp9_F_contig8746.16927.1|Name=mRNA_Ecto-sp9_F_contig8746.16927.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=90bp
LWLWVLLWGVLTSGVEPSQRAAGKAGSCLDLQSAPGCTARLEKGSAPSAT
APSTGDDTIAIDSRDPTNDDTHRSQRKTPPGTTTAISHNG
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mRNA from alignment at Ecto-sp9_F_contig8746:3646..4831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8746.16927.1 ID=mRNA_Ecto-sp9_F_contig8746.16927.1|Name=mRNA_Ecto-sp9_F_contig8746.16927.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1186bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8746:3646..4831+ (Ectocarpus species9 EcSCA_722f female)
CTCTGGCTCTGGGTGCTTCTTTGGGGCGTGCTGACGTCTGGGGTGGAGCC
CTCCCAGCGCGCGGCGGGCAAAGCCGGATCATGCTTGGATCTACAGGTAA
TAGTCTAGTGCTGACTGCGCTCTGTGCTGGGTTGAACATTCCACGTGCTC
TTGCATTAGGGCGCGTGTTGGCCATCATGCCCACGCCCGTGGTTGGTTGT
CTACGCACTACTGTAATACCCACACACAGGACGGACGAAATTACTCATTC
AGAGTGGAAACGGTCCGCTCTGTCTGTTTGGAACTCTGGCATATGGGGGT
GAAGATCGTACGTGCGAGGCACACAGCACGACGTGCACGGGCAAACGCGC
CTTGGATCGTACAGCAGTCTAGCCTCTGCATATCGCATGTATTTGGCTAC
CCACCGTCCGGAGATACCCTTATTGGACGTCCGACATTTGATGACGCTCA
CATAAAACTGCCGGGTTTTGCCTATTCCATCACGTGTTTGGTGGTTGCCT
GCTGTGTCTAGGACCATAAAGGGTTTAGTGAAACCTCGACTTCGTAGAAA
TAATTAGTATTCGTTGACTCTGGGGGGGTCCCGACGTGCCGCCTGCTGCG
AGAAAATAACTGCATTTCGGCTCGAGAGAACGGCGCATGGTTGCGAGGAG
GCCAAGGAAGGAGGATCAAGATCCCTATGGGTGGATCCGGGGGGCTGGCT
CTCGGGTAGAGAGACCAACCTCAAGTGCCTCCATCCGCCACCACGCGGCC
TCTTCAAGACCGCCGACCAGCCCAAATGGCGGACGAGCAGGACAACTACT
GAGCTGTGAACGCTAACCGCCACATACACAATCGCGATCACTGCACGCTT
GTGCACGAAAGTGGCAAACGCGTTACAACCCTTGTGTCGGGGGAACATTT
CGCAGGTGTGTTGAAACCCTTTTGTGTACCCCCGCTGATCCACTACCCAT
GCTTCGTTTGTCTGACCCCCCCACCACCTATATATATATATATATATTTT
TTTTTTGGCAGTCCGCGCCTGGCTGCACCGCTAGACTCGAGAAAGGCTCT
GCGCCCAGTGCAACGGCCCCGAGCACTGGCGACGACACCATCGCGATTGA
CAGCCGGGATCCAACCAACGACGACACCCACCGCAGCCAGAGGAAAACCC
CACCTGGGACAACTACTGCCATCAGTCACAACGGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8746:3646..4831+

>mRNA_Ecto-sp9_F_contig8746.16927.1 ID=mRNA_Ecto-sp9_F_contig8746.16927.1|Name=mRNA_Ecto-sp9_F_contig8746.16927.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8746:3646..4831+ (Ectocarpus species9 EcSCA_722f female)
CTCTGGCTCTGGGTGCTTCTTTGGGGCGTGCTGACGTCTGGGGTGGAGCC
CTCCCAGCGCGCGGCGGGCAAAGCCGGATCATGCTTGGATCTACAGCTCT
GGCTCTGGGTGCTTCTTTGGGGCGTGCTGACGTCTGGGGTGGAGCCCTCC
CAGCGCGCGGCGGGCAAAGCCGGATCATGCTTGGATCTACAGTCCGCGCC
TGGCTGCACCGCTAGACTCGAGAAAGGCTCTGCGCCCAGTGCAACGGCCC
CGAGCACTGGCGACGACACCATCGCGATTGACAGCCGGGATCCAACCAAC
GACGACACCCACCGCAGCCAGAGGAAAACCCCACCTGGGACAACTACTGC
CATCAGTCACAACGGGTCCGCGCCTGGCTGCACCGCTAGACTCGAGAAAG
GCTCTGCGCCCAGTGCAACGGCCCCGAGCACTGGCGACGACACCATCGCG
ATTGACAGCCGGGATCCAACCAACGACGACACCCACCGCAGCCAGAGGAA
AACCCCACCTGGGACAACTACTGCCATCAGTCACAACGGG
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