prot_Ecto-sp9_F_contig8738.16920.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8738.16920.1
Unique Nameprot_Ecto-sp9_F_contig8738.16920.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length236
Homology
BLAST of mRNA_Ecto-sp9_F_contig8738.16920.1 vs.
Match: PseudoU_synth_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX6_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 5.310e-101
Identity = 167/181 (92.27%), Postives = 170/181 (93.92%), Query Frame = 0
Query:    1 MAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVTVSAKDLEAFAAFKRALKGSNDQHYSVVDHGEQGRRREKELKXXXXXX----GTGDSQGTRPGEEPAGGGGDEDMTWREGLRRLRNMGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR 177
            MAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVT+SAKDL+AFAAFK ALKGSNDQHYSVVDHGEQGRRREK   XXXXXX    GTGDSQGTRPGEE AG GGDE+MTWREGLRRLR MGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR
Sbjct:  549 MAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVTISAKDLDAFAAFKHALKGSNDQHYSVVDHGEQGRRREKXXXXXXXXXXXXGGTGDSQGTRPGEETAGRGGDENMTWREGLRRLRGMGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR 729          
BLAST of mRNA_Ecto-sp9_F_contig8738.16920.1 vs.
Match: tRNA (pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT9_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 5.910e-92
Identity = 142/177 (80.23%), Postives = 145/177 (81.92%), Query Frame = 0
Query:    1 MAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVTVSAKDLEAFAAFKRALKGSNDQHYSVVDHGEQGRRREKELKXXXXXXGTGDSQGTRPGEEPAGGGGDEDMTWREGLRRLRNMGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR 177
            MAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVTVSAKDL+AFAAFKRALKGSNDQHYSVVDHGEQGRR                                +DMTWREGLRRLR+MGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR
Sbjct:   39 MAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVTVSAKDLDAFAAFKRALKGSNDQHYSVVDHGEQGRR--------------------------------QDMTWREGLRRLRDMGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR 183          
BLAST of mRNA_Ecto-sp9_F_contig8738.16920.1 vs.
Match: tRNA (pseudouridine synthase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF07_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.490e-5
Identity = 47/186 (25.27%), Postives = 81/186 (43.55%), Query Frame = 0
Query:    1 MAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAG-VTVSAKDLEAFAAFKRALKGSNDQHYSVVDHGEQGRRREKELKXXXXXXGTGDSQGTRPGEEPAGGGGDEDMT-------WREGLRRL------RNMGLGVGQVLGRKGHMPMERRQQGLHYNELVEGL 172
            MAP+ PL+LHGC ++++ F ++ +NL+ +    E  WE+ ++ + R+L  +  LA    V+  D+ +F                     EQ R++EK LK               PG++ +    D +M        W E L R+      R    G  ++L    H+P+  R +G  Y E V+ +
Sbjct:   70 MAPELPLVLHGCGYQNVTFGFSVKNLWAMSCDFERQWEEQSLASERILGAISSLATEAQVTEGDINSFITLAT----------------EQRRKKEKRLKTKP------------PGKQSSSTRMDANMLSDKTVIPWGEALSRIESALCIRPSPSGPKEIL----HVPLMERSRGTTYEEKVQSI 223          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8738.16920.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
PseudoU_synth_15.310e-10192.27domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
tRNA5.910e-9280.23pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
tRNA3.490e-525.27pseudouridine synthase (Fragment) n=1 Tax=Attheya ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8738contigEcto-sp9_F_contig8738:3002..5580 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8738.16920.1mRNA_Ecto-sp9_F_contig8738.16920.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8738 2943..5608 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8738.16920.1 ID=prot_Ecto-sp9_F_contig8738.16920.1|Name=mRNA_Ecto-sp9_F_contig8738.16920.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=236bp
MAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNN
LEYLAGVTVSAKDLEAFAAFKRALKGSNDQHYSVVDHGEQGRRREKELKQ
QQQQGGTGDSQGTRPGEEPAGGGGDEDMTWREGLRRLRNMGLGVGQVLGR
KGHMPMERRQQGLHYNELVEGLGGKKRPASGHEGCGNGVRGNGRLLQCHG
RPGNSGIISSPLQTSIFDDLHVGVHDDFVRLCFRR*
back to top