mRNA_Ecto-sp9_F_contig8738.16920.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8738.16920.1
Unique NamemRNA_Ecto-sp9_F_contig8738.16920.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8738.16920.1 vs.
Match: PseudoU_synth_1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX6_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 5.270e-109
Identity = 176/190 (92.63%), Postives = 179/190 (94.21%), Query Frame = 2 
Query:    2 RCPGKPHYDMAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVTVSAKDLEAFAAFKRALKGSNDQHYSVVDHGEQGRRREKELKXXXXXX----GTGDSQGTRPGEEPAGGGGDEDMTWREGLRRLRNMGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR 559
            RCPGKPHYDMAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVT+SAKDL+AFAAFK ALKGSNDQHYSVVDHGEQGRRREK   XXXXXX    GTGDSQGTRPGEE AG GGDE+MTWREGLRRLR MGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR
Sbjct:  540 RCPGKPHYDMAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVTISAKDLDAFAAFKHALKGSNDQHYSVVDHGEQGRRREKXXXXXXXXXXXXGGTGDSQGTRPGEETAGRGGDENMTWREGLRRLRGMGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR 729
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BLAST of mRNA_Ecto-sp9_F_contig8738.16920.1 vs.
Match: tRNA (pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT9_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 3.680e-100
Identity = 151/186 (81.18%), Postives = 154/186 (82.80%), Query Frame = 2 
Query:    2 RCPGKPHYDMAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVTVSAKDLEAFAAFKRALKGSNDQHYSVVDHGEQGRRREKELKXXXXXXGTGDSQGTRPGEEPAGGGGDEDMTWREGLRRLRNMGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR 559
            RCPGKPHYDMAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVTVSAKDL+AFAAFKRALKGSNDQHYSVVDHGEQGRR                                +DMTWREGLRRLR+MGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR
Sbjct:   30 RCPGKPHYDMAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAGVTVSAKDLDAFAAFKRALKGSNDQHYSVVDHGEQGRR--------------------------------QDMTWREGLRRLRDMGLGVGQVLGRKGHMPMERRQQGLHYNELVEGLGGKKR 183
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BLAST of mRNA_Ecto-sp9_F_contig8738.16920.1 vs.
Match: tRNA (pseudouridine synthase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF07_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.090e-9
Identity = 52/193 (26.94%), Postives = 87/193 (45.08%), Query Frame = 2 
Query:    8 PGKPHYDMAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYLAG-VTVSAKDLEAFAAFKRALKGSNDQHYSVVDHGEQGRRREKELKXXXXXXGTGDSQGTRPGEEPAGGGGDEDMT-------WREGLRRL------RNMGLGVGQVLGRKGHMPMERRQQGLHYNELVEGL 544
            PGKP Y+MAP+ PL+LHGC ++++ F ++ +NL+ +    E  WE+ ++ + R+L  +  LA    V+  D+ +F                     EQ R++EK LK               PG++ +    D +M        W E L R+      R    G  ++L    H+P+  R +G  Y E V+ +
Sbjct:   63 PGKPSYNMAPELPLVLHGCGYQNVTFGFSVKNLWAMSCDFERQWEEQSLASERILGAISSLATEAQVTEGDINSFITLAT----------------EQRRKKEKRLKTKP------------PGKQSSSTRMDANMLSDKTVIPWGEALSRIESALCIRPSPSGPKEIL----HVPLMERSRGTTYEEKVQSI 223
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BLAST of mRNA_Ecto-sp9_F_contig8738.16920.1 vs.
Match: tRNA (pseudouridine synthase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WIK8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.920e-5
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 2 
Query:    2 RCPGKPHYDMAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNNLEYL 190
            + P KP Y +APD PL+LH CRF S+NF Y+P  L  L     +L+E   I +ARL + L+ L
Sbjct:  332 KYPRKPQYAIAPDHPLVLHDCRFDSINFDYSPLALSHLYREFSALYELHKIKSARLESWLDEL 394
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8738.16920.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
PseudoU_synth_15.270e-10992.63domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
tRNA3.680e-10081.18pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
tRNA9.090e-926.94pseudouridine synthase (Fragment) n=1 Tax=Attheya ... [more]
tRNA4.920e-546.03pseudouridine synthase n=1 Tax=Albugo laibachii Nc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8738contigEcto-sp9_F_contig8738:2943..5608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score281.6
Seed ortholog evalue3.5e-73
Seed eggNOG ortholog2880.D7FHT9
KEGG koko:K01855
GOsGO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481
EggNOG free text desc.mRNA pseudouridine synthesis
EggNOG OGsCOG0101@1,KOG2554@2759
EC5.4.99.45
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons5
Model size795
Cds size708
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.9909585-UTR-Ecto-sp9_F_contig8738:2942..30011622930920.9909585-UTR-Ecto-sp9_F_contig8738:2942..3001Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8738 2943..3001 -
1692278949.4143815-UTR-Ecto-sp9_F_contig8738:2942..30011692278949.4143815-UTR-Ecto-sp9_F_contig8738:2942..3001Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8738 2943..3001 -
1622930921.0998108-UTR-Ecto-sp9_F_contig8738:5580..56081622930921.0998108-UTR-Ecto-sp9_F_contig8738:5580..5608Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8738 5581..5608 -
1692278949.4785113-UTR-Ecto-sp9_F_contig8738:5580..56081692278949.4785113-UTR-Ecto-sp9_F_contig8738:5580..5608Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8738 5581..5608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930921.0140023-CDS-Ecto-sp9_F_contig8738:3001..31791622930921.0140023-CDS-Ecto-sp9_F_contig8738:3001..3179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8738 3002..3179 -
1692278949.4280164-CDS-Ecto-sp9_F_contig8738:3001..31791692278949.4280164-CDS-Ecto-sp9_F_contig8738:3001..3179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8738 3002..3179 -
1622930921.0312464-CDS-Ecto-sp9_F_contig8738:4075..42291622930921.0312464-CDS-Ecto-sp9_F_contig8738:4075..4229Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8738 4076..4229 -
1692278949.4388123-CDS-Ecto-sp9_F_contig8738:4075..42291692278949.4388123-CDS-Ecto-sp9_F_contig8738:4075..4229Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8738 4076..4229 -
1622930921.0494232-CDS-Ecto-sp9_F_contig8738:4441..46311622930921.0494232-CDS-Ecto-sp9_F_contig8738:4441..4631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8738 4442..4631 -
1692278949.4491487-CDS-Ecto-sp9_F_contig8738:4441..46311692278949.4491487-CDS-Ecto-sp9_F_contig8738:4441..4631Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8738 4442..4631 -
1622930921.0686395-CDS-Ecto-sp9_F_contig8738:4980..50941622930921.0686395-CDS-Ecto-sp9_F_contig8738:4980..5094Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8738 4981..5094 -
1692278949.4599938-CDS-Ecto-sp9_F_contig8738:4980..50941692278949.4599938-CDS-Ecto-sp9_F_contig8738:4980..5094Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8738 4981..5094 -
1622930921.0849214-CDS-Ecto-sp9_F_contig8738:5508..55801622930921.0849214-CDS-Ecto-sp9_F_contig8738:5508..5580Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8738 5509..5580 -
1692278949.4694862-CDS-Ecto-sp9_F_contig8738:5508..55801692278949.4694862-CDS-Ecto-sp9_F_contig8738:5508..5580Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8738 5509..5580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8738.16920.1prot_Ecto-sp9_F_contig8738.16920.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8738 3002..5580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8738.16920.1

>prot_Ecto-sp9_F_contig8738.16920.1 ID=prot_Ecto-sp9_F_contig8738.16920.1|Name=mRNA_Ecto-sp9_F_contig8738.16920.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=236bp
MAPDGPLLLHGCRFRSLNFQYTPENLYCLQEHLESLWEDAAITAARLLNN
LEYLAGVTVSAKDLEAFAAFKRALKGSNDQHYSVVDHGEQGRRREKELKQ
QQQQGGTGDSQGTRPGEEPAGGGGDEDMTWREGLRRLRNMGLGVGQVLGR
KGHMPMERRQQGLHYNELVEGLGGKKRPASGHEGCGNGVRGNGRLLQCHG
RPGNSGIISSPLQTSIFDDLHVGVHDDFVRLCFRR*
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mRNA from alignment at Ecto-sp9_F_contig8738:2943..5608-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8738.16920.1 ID=mRNA_Ecto-sp9_F_contig8738.16920.1|Name=mRNA_Ecto-sp9_F_contig8738.16920.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2666bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8738:2943..5608- (Ectocarpus species9 EcSCA_722f female)
AAGATGCCCGGGGAAGCCTCACTATGACATGGCGCCGGACGGGCCCCTGC
TGCTCCACGGATGCCGGTTTCGATCTCTCAACTTCCAGTACACGCCGGAG
GTAATGTCAAAGTTGAATCTCAACCTATACCTGTGTCTTGTTGCCATCGA
GATTTTGTTTCAAAGTAAACATGACCTATTGTAACCGTTTTTTTTCATTT
CTGCGCCGACCAAGTACACGCCGGAGGTACAATTAAAGTTGTTCTCAACC
TACCTTGATCTTGTTGCCATCGAGATGTTGTTTCAAAGAAAAAAGCACGT
TTTGACTCGGTCTTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTAT
TTCAATGGTCTAACCGCTGAGGAATGCAAAACATAAGAGTACGCCCCTCC
CCGCGATACAGAATCTGTATTGCCTCCAAGAACACCTGGAAAGCCTGTGG
GAGCGCGGTACAATCACGAAATATCACACATACCCCCCTTCCCCCTCCCC
CCCCCGGGATGCAGAATCTGTACTGCCTCCAAGAACACCTGGAAAGCCTG
TGGGAAGACGCAGCTATCACGGCCGCTCGTCTCCTGAACAACCTCGAGTA
CCTGGCCGGCGTTACCGTCTCAGCAAAGGTCGGCTGTGCTGCAGTGGTTA
ACATGCTGAACTTCATATCTTGTGTGTATGTGGAGGCAACGGGTGGATGA
GAAAGGTGTAGCTTCTATCTTGATGAAGTGTGTGATGTGTATGTGTCGTC
CCATTTGAATCTGGGTGTTTGCCGAACTTCCCTTCTCATGTGATATTTTT
TATGAAGAATAGGTGTGGTAGTGCCCTTGGGCCTTGGGGGATCCTATCCG
TGGTACTCGTTCGTGTATTGCTCTCATACTTTCCATTCTATCTTTTTATT
CTTGTGTTTTTTTCGTCAGGACCTGGACGCCTTTCATACTTTTCATTTTT
TGTTTTTTCTTGTTATTTCTTCCTCAGGATCTGGAGGCGTTCGCCGCCTT
CAAGCGCGCCCTCAAGGGGTCCAACGACCAGCACTATTCGGTCGTGGACC
ACGGGGAACAGGGAAGGCGCCGTGAGAAAGAACTAAAGCAGCAACAGCAG
CAGGGTGGGACGGGGGACTCTCAAGGGACTCGTCCAGGAGAAGAGCCGGC
TGGAGGCGGCGGTGATGGTAAGACGAAAGGCCCTCAGTGGTTTTTACATT
GTACTGCTGGGTAGGTGTCTTGACCAAGGATTAAATGGCTTGAAAGGATG
CTGCAAACCAATCTGAAGAATGCACGATATATATATATATATTTTTTTGA
CGTTCTCGTTTCGCAAGAAAAATAAAGTTGATTTATCCACTAGTTTGTTT
AATGGGTGTTGCATATCTCTATTACGCAGAGGACATGACGTGGAGGGAGG
GGCTCCGTCGATTGCGAAACATGGGGCTCGGCGTTGGGCAGGTCCTGGGA
CGCAAGGGGCACATGCCGATGGAACGAAGGCAGCAGGGTTTGCACTACAA
CGAGCTTGTGGAAGGACTGGGAGGGAAGAAGAGGTAAGAGACTTCAACGA
CGACGACATGTACGATTCATGCAGGTTAGCATCGGAATCGTCAGGTGTAC
AAGTAGCTTTGTTGATTATGCCAAGTGACCTAGAGTAATAAAAGCAACCT
ACGCCAGCACCATCAACTTTTCTAACTTTAGGCTTAGTTTTCATATTGCG
AGAGAAAATCAACACGAGAGAAAAACGCACACTGAGTGTCATTCATTTCT
GACGGACCGGAATTTGTGTCGAAGGACACGCGCTGCCCGTAAGTTCGTTG
TTCCCGAAAGATTGCAGAGGAGCACCGATGGTAACTCCTTACGCGGGGAG
ATTGGTGGTGCTTCAAACGGTATCACGTGACCAATGGTTGATGAGTCTTG
TCCTCTCGGCGCGCGGCGCAACGTTGTTGCGGTTTTATCCTACAGATGCG
CCACATGTCCCGGCTTTTCTTTTTTTTGCTTCAAGCAGTACAATCCCTCG
CTTGCCTGCCCACCTTCTTCCTTGAAAGTGCGTGATTTGCCCGGTTTTCA
TGTACGAGTCATTTCTCTGGTGTTTGTCTGTCGACGTCGCGCGTACAGGT
TGCAGAGACAAGCTCTTGTTGTGGTACTTGTGGCTACGATGAACTAGGTT
GTGGCTCCGGTAGACGTGTTTTGGTTTTTGGATGGGTTTTTGAACAGCCG
CTAAACGACTATTATAGCTCTTGACATTCGTGCTTTGGTGTACGTAAAGC
AGTACCCGGGACCAGCAACTGCTTGCTTCTGCAATAGTTGCTGTGGTATT
ACAAGTAGTTCGCGCGTGGACCGGGAGAGTCTCACTACTGCTGTCGTTTT
GCCCTGCAACAAAACACTTCTCTCCTCCATTAAATCTCTCCGCCCCTCTT
GTCTCTGATCGCTTTCAGGGAGCGGTTAGACCGGCATCTGGCCATGAAGG
CTGCGGGAATGGAGTCCGGGGAAACGGACGCCTTCTACAATGCCATGGCC
GACCAGGGAATTCCGGAATAATATCGTCTCCGCTGCAGACTTCGATCTTT
GATGATTTACATGTCGGTGTACACGATGATTTTGTGAGGTTGTGCTTTAG
ACGCTAAGCACATTTGTGCCCCACGACGTGGGGTACGGAAAGGGTTTCAG
AGTATTTGTTGCCGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8738:2943..5608-

>mRNA_Ecto-sp9_F_contig8738.16920.1 ID=mRNA_Ecto-sp9_F_contig8738.16920.1|Name=mRNA_Ecto-sp9_F_contig8738.16920.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1416bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8738:2943..5608- (Ectocarpus species9 EcSCA_722f female)
ATGGCGCCGGACGGGCCCCTGCTGCTCCACGGATGCCGGTTTCGATCTCT
CAACTTCCAGTACACGCCGGAGATGGCGCCGGACGGGCCCCTGCTGCTCC
ACGGATGCCGGTTTCGATCTCTCAACTTCCAGTACACGCCGGAGAATCTG
TACTGCCTCCAAGAACACCTGGAAAGCCTGTGGGAAGACGCAGCTATCAC
GGCCGCTCGTCTCCTGAACAACCTCGAGTACCTGGCCGGCGTTACCGTCT
CAGCAAAGAATCTGTACTGCCTCCAAGAACACCTGGAAAGCCTGTGGGAA
GACGCAGCTATCACGGCCGCTCGTCTCCTGAACAACCTCGAGTACCTGGC
CGGCGTTACCGTCTCAGCAAAGGATCTGGAGGCGTTCGCCGCCTTCAAGC
GCGCCCTCAAGGGGTCCAACGACCAGCACTATTCGGTCGTGGACCACGGG
GAACAGGGAAGGCGCCGTGAGAAAGAACTAAAGCAGCAACAGCAGCAGGG
TGGGACGGGGGACTCTCAAGGGACTCGTCCAGGAGAAGAGCCGGCTGGAG
GCGGCGGTGATGGATCTGGAGGCGTTCGCCGCCTTCAAGCGCGCCCTCAA
GGGGTCCAACGACCAGCACTATTCGGTCGTGGACCACGGGGAACAGGGAA
GGCGCCGTGAGAAAGAACTAAAGCAGCAACAGCAGCAGGGTGGGACGGGG
GACTCTCAAGGGACTCGTCCAGGAGAAGAGCCGGCTGGAGGCGGCGGTGA
TGAGGACATGACGTGGAGGGAGGGGCTCCGTCGATTGCGAAACATGGGGC
TCGGCGTTGGGCAGGTCCTGGGACGCAAGGGGCACATGCCGATGGAACGA
AGGCAGCAGGGTTTGCACTACAACGAGCTTGTGGAAGGACTGGGAGGGAA
GAAGAGAGGACATGACGTGGAGGGAGGGGCTCCGTCGATTGCGAAACATG
GGGCTCGGCGTTGGGCAGGTCCTGGGACGCAAGGGGCACATGCCGATGGA
ACGAAGGCAGCAGGGTTTGCACTACAACGAGCTTGTGGAAGGACTGGGAG
GGAAGAAGAGACCGGCATCTGGCCATGAAGGCTGCGGGAATGGAGTCCGG
GGAAACGGACGCCTTCTACAATGCCATGGCCGACCAGGGAATTCCGGAAT
AATATCGTCTCCGCTGCAGACTTCGATCTTTGATGATTTACATGTCGGTG
TACACGATGATTTTGTGAGGTTGTGCTTTAGACGCTAAACCGGCATCTGG
CCATGAAGGCTGCGGGAATGGAGTCCGGGGAAACGGACGCCTTCTACAAT
GCCATGGCCGACCAGGGAATTCCGGAATAATATCGTCTCCGCTGCAGACT
TCGATCTTTGATGATTTACATGTCGGTGTACACGATGATTTTGTGAGGTT
GTGCTTTAGACGCTAA
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