prot_Ecto-sp9_F_contig8724.16909.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8724.16909.1
Unique Nameprot_Ecto-sp9_F_contig8724.16909.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length83
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8724.16909.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF1_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 9.120e-37
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0 
Query:    1 MGGDAVVLTADTAEIEPFHRVFRRPLSLLRADPAPLVAPTVLNRASDGGRRQSAAPLPAAKDATHDNATGNPSA 74
            MGGDA+VLTADTAEIEPFHRVFRRPLSLLRADP PLVAPTVLNRASDGGRRQSAAPLPAAKDATHDN TGNPSA
Sbjct: 1500 MGGDAIVLTADTAEIEPFHRVFRRPLSLLRADPTPLVAPTVLNRASDGGRRQSAAPLPAAKDATHDNTTGNPSA 1573
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8724.16909.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ77_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.280e-24
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0 
Query:    1 MGGDAVVLTADTAEIEPFHRVFRRPLSLLRADPAPLVAPTVLNRASDGGRRQSAAP 56
            MGGDA+VLTAD AEIEPFHRVFRRPLSLLRADP PLVAPTVLNRASDGGRR+SAAP
Sbjct: 1367 MGGDAIVLTADMAEIEPFHRVFRRPLSLLRADPTPLVAPTVLNRASDGGRRKSAAP 1422
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8724.16909.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.120e-3795.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
C23.280e-2492.86domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8724contigEcto-sp9_F_contig8724:2281..3507 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8724.16909.1mRNA_Ecto-sp9_F_contig8724.16909.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8724 2271..3507 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8724.16909.1 ID=prot_Ecto-sp9_F_contig8724.16909.1|Name=mRNA_Ecto-sp9_F_contig8724.16909.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp
MGGDAVVLTADTAEIEPFHRVFRRPLSLLRADPAPLVAPTVLNRASDGGR
RQSAAPLPAAKDATHDNATGNPSAGGGGGWAKR
back to top