mRNA_Ecto-sp9_F_contig8724.16909.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8724.16909.1
Unique NamemRNA_Ecto-sp9_F_contig8724.16909.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8724.16909.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF1_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 8.170e-40
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 2 
Query:    2 DNWMGGDAVVLTADTAEIEPFHRVFRRPLSLLRADPAPLVAPTVLNRASDGGRRQSAAPLPAAKDATHDNATGNPSA 232
            DNWMGGDA+VLTADTAEIEPFHRVFRRPLSLLRADP PLVAPTVLNRASDGGRRQSAAPLPAAKDATHDN TGNPSA
Sbjct: 1497 DNWMGGDAIVLTADTAEIEPFHRVFRRPLSLLRADPTPLVAPTVLNRASDGGRRQSAAPLPAAKDATHDNTTGNPSA 1573
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BLAST of mRNA_Ecto-sp9_F_contig8724.16909.1 vs.
Match: C2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ77_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.910e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 2 
Query:    2 DNWMGGDAVVLTADTAEIEPFHRVFRRPLSLLRADPAPLVAPTVLNRASDGGRRQSAAP 178
            DNWMGGDA+VLTAD AEIEPFHRVFRRPLSLLRADP PLVAPTVLNRASDGGRR+SAAP
Sbjct: 1364 DNWMGGDAIVLTADMAEIEPFHRVFRRPLSLLRADPTPLVAPTVLNRASDGGRRKSAAP 1422
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8724.16909.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.170e-4096.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
C22.910e-2793.22domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8724contigEcto-sp9_F_contig8724:2271..3507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size259
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8724.16909.1prot_Ecto-sp9_F_contig8724.16909.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8724 2281..3507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930919.6847813-UTR-Ecto-sp9_F_contig8724:2270..22801622930919.6847813-UTR-Ecto-sp9_F_contig8724:2270..2280Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8724 2271..2280 +
1692278948.8824632-UTR-Ecto-sp9_F_contig8724:2270..22801692278948.8824632-UTR-Ecto-sp9_F_contig8724:2270..2280Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8724 2271..2280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930919.7042859-CDS-Ecto-sp9_F_contig8724:2280..23221622930919.7042859-CDS-Ecto-sp9_F_contig8724:2280..2322Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8724 2281..2322 +
1692278948.8939505-CDS-Ecto-sp9_F_contig8724:2280..23221692278948.8939505-CDS-Ecto-sp9_F_contig8724:2280..2322Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8724 2281..2322 +
1622930919.722243-CDS-Ecto-sp9_F_contig8724:3300..35071622930919.722243-CDS-Ecto-sp9_F_contig8724:3300..3507Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8724 3301..3507 +
1692278948.9051678-CDS-Ecto-sp9_F_contig8724:3300..35071692278948.9051678-CDS-Ecto-sp9_F_contig8724:3300..3507Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8724 3301..3507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8724.16909.1

>prot_Ecto-sp9_F_contig8724.16909.1 ID=prot_Ecto-sp9_F_contig8724.16909.1|Name=mRNA_Ecto-sp9_F_contig8724.16909.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp
MGGDAVVLTADTAEIEPFHRVFRRPLSLLRADPAPLVAPTVLNRASDGGR
RQSAAPLPAAKDATHDNATGNPSAGGGGGWAKR
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mRNA from alignment at Ecto-sp9_F_contig8724:2271..3507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8724.16909.1 ID=mRNA_Ecto-sp9_F_contig8724.16909.1|Name=mRNA_Ecto-sp9_F_contig8724.16909.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1237bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8724:2271..3507+ (Ectocarpus species9 EcSCA_722f female)
GGACAATTGGATGGGTGGCGACGCGGTCGTTCTAACAGCTGACACGGCAG
AGGTGTGTATTGTGTACAAGGCGAGCCTCCGTGCAATAGTAGTTCTAAAA
GTATTATAGTGGTGTCATCAAGGCGTGATGCAAGATGAAAGCATGTGTTG
GTATGAACCAGCTGCCAGCTAATAGCTGCCATCAGTGACGTTTCACAAGC
TCGAAAAGCTGGCGTATTTTTGTACTCGACGAGCCCAGCGAACCTAAAAG
AACCTAAAAGATTTTGTTTTTACACATCTGTATACAGCAGTATCATGTAT
GCTTGATGGCGTCATCGCGAGACAACAGCAGGTGCGCATCATGCTGCACA
ATTGCATCAATGCCGAGGTGTATGTATGTCCGGAATGATTGGTTTGTGGT
GGTGCCGGGCGCGGGTATGGCACGCTGTGTGACTGGATGAAACGTACGCG
GACATGACAGAGTCGGTATCTTGCGTGGCGTGGTCCCAAGTTATCGTCCG
ATACGGCGGGCAGAGTTTGTGGTTCGACCCATGCATCCCTTCCTTCTCCA
CTTGGCCACTACGGCCATCACCGCCCGCCACCACAGCCAGCAGTACCACG
GTTTGTCGGTTTATCTTTACCCCTTCATTATCATTATTCCGTTTTCACCG
TTCCGTTGAGATCAGTTTCACCTTTGAGTGTTGCCATCATTCCAGTTTTC
GCAATGTCCATTACATTGTTGTCATCACATCACTTCCATCATCCCAAAGT
TGTAGTCACCCCCTTTCCCAGCGTTCCATTCTTGTCATCAACCCATTCCC
ACCATTCCAGCTCACCTGTCGTTCTTGTCATCATTCCGGTTTCGTCGTTC
TGTTTCCATCCATCACTTCCGTTGCTATCACCCCATGTCCATCGTTCCAA
ATCCATCACTCCGTTTCCGTCATTCCATTTTCACCATTCCGTTGCGCCCA
GCCTAGCTTCACTTTTTCATTGCCGCCGTCATTCCGTTGTTGTGCCATCA
CCCCATTTTCCATCATTCCATTTTTCGCAGATCGAGCCCTTCCACCGGGT
GTTTCGGCGGCCCCTGTCCCTCCTACGGGCAGACCCGGCACCGCTCGTCG
CACCCACGGTCCTTAACCGGGCATCCGACGGCGGCCGGCGGCAGTCCGCG
GCCCCCCTCCCCGCCGCAAAGGACGCCACCCACGATAACGCCACTGGAAA
CCCGTCCGCAGGAGGAGGAGGGGGCTGGGCAAAGCGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8724:2271..3507+

>mRNA_Ecto-sp9_F_contig8724.16909.1 ID=mRNA_Ecto-sp9_F_contig8724.16909.1|Name=mRNA_Ecto-sp9_F_contig8724.16909.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8724:2271..3507+ (Ectocarpus species9 EcSCA_722f female)
ATGGGTGGCGACGCGGTCGTTCTAACAGCTGACACGGCAGAGATGGGTGG
CGACGCGGTCGTTCTAACAGCTGACACGGCAGAGATCGAGCCCTTCCACC
GGGTGTTTCGGCGGCCCCTGTCCCTCCTACGGGCAGACCCGGCACCGCTC
GTCGCACCCACGGTCCTTAACCGGGCATCCGACGGCGGCCGGCGGCAGTC
CGCGGCCCCCCTCCCCGCCGCAAAGGACGCCACCCACGATAACGCCACTG
GAAACCCGTCCGCAGGAGGAGGAGGGGGCTGGGCAAAGCGCATCGAGCCC
TTCCACCGGGTGTTTCGGCGGCCCCTGTCCCTCCTACGGGCAGACCCGGC
ACCGCTCGTCGCACCCACGGTCCTTAACCGGGCATCCGACGGCGGCCGGC
GGCAGTCCGCGGCCCCCCTCCCCGCCGCAAAGGACGCCACCCACGATAAC
GCCACTGGAAACCCGTCCGCAGGAGGAGGAGGGGGCTGGGCAAAGCGC
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