prot_Ecto-sp9_F_contig8699.16876.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8699.16876.1
Unique Nameprot_Ecto-sp9_F_contig8699.16876.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length263
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8699.16876.1 vs.
Match: NUP50 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A5_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.990e-62
Identity = 237/263 (90.11%), Postives = 238/263 (90.49%), Query Frame = 0 
Query:    1 MAEGGSVRKVKRTAEHQINKDEDPEGDGVGEEVEAGTFQRAPAEVLKTRKIVKVRSRSPAEQPPAAAASANPFASLGSASSAGXXXXXPFQNVVLSTKPADTAPSAETATPSATPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPGAAVDGAKAGGGAAKEXXXXXXXVVSFASLGGGGTATPFK 263
            MAEGGSVRKVKRTAEHQINKDEDPEGDGVG+EVEAGTFQRAPAEVLKTRKIVKVRSRSPAEQPPAAAASANPFASLGSASSAGXXXXXPFQNVVLSTKPADTAPSAETA PSATPAA       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       PSPGAAVD  KAG GAAKE       VVSFASLGGGGTATPFK
Sbjct:    1 MAEGGSVRKVKRTAEHQINKDEDPEGDGVGQEVEAGTFQRAPAEVLKTRKIVKVRSRSPAEQPPAAAASANPFASLGSASSAGXXXXXPFQNVVLSTKPADTAPSAETAMPSATPAAAATNGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------PSPGAAVDNPKAGEGAAKEEKPAAAGVVSFASLGGGGTATPFK 256
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BLAST of mRNA_Ecto-sp9_F_contig8699.16876.1 vs.
Match: RanBD1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH2_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.580e-53
Identity = 206/267 (77.15%), Postives = 209/267 (78.28%), Query Frame = 0 
Query:    1 MAEGGSVRKVKRTAEHQINKDEDPEGDGVGEEVEAGTFQRAPAEVLKTRKIVKVRSRSPAEQPPAAAASA----NPFASLGSASSAGXXXXXPFQNVVLSTKPADTAPSAETATPSATPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPGAAVDGAKAGGGAAKEXXXXXXXVVSFASLGGGGTATPFK 263
            MAEGGSVRK KRTAEHQINKDEDPEGDGVGEEVEAGTFQRA AEVLKTRKIVKVRSRSPAEQPPAA A+A    NPFASLGSASS  XXXXXPFQNVVL+TKPAD  PSAETATPSATP     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXX                           XXXXX PSPGAAVDGAKAG GAAKE       VVSFA+LGGGGTATPFK
Sbjct:    1 MAEGGSVRKAKRTAEHQINKDEDPEGDGVGEEVEAGTFQRASAEVLKTRKIVKVRSRSPAEQPPAAVAAAAVAANPFASLGSASSXXXXXXXPFQNVVLTTKPADAVPSAETATPSATP-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQSTAEXXXXXDAASKDEDTAEAKTERKEPENGTKKEGXXXXXKPSPGAAVDGAKAGEGAAKEEKPPAAGVVSFATLGGGGTATPFK 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8699.16876.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
NUP501.990e-6290.11domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RanBD11.580e-5377.15domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015007Nuclear pore complex, NUP2/50/61PFAMPF08911NUP50coord: 11..78
e-value: 1.5E-15
score: 57.6
NoneNo IPR availablePANTHERPTHR23138RAN BINDING PROTEINcoord: 11..253
NoneNo IPR availablePANTHERPTHR23138:SF142NUCLEAR PORE COMPLEX PROTEIN NUP50A-RELATEDcoord: 11..253

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8699contigEcto-sp9_F_contig8699:3692..5457 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8699.16876.1mRNA_Ecto-sp9_F_contig8699.16876.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8699 2468..5457 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8699.16876.1 ID=prot_Ecto-sp9_F_contig8699.16876.1|Name=mRNA_Ecto-sp9_F_contig8699.16876.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=263bp
MAEGGSVRKVKRTAEHQINKDEDPEGDGVGEEVEAGTFQRAPAEVLKTRK
IVKVRSRSPAEQPPAAAASANPFASLGSASSAGAAAANPFQNVVLSTKPA
DTAPSAETATPSATPAAAAAAATNGGSGSASAAAAAATAASDGGGASSSA
IPASAETPPSPKPAAAAAPTEDPQSTAEASAGGDGASKDENTAEAKTERK
EPENGTKKEGEGDGDGDGDKPSPGAAVDGAKAGGGAAKEEKPAAAGVVSF
ASLGGGGTATPFK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015007NUP2/50/61