mRNA_Ecto-sp9_F_contig8699.16876.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8699.16876.1
Unique NamemRNA_Ecto-sp9_F_contig8699.16876.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8699.16876.1 vs.
Match: NUP50 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A5_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 7.630e-62
Identity = 237/263 (90.11%), Postives = 238/263 (90.49%), Query Frame = 1 
Query:  121 MAEGGSVRKVKRTAEHQINKDEDPEGDGVGEEVEAGTFQRAPAEVLKTRKIVKVRSRSPAEQPPAAAASANPFASLGSASSAGXXXXXPFQNVVLSTKPADTAPSAETATPSATPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPGAAVDGAKAGGGAAKEXXXXXXXVVSFASLGGGGTATPFK 909
            MAEGGSVRKVKRTAEHQINKDEDPEGDGVG+EVEAGTFQRAPAEVLKTRKIVKVRSRSPAEQPPAAAASANPFASLGSASSAGXXXXXPFQNVVLSTKPADTAPSAETA PSATPAA       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       PSPGAAVD  KAG GAAKE       VVSFASLGGGGTATPFK
Sbjct:    1 MAEGGSVRKVKRTAEHQINKDEDPEGDGVGQEVEAGTFQRAPAEVLKTRKIVKVRSRSPAEQPPAAAASANPFASLGSASSAGXXXXXPFQNVVLSTKPADTAPSAETAMPSATPAAAATNGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------PSPGAAVDNPKAGEGAAKEEKPAAAGVVSFASLGGGGTATPFK 256
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BLAST of mRNA_Ecto-sp9_F_contig8699.16876.1 vs.
Match: RanBD1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH2_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 5.790e-53
Identity = 206/267 (77.15%), Postives = 209/267 (78.28%), Query Frame = 1 
Query:  121 MAEGGSVRKVKRTAEHQINKDEDPEGDGVGEEVEAGTFQRAPAEVLKTRKIVKVRSRSPAEQPPAAAASA----NPFASLGSASSAGXXXXXPFQNVVLSTKPADTAPSAETATPSATPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPGAAVDGAKAGGGAAKEXXXXXXXVVSFASLGGGGTATPFK 909
            MAEGGSVRK KRTAEHQINKDEDPEGDGVGEEVEAGTFQRA AEVLKTRKIVKVRSRSPAEQPPAA A+A    NPFASLGSASS  XXXXXPFQNVVL+TKPAD  PSAETATPSATP     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXX                           XXXXX PSPGAAVDGAKAG GAAKE       VVSFA+LGGGGTATPFK
Sbjct:    1 MAEGGSVRKAKRTAEHQINKDEDPEGDGVGEEVEAGTFQRASAEVLKTRKIVKVRSRSPAEQPPAAVAAAAVAANPFASLGSASSXXXXXXXPFQNVVLTTKPADAVPSAETATPSATP-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQSTAEXXXXXDAASKDEDTAEAKTERKEPENGTKKEGXXXXXKPSPGAAVDGAKAGEGAAKEEKPPAAGVVSFATLGGGGTATPFK 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8699.16876.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
NUP507.630e-6290.11domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RanBD15.790e-5377.15domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8699contigEcto-sp9_F_contig8699:2468..5457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size909
Cds size789
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8699.16876.1prot_Ecto-sp9_F_contig8699.16876.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8699 3692..5457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.3781712-UTR-Ecto-sp9_F_contig8699:2467..25471622930913.3781712-UTR-Ecto-sp9_F_contig8699:2467..2547Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8699 2468..2547 +
1692278946.1520574-UTR-Ecto-sp9_F_contig8699:2467..25471692278946.1520574-UTR-Ecto-sp9_F_contig8699:2467..2547Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8699 2468..2547 +
1622930913.419515-UTR-Ecto-sp9_F_contig8699:3651..36911622930913.419515-UTR-Ecto-sp9_F_contig8699:3651..3691Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8699 3652..3691 +
1692278946.169795-UTR-Ecto-sp9_F_contig8699:3651..36911692278946.169795-UTR-Ecto-sp9_F_contig8699:3651..3691Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8699 3652..3691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.4454544-CDS-Ecto-sp9_F_contig8699:3691..38401622930913.4454544-CDS-Ecto-sp9_F_contig8699:3691..3840Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8699 3692..3840 +
1692278946.181646-CDS-Ecto-sp9_F_contig8699:3691..38401692278946.181646-CDS-Ecto-sp9_F_contig8699:3691..3840Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8699 3692..3840 +
1622930913.4649127-CDS-Ecto-sp9_F_contig8699:4817..54571622930913.4649127-CDS-Ecto-sp9_F_contig8699:4817..5457Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8699 4818..5457 +
1692278946.1915884-CDS-Ecto-sp9_F_contig8699:4817..54571692278946.1915884-CDS-Ecto-sp9_F_contig8699:4817..5457Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8699 4818..5457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8699.16876.1

>prot_Ecto-sp9_F_contig8699.16876.1 ID=prot_Ecto-sp9_F_contig8699.16876.1|Name=mRNA_Ecto-sp9_F_contig8699.16876.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=263bp
MAEGGSVRKVKRTAEHQINKDEDPEGDGVGEEVEAGTFQRAPAEVLKTRK
IVKVRSRSPAEQPPAAAASANPFASLGSASSAGAAAANPFQNVVLSTKPA
DTAPSAETATPSATPAAAAAAATNGGSGSASAAAAAATAASDGGGASSSA
IPASAETPPSPKPAAAAAPTEDPQSTAEASAGGDGASKDENTAEAKTERK
EPENGTKKEGEGDGDGDGDKPSPGAAVDGAKAGGGAAKEEKPAAAGVVSF
ASLGGGGTATPFK
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mRNA from alignment at Ecto-sp9_F_contig8699:2468..5457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8699.16876.1 ID=mRNA_Ecto-sp9_F_contig8699.16876.1|Name=mRNA_Ecto-sp9_F_contig8699.16876.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2990bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8699:2468..5457+ (Ectocarpus species9 EcSCA_722f female)
CATGACGAAGAAGATCACACGAGCCACGGTGTGCGATTGTGCTCTCTTTG
TTTACGCACAAGGACTGCGGGTGCGCGAAGGTCTGTGTTTGTGTTGCAGC
ATTGAGGACTGACGTAATGCTGCCCAATTTTTTTTTGGTAGGTTCCATCC
CGCTGTTGCCTAGAAGCCGAAATCACACCATTAGATTTGTGTCCACGCTT
ATTTTGAGTATTGTTTTGGAGGCCCCAGTCGGGATCACAGAGAAAGGTAG
AATGACACACCAGAAAGAGTTTTTACCACCTTTGTTATTGCGTGCTTGCC
GTTGTTTAGACTTCACGTCTCGACAGGAGTCAGCCTTTCCGTTCCCGCTT
TACGCGGCTAAGATGATCTGAAAAGGGGGGGGTTCCTCCTCCTCTTAAAT
TGGCTCTTGGAAGACAATAATAGCTCCAAATCACGGTGGGTGGTGGCAAG
GATGATACCGTAAAGAGGAGCCCTTTGGAGTTTGTGATATTTCCATATTT
CTGAAGAGTTAAGCAACGGTTCTACACTTGCGAACCGTGCTCACAATGGT
TCACGTTACCATCTATTTGGCAAACAAGTGTTGATACGTCGACGTATGAA
ATCCCGGTTCGTGAGGCTGCGCCGACGAAGTTCGAAGTCACGTCAAATGA
AGTTTGGAAGTTTGCAAGGTCATCGCCTGGGAACTGGTCTATCACCCTCA
AAACATTTGCATTCAACAACTTGTGAATAATTTATCACTGGTGGCCAGAT
GGTTGAGGGTACAGCATTACTGCATCTAGGTTGAGCACCGATGACAACCT
CTGGGGCCGGCAAGCATTCCCGCGTAACGGAGAGAGAGTATTTGTAGTGT
GATGGCGTCATTCCAACGGACACGGCGGGCTGGCAGCAGATGCCACAAAT
TTTTTTCTGTGTCCAAGGTCGATCCCAGCCTCCCAACCTCCCCCCCTCAA
CCCTTGGCAGGTTGTGATCGGTGCACGGCCTACACGTCTGGCCACCAGCG
ATGGCCGGGATTCACATGCATGTTCATGATGGATTGGATTCCTGGATTAT
GGCTTTCACGGAACCCCGTATGTACCTCGCTGATGATTTTGCGGAGTCCC
CCCTCGCGAAGAGCGTGAAGTTGCGCACTTGATTGTGTGTGTTGCCTTGC
ACTGGTTCCATTGCCTGCCTGCGGCGGATGCCAGATCAACAGTAGAGCCG
CCTGGGACGTAACGCAGCAGCAGCATGGCGGAAGGAGGATCGGTGCGCAA
GGTCAAGCGTACTGCCGAGCACCAGATCAACAAGGACGAGGATCCCGAGG
GCGATGGAGTGGGCGAAGAGGTGGAGGCGGGCACCTTTCAGCGAGCGCCT
GCCGAAGTTCTCAAGACGAGGAAGTAAGCGCTGTGTGCCTGTGCCTACTA
CAAGCCGAGACAAACCATATTTCTTCGCGGGTGGCTGCATTGATAATTCA
GGCTGAATTGGCACTCTACTTTTGCAGCAGAAGGCGTAGCTTCGTGCGTT
TTTCCTGTGGGATTGAGATTCGCCCGTTGTTGCAGAGAGTAAGGTTCGTG
GCGTACACCCCCCCCCTATCCCCACTCTTGACCCAGCAGGTCTGGTGTAC
CCTCGGGCAGGGCTGTCTCCTCGAAAAGATGCTGGGATGAACGCCGACAC
TGAGACATGCTAAATTCTGGTGTTGCCTGGTTCTTTTCTGGCTGTCGAAG
CCTTTAGACAGTAAGCTACATATGCATTGCTTGTCACACGGGCAACAGGC
GTTTGGCTTCTCCATGGCTCTCTTTTACGTGTGTTGATCCCCGCACCAAG
CGGAGAGGGAGGTGCTCGCACTCTGCTGCGCGCCGGTGCTGTCCGGCGCT
TCGCATGCAGTCGTCGTCGGTGTGGCGAGTAGAAGGCAATAGGCACCCAT
CCAAATGCGTTGCAGGGTGTGTTGAATTCCACAGCAGTCGCTTGGCTTAC
CGACGTTCGTTCTAGAAAAGGCAGTACCTGGTTGAGGTTGCAACTGGTAC
TGCTGTTGACAGGAGGCAACGATGGAGAAGATCCACAGCAGTGACGGCGG
TCGAACGCGGGTATTACGGTAATCCTTGTAGTGCCCGCGGGTGCTGCATG
TTGCGATTCTAGCACCGTTCACAGGATTTCGATGTCCAAATTTCTGTTTG
CAGGTGTGTGCGAACGCCTGTTGCCAGGTGTAAAGTAACACTGGTGACTG
CAAAGTTTATCCAAAGCCATTTTCCCTTGCCATCCCCTCATCAATGCACT
GGACGGTTGTACCTGCTGGGCTGTCTCCGTCCGTCCCTGTGTCTTCTTAC
AAACGTCCTTGACGATTTTACGTTGTTACCTGCCATCAATGCCGGCTCAG
GATCGTGAAGGTCAGATCAAGATCCCCGGCGGAACAACCTCCCGCCGCCG
CCGCCTCTGCCAACCCGTTCGCGAGTCTCGGGTCTGCCTCCTCCGCCGGT
GCCGCCGCTGCGAACCCTTTCCAGAACGTGGTTCTCTCGACCAAGCCTGC
CGACACGGCACCATCAGCGGAGACGGCAACGCCATCAGCCACGCCGGCGG
CGGCGGCGGCGGCGGCTACCAACGGCGGAAGCGGCAGCGCCTCGGCGGCG
GCGGCGGCGGCGACGGCCGCGTCAGACGGAGGTGGCGCTAGCTCTTCCGC
CATCCCGGCTAGCGCGGAGACGCCTCCATCCCCGAAACCCGCAGCAGCAG
CAGCACCGACAGAGGACCCGCAGTCTACGGCGGAAGCGAGTGCGGGAGGT
GACGGTGCCTCCAAGGACGAGAACACAGCGGAAGCCAAGACGGAGAGAAA
AGAACCCGAGAACGGGACCAAGAAGGAAGGAGAAGGGGACGGGGACGGGG
ACGGGGACAAGCCATCCCCTGGGGCGGCCGTAGACGGCGCGAAGGCGGGA
GGGGGGGCGGCGAAGGAGGAGAAGCCGGCGGCGGCGGGGGTGGTCTCGTT
TGCGAGTCTCGGCGGAGGCGGCACGGCAACGCCATTCAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8699:2468..5457+

>mRNA_Ecto-sp9_F_contig8699.16876.1 ID=mRNA_Ecto-sp9_F_contig8699.16876.1|Name=mRNA_Ecto-sp9_F_contig8699.16876.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1578bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8699:2468..5457+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGGAAGGAGGATCGGTGCGCAAGGTCAAGCGTACTGCCGAGCACCA
GATCAACAAGGACGAGGATCCCGAGGGCGATGGAGTGGGCGAAGAGGTGG
AGGCGGGCACCTTTCAGCGAGCGCCTGCCGAAGTTCTCAAGACGAGGAAA
TGGCGGAAGGAGGATCGGTGCGCAAGGTCAAGCGTACTGCCGAGCACCAG
ATCAACAAGGACGAGGATCCCGAGGGCGATGGAGTGGGCGAAGAGGTGGA
GGCGGGCACCTTTCAGCGAGCGCCTGCCGAAGTTCTCAAGACGAGGAAGA
TCGTGAAGGTCAGATCAAGATCCCCGGCGGAACAACCTCCCGCCGCCGCC
GCCTCTGCCAACCCGTTCGCGAGTCTCGGGTCTGCCTCCTCCGCCGGTGC
CGCCGCTGCGAACCCTTTCCAGAACGTGGTTCTCTCGACCAAGCCTGCCG
ACACGGCACCATCAGCGGAGACGGCAACGCCATCAGCCACGCCGGCGGCG
GCGGCGGCGGCGGCTACCAACGGCGGAAGCGGCAGCGCCTCGGCGGCGGC
GGCGGCGGCGACGGCCGCGTCAGACGGAGGTGGCGCTAGCTCTTCCGCCA
TCCCGGCTAGCGCGGAGACGCCTCCATCCCCGAAACCCGCAGCAGCAGCA
GCACCGACAGAGGACCCGCAGTCTACGGCGGAAGCGAGTGCGGGAGGTGA
CGGTGCCTCCAAGGACGAGAACACAGCGGAAGCCAAGACGGAGAGAAAAG
AACCCGAGAACGGGACCAAGAAGGAAGGAGAAGGGGACGGGGACGGGGAC
GGGGACAAGCCATCCCCTGGGGCGGCCGTAGACGGCGCGAAGGCGGGAGG
GGGGGCGGCGAAGGAGGAGAAGCCGGCGGCGGCGGGGGTGGTCTCGTTTG
CGAGTCTCGGCGGAGGCGGCACGGCAACGCCATTCAAGGATCGTGAAGGT
CAGATCAAGATCCCCGGCGGAACAACCTCCCGCCGCCGCCGCCTCTGCCA
ACCCGTTCGCGAGTCTCGGGTCTGCCTCCTCCGCCGGTGCCGCCGCTGCG
AACCCTTTCCAGAACGTGGTTCTCTCGACCAAGCCTGCCGACACGGCACC
ATCAGCGGAGACGGCAACGCCATCAGCCACGCCGGCGGCGGCGGCGGCGG
CGGCTACCAACGGCGGAAGCGGCAGCGCCTCGGCGGCGGCGGCGGCGGCG
ACGGCCGCGTCAGACGGAGGTGGCGCTAGCTCTTCCGCCATCCCGGCTAG
CGCGGAGACGCCTCCATCCCCGAAACCCGCAGCAGCAGCAGCACCGACAG
AGGACCCGCAGTCTACGGCGGAAGCGAGTGCGGGAGGTGACGGTGCCTCC
AAGGACGAGAACACAGCGGAAGCCAAGACGGAGAGAAAAGAACCCGAGAA
CGGGACCAAGAAGGAAGGAGAAGGGGACGGGGACGGGGACGGGGACAAGC
CATCCCCTGGGGCGGCCGTAGACGGCGCGAAGGCGGGAGGGGGGGCGGCG
AAGGAGGAGAAGCCGGCGGCGGCGGGGGTGGTCTCGTTTGCGAGTCTCGG
CGGAGGCGGCACGGCAACGCCATTCAAG
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