prot_Ecto-sp9_F_contig11007.893.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig11007.893.1
Unique Nameprot_Ecto-sp9_F_contig11007.893.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length73
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11007.893.1 vs.
Match: Nucleoporin_N (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.390e-42
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 
Query:    1 MSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHVRHRVECLLKAISACHKCDLDSAQ 73
            MSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHVRHRVECLLKAISACHKCDLDSAQ
Sbjct: 1075 MSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHVRHRVECLLKAISACHKCDLDSAQ 1147
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BLAST of mRNA_Ecto-sp9_F_contig11007.893.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J909_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.940e-38
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:    1 MSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHVRHRVECLLKAISACHKCDLDSAQ 73
            +SIRTPGVE+YLKRDPEDLFRHYMLSK+YPKAVHLMD EARVEA SGVHVRHRVECLLKAISACHKCDLDSAQ
Sbjct:  554 LSIRTPGVEQYLKRDPEDLFRHYMLSKDYPKAVHLMDREARVEAGSGVHVRHRVECLLKAISACHKCDLDSAQ 626
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11007.893.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Nucleoporin_N2.390e-42100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.940e-3893.15protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11007contigEcto-sp9_F_contig11007:125..1090 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11007.893.1mRNA_Ecto-sp9_F_contig11007.893.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig11007 112..1090 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig11007.893.1 ID=prot_Ecto-sp9_F_contig11007.893.1|Name=mRNA_Ecto-sp9_F_contig11007.893.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=73bp
MSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHV
RHRVECLLKAISACHKCDLDSAQ
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