mRNA_Ecto-sp9_F_contig11007.893.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11007.893.1
Unique NamemRNA_Ecto-sp9_F_contig11007.893.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11007.893.1 vs.
Match: Nucleoporin_N (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.270e-43
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 2 
Query:    2 KKLLMSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHVRHRVECLLKAISACHKCDLDSAQ 232
            KKLLMSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHVRHRVECLLKAISACHKCDLDSAQ
Sbjct: 1071 KKLLMSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHVRHRVECLLKAISACHKCDLDSAQ 1147
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BLAST of mRNA_Ecto-sp9_F_contig11007.893.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J909_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.030e-39
Identity = 72/77 (93.51%), Postives = 75/77 (97.40%), Query Frame = 2 
Query:    2 KKLLMSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHVRHRVECLLKAISACHKCDLDSAQ 232
            KKLL+SIRTPGVE+YLKRDPEDLFRHYMLSK+YPKAVHLMD EARVEA SGVHVRHRVECLLKAISACHKCDLDSAQ
Sbjct:  550 KKLLLSIRTPGVEQYLKRDPEDLFRHYMLSKDYPKAVHLMDREARVEAGSGVHVRHRVECLLKAISACHKCDLDSAQ 626
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11007.893.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Nucleoporin_N1.270e-43100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.030e-3993.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11007contigEcto-sp9_F_contig11007:112..1090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D7G0M6
Preferred nameNUP155
KEGG koko:K14312
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000972,GO:0001508,GO:0001555,GO:0001654,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003674,GO:0003682,GO:0005198,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005886,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006936,GO:0006941,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007015,GO:0007017,GO:0007049,GO:0007051,GO:0007053,GO:0007088,GO:0007096,GO:0007140,GO:0007154,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007295,GO:0007300,GO:0007303,GO:0007346,GO:0007423,GO:0007444,GO:0008015,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009506,GO:0009507,GO:0009536,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0009994,GO:0010256,GO:0010467,GO:0010564,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016049,GO:0016482,GO:0017038,GO:0017056,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030029,GO:0030036,GO:0030048,GO:0030054,GO:0030154,GO:0030715,GO:0030717,GO:0031090,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035220,GO:0035295,GO:0035637,GO:0036228,GO:0040007,GO:0042127,GO:0042306,GO:0042307,GO:0042391,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043902,GO:0044057,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044611,GO:0044703,GO:0045184,GO:0045477,GO:0045595,GO:0046822,GO:0046824,GO:0046907,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0051028,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051276,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051783,GO:0055044,GO:0055049,GO:0055050,GO:0060047,GO:0060048,GO:0060284,GO:0060341,GO:0060429,GO:0061024,GO:0061337,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070201,GO:0070252,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072657,GO:0086001,GO:0086002,GO:0086003,GO:0086014,GO:0086019,GO:0086026,GO:0086065,GO:0086066,GO:0090087,GO:0090306,GO:0090316,GO:0090435,GO:0097435,GO:0140013,GO:1900180,GO:1900182,GO:1901987,GO:1901990,GO:1903046,GO:1903522,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904748,GO:1904951,GO:1905475,GO:1905879,GO:1905936,GO:1905938,GO:2000241,GO:2000243
EggNOG free text desc.protein localization to nuclear inner membrane
EggNOG OGsCOG5308@1,KOG1900@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size232
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11007.893.1prot_Ecto-sp9_F_contig11007.893.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11007 125..1090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928336.6006758-UTR-Ecto-sp9_F_contig11007:111..1241622928336.6006758-UTR-Ecto-sp9_F_contig11007:111..124Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11007 112..124 +
1692277838.2090049-UTR-Ecto-sp9_F_contig11007:111..1241692277838.2090049-UTR-Ecto-sp9_F_contig11007:111..124Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11007 112..124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928336.6107872-CDS-Ecto-sp9_F_contig11007:124..2171622928336.6107872-CDS-Ecto-sp9_F_contig11007:124..217Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11007 125..217 +
1692277838.2236662-CDS-Ecto-sp9_F_contig11007:124..2171692277838.2236662-CDS-Ecto-sp9_F_contig11007:124..217Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11007 125..217 +
1622928336.6239238-CDS-Ecto-sp9_F_contig11007:964..10901622928336.6239238-CDS-Ecto-sp9_F_contig11007:964..1090Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11007 965..1090 +
1692277838.2359703-CDS-Ecto-sp9_F_contig11007:964..10901692277838.2359703-CDS-Ecto-sp9_F_contig11007:964..1090Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11007 965..1090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11007.893.1

>prot_Ecto-sp9_F_contig11007.893.1 ID=prot_Ecto-sp9_F_contig11007.893.1|Name=mRNA_Ecto-sp9_F_contig11007.893.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=73bp
MSIRTPGVERYLKRDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHV
RHRVECLLKAISACHKCDLDSAQ
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mRNA from alignment at Ecto-sp9_F_contig11007:112..1090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11007.893.1 ID=mRNA_Ecto-sp9_F_contig11007.893.1|Name=mRNA_Ecto-sp9_F_contig11007.893.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=979bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11007:112..1090+ (Ectocarpus species9 EcSCA_722f female)
CAAGAAGCTGCTGATGAGCATCAGGACCCCGGGCGTGGAGCGGTACTTAA
AGAGAGACCCCGAGGACCTGTTCAGGCACTACATGCTCAGCAAGGAGTAC
CCCAAGGTGCGCGCTCTCTATTCGGGCATGCTGTGTACGTGTGTGTTGCG
TTGTTGTCGTCGCTGCTGCTGCTGCTGCTGTTTAGTACTAGTACTGCTGT
AGTTGGTGTTGTTGTGATGATCGTGGTTATGCAACCTGTTGCTGCTGCAC
TTGTTGGCACAGCGGTGAGAAATCGACGCCATGCTTCTCTGTTCATTTAG
GCGGCGTGTTTCGACTGAAGGAGATCTCCAGCAGCAGTAAAACTCGAAAC
TGCCTCCATGGGCTGTTGGTGTTGTTACCAATCACATCGTTTTCTCTTCC
CCTCTCTGATGGAAGGCCGCACCCTCTCCTCCAAACCCTTCGCGAAACGA
TCTGGGAAGTACATCCCTCTCCTCCAAACCCATTCGCTCAACGAGCTGGG
GATGTTCCTCCCTTGCCTCCCTTTTGTCTTCCTCCTTCTCTCAAAGGCGG
TCTATCTGATGGATTGCCACCGAGTACTTCGTTGCATAGTGCCAACCGGC
TTCTTGCCAAAGCCCTTGGAGAAGGGCGTCCCTCTCCTTCAAGCCCTTTT
GCTTAAAACGATCTGCGATGTACGCGCCTCTCATGTCCTCCTTTCTTCCT
CCTCCTTTTGTCACTGGCGGTCCATCTGATGGATCACCATCTAGTCCTTC
GTTGTATAGTTCCAACCGGCTTCTGTGTCAAAGACCTTTCGCTCACGATT
TAAGACGTACGTGCCTCTCTCGTCCTCCGTTCTTGCTTCTTGTTCTGTCA
AAGGCGGTCCATCTGATGGACTGCGAGGCCCGCGTTGAGGCCAGGAGCGG
CGTGCACGTTAGGCACCGCGTGGAATGCCTGCTCAAGGCCATCTCGGCTT
GCCACAAGTGCGACCTCGACTCTGCCCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11007:112..1090+

>mRNA_Ecto-sp9_F_contig11007.893.1 ID=mRNA_Ecto-sp9_F_contig11007.893.1|Name=mRNA_Ecto-sp9_F_contig11007.893.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11007:112..1090+ (Ectocarpus species9 EcSCA_722f female)
ATGAGCATCAGGACCCCGGGCGTGGAGCGGTACTTAAAGAGAGACCCCGA
GGACCTGTTCAGGCACTACATGCTCAGCAAGGAGTACCCCAAGATGAGCA
TCAGGACCCCGGGCGTGGAGCGGTACTTAAAGAGAGACCCCGAGGACCTG
TTCAGGCACTACATGCTCAGCAAGGAGTACCCCAAGGCGGTCCATCTGAT
GGACTGCGAGGCCCGCGTTGAGGCCAGGAGCGGCGTGCACGTTAGGCACC
GCGTGGAATGCCTGCTCAAGGCCATCTCGGCTTGCCACAAGTGCGACCTC
GACTCTGCCCAGGCGGTCCATCTGATGGACTGCGAGGCCCGCGTTGAGGC
CAGGAGCGGCGTGCACGTTAGGCACCGCGTGGAATGCCTGCTCAAGGCCA
TCTCGGCTTGCCACAAGTGCGACCTCGACTCTGCCCAG
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