mRNA_Ecto-sp9_F_contig9525.17654.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9525.17654.1
Unique NamemRNA_Ecto-sp9_F_contig9525.17654.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD73_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 2.440e-56
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 1
Query:    1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGICSVGV 318
            PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATA GQYGTDYLI KFKRPSFIILSIASVVALSAFLMGINGLYDILHP AGGDEE+GICS GV
Sbjct:  400 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAMGQYGTDYLINKFKRPSFIILSIASVVALSAFLMGINGLYDILHPTAGGDEEDGICSAGV 505          
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ1_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.350e-34
Identity = 74/105 (70.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    4 MVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGICSVGV 318
            MVSSSTSAVMILFTSFTATTSFVVFGLLTF                            KRPSFIILSIASVVALSAFLMGINGLYDI+HP AGG+EENGICSVGV
Sbjct:    1 MVSSSTSAVMILFTSFTATTSFVVFGLLTF----------------------------KRPSFIILSIASVVALSAFLMGINGLYDIIHPTAGGEEENGICSVGV 77          
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV47_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.180e-30
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 1
Query:    4 MVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGICSVG 315
            MV+S+TSAVMIL+TSFTATTSF+VFGLL  DYA+ LF +GL ATA GQ   ++L++K+KR SFI+LSI +VVALSA +MG + LY+ + P    +   G CSVG
Sbjct:    1 MVASATSAVMILYTSFTATTSFMVFGLLEEDYAIALFVVGLAATAVGQVVVNHLVKKYKRTSFIVLSIGAVVALSAVMMGGHSLYNFMFPNPDEEGGGGFCSVG 104          
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFF2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.230e-26
Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGICSVG 315
            P V+S+TSA MILFTSFTATTSF+VFGLL  DYA  +F +GL+AT  GQ G +YL+++++R S II+SI +VVALSA LMG   LY +  P    DE  G C+ G
Sbjct:  119 PKVASATSACMILFTSFTATTSFMVFGLLRRDYAQLMFVVGLLATFVGQVGVNYLVQRYQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQD-DESGGFCAAG 222          
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Hypothetical (protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AWA8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.170e-25
Identity = 58/102 (56.86%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGIC 306
            P VSS++SA MILFTSFTATTSFVVFGLL  DYA+  F +G +AT  GQ G  YL++KF+R S+I  SI  VV LSAFLM I  LY +      G    G+C
Sbjct:   13 PKVSSASSACMILFTSFTATTSFVVFGLLIPDYAMICFTIGFLATLVGQIGLFYLMKKFQRNSYIAFSIGFVVLLSAFLMTIQSLYSMAEEPRKGHGSGGVC 114          
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCQ0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.650e-24
Identity = 54/81 (66.67%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMG 243
            P V+S+TSA MIL+TSFTAT+SF+ FG++ +DYA+ LFF+GLVATAAGQ G +YLI+K+KR S IILSI SVV+LS  +MG
Sbjct:  165 PAVASATSACMILYTSFTATSSFIAFGMVKYDYAIFLFFVGLVATAAGQLGVNYLIKKYKRQSLIILSIGSVVSLSTVMMG 245          
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.080e-24
Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGICSVG 315
            P V+S+TSA MILFTSFTATTSF+VFGLL  DYA  +F +GL+AT  GQ G +YL+++++R S II+SI +VVALSA LMG   LY +  P    DE  G C+ G
Sbjct:  419 PKVASATSACMILFTSFTATTSFMVFGLLRRDYAQLMFVVGLLATFVGQVGVNYLVQRYQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQD-DESGGFCAAG 522          
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAC9_CYCTE)

HSP 1 Score: 93.2 bits (230), Expect = 3.750e-22
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGIC 306
            P VSS++SA MILFTSFTATTSFVVFGLL  DYA     +G VAT AGQ G +YL+++++R S+I  SI  VV LSAFLM I  L  +   ++      G+C
Sbjct:   27 PAVSSASSACMILFTSFTATTSFVVFGLLVPDYAAVCLVIGFVATYAGQIGLNYLMKRYQRNSYIAFSIGGVVLLSAFLMTIQSLVSMAESSS--HHSGGVC 126          
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.610e-22
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILH-PAAGGDEENGIC 306
            P V++++SA MILFTSFTATTSF +F LL +DYAV LF +G + T+ GQYG  YL++++ R S+II SI +VV LSA LMG+  +  +   P +GG     IC
Sbjct:  418 PQVAAASSACMILFTSFTATTSFYIFDLLIYDYAVWLFIIGFLFTSVGQYGLSYLMKRYNRNSYIIFSIGAVVGLSALLMGLQSIISLFSGPGSGGKAGGAIC 520          
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VCU1_SYMMI)

HSP 1 Score: 96.3 bits (238), Expect = 2.120e-21
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDE 291
            PMV+++T AVMI  T+  ATTSF+ FG LTFDYA  LF  GL ATA GQ+G  YL++K+KR S I LSI +VVALS  LMG+  +  +L P    D+
Sbjct:  261 PMVAAATVAVMIFMTAIAATTSFIAFGTLTFDYAYYLFVFGLGATAIGQFGVAYLVKKYKRTSLISLSIGAVVALSTVLMGLQSVLSLLSPDGEQDD 357          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.440e-5695.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.350e-3470.48protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.180e-3059.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.230e-2657.14protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical7.170e-2556.86protein n=1 Tax=Minutocellus polymorphus TaxID=265... [more]
Hypothetical1.650e-2466.67protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Uncharacterized2.080e-2457.14protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical3.750e-2253.92protein n=1 Tax=Cyclophora tenuis TaxID=216820 Rep... [more]
Uncharacterized4.610e-2251.46protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Hypothetical2.120e-2154.64protein (Fragment) n=1 Tax=Symbiodinium microadria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9525contigEcto-sp9_F_contig9525:2693..4472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue6e-17
Seed eggNOG ortholog35128.Thaps20587
EggNOG free text desc.Sulfite exporter TauE/SafE
EggNOG OGs28PZK@1,2QWNB@2759,2XE4Z@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001320.1
Exons3
Model size333
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9525.17654.1prot_Ecto-sp9_F_contig9525.17654.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9525 2696..4460 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.1588552-UTR-Ecto-sp9_F_contig9525:2692..26951622931037.1588552-UTR-Ecto-sp9_F_contig9525:2692..2695Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9525 2693..2695 +
1692279003.1832218-UTR-Ecto-sp9_F_contig9525:2692..26951692279003.1832218-UTR-Ecto-sp9_F_contig9525:2692..2695Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9525 2693..2695 +
1622931037.249008-UTR-Ecto-sp9_F_contig9525:4460..44721622931037.249008-UTR-Ecto-sp9_F_contig9525:4460..4472Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9525 4461..4472 +
1692279003.2214177-UTR-Ecto-sp9_F_contig9525:4460..44721692279003.2214177-UTR-Ecto-sp9_F_contig9525:4460..4472Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9525 4461..4472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.18606-CDS-Ecto-sp9_F_contig9525:2695..27821622931037.18606-CDS-Ecto-sp9_F_contig9525:2695..2782Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9525 2696..2782 +
1692279003.1938887-CDS-Ecto-sp9_F_contig9525:2695..27821692279003.1938887-CDS-Ecto-sp9_F_contig9525:2695..2782Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9525 2696..2782 +
1622931037.2046735-CDS-Ecto-sp9_F_contig9525:3403..34871622931037.2046735-CDS-Ecto-sp9_F_contig9525:3403..3487Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9525 3404..3487 +
1692279003.2027755-CDS-Ecto-sp9_F_contig9525:3403..34871692279003.2027755-CDS-Ecto-sp9_F_contig9525:3403..3487Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9525 3404..3487 +
1622931037.2269711-CDS-Ecto-sp9_F_contig9525:4313..44601622931037.2269711-CDS-Ecto-sp9_F_contig9525:4313..4460Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9525 4314..4460 +
1692279003.2120848-CDS-Ecto-sp9_F_contig9525:4313..44601692279003.2120848-CDS-Ecto-sp9_F_contig9525:4313..4460Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9525 4314..4460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9525.17654.1

>prot_Ecto-sp9_F_contig9525.17654.1 ID=prot_Ecto-sp9_F_contig9525.17654.1|Name=mRNA_Ecto-sp9_F_contig9525.17654.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp
MVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYG
TDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGI
CSVGV*
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mRNA from alignment at Ecto-sp9_F_contig9525:2693..4472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9525.17654.1 ID=mRNA_Ecto-sp9_F_contig9525.17654.1|Name=mRNA_Ecto-sp9_F_contig9525.17654.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1780bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9525:2693..4472+ (Ectocarpus species9 EcSCA_722f female)
CCAATGGTCTCATCATCCACCTCCGCGGTTATGATCCTCTTCACCAGCTT CACCGCAACCACCAGCTTCGTCGTGTTCGGCTTGCTAACGGTAAGGAAGA AGCGACCAACCAAAATCGGCCCTTGCGGCGAACAAGGACAGAAGAGGGCT GCTGCTCTGGAGTAGAACGCATTGCATGCACCGAACGAATAGGAATGACG TGGTACTCGATGCACCCCATCGAGTTCGTCATCGCACCTTTCTCCATCTC CCTGACGGGTCATAAGACTTGGGAAACCATGAGAAGAGTAGGGTATGACC CCGCAGCCTGGGAGCTCGGAGACCACGACGAGCGGATAAGGCCGTGGAGT TTGTGTCACGAGAGACGATGGCCGCTGTGATGCCGATAACCCCCATCCGC TGCTGCTGCTCCGATGACATGGCAGTTGTCGTGTCGAATGTAAAAATGAA AACTGCAGCAGTGACGGTAGTACGCACTGCTTGCCTATCGTTCCGCCGTG AGGGGCTAGCTCCCAGTGTTGGTGGTTGGCACGTGAGGGATGGTTAATTT GCTCTTGTTCTTAGGAAAAATAAATACACACACAGAAAAACTACCCGTTC GAGAAATACCCACATTCGAAACCGGATGTGGTGGAGTTTTGTCAGTGAGT GTTCTTGCTGCTCCTCCTGCTGCTGCTGTTTTTGTTGTTGTGTTGTTTTC GTCGAGTTCAGTTTGATTACGCCGTGCCCTTGTTCTTCCTCGGGCTAGTG GCCACGGCGGCGGGGCAGTACGGCACCGACTACCTCATCGAAAAGGTAAG AAGGGAGACAGACGAGAACAACTCCCTCCAAGATTCCCGACAAGAAACAT CTCGTGCGCAGCCCACCCTGTGACCAGGTTTTTCTTTCGCGCAAAGGACA GAAACAACAAAATTGGAGTGTTAGGTGCTGTATGATCGCACAGCGGAAGC GAGTAGCGGCGGTTCAGAGCAAAGGCGGAGGGCCGACGAAAAGCTGGGCA CCCCATGAAGCTGGAGAGTTGAACGCAAGAGAAGCTTCCTTCTCTCGTGT CCCAACTGTGCCGGGAGCTCCCCCGTGTTTGGTTGGTTTTCATGCGGCGT TGGCCGGTACTGTGTAGAGCCAGACACGTCGCGTGAAGTGGTTCCGTGCC GTGGGCGCTAACTTCGACAGAGAAAAGCCAATGAGCGTGGCAATATTAGG ACCATCAATCAACTGAGACGAGCCGCAGCGAAACAACACGATGCTCACGT AATGATACGGAAGTAAGCCAATCAGCTTCAAGGAATGCCGGAACACCCAC CTTTTGAGACAGGAAGGGGAGGGGGGTAAATGTAAACCGTAGCAACCTCT CGGACTCTTTGCTCCAGAAACAGGGTTTGGACTGGGCCACCGGTCGGAAC AAAGCTGCCTATAGAGGTATTACATCGGCGAGCGGGCATATTATTCTCCT TCCAAAGTGTTCCTAAAACCCTTGACGCGCCTTCTCACCATCACGACCGT CCCCTCCCTCTGCAAACTGCTCCACCCAACTTTGGTCCGGGTGCATCTCG ACGATCGGTTTTCGAAAAACCGAATTGCAACAACACGAAAAACACCGGGA AAAAAACGGGAAAACGAACAGTTCAAGCGTCCGAGCTTCATCATCCTCTC CATTGCGTCGGTGGTGGCCCTGAGCGCGTTCCTCATGGGCATCAACGGCC TCTACGATATATTACATCCGGCCGCTGGAGGGGACGAGGAGAATGGTATC TGCTCCGTGGGAGTGTAAGAAATGTGTCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9525:2693..4472+

>mRNA_Ecto-sp9_F_contig9525.17654.1 ID=mRNA_Ecto-sp9_F_contig9525.17654.1|Name=mRNA_Ecto-sp9_F_contig9525.17654.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9525:2693..4472+ (Ectocarpus species9 EcSCA_722f female)
ATGGTCTCATCATCCACCTCCGCGGTTATGATCCTCTTCACCAGCTTCAC
CGCAACCACCAGCTTCGTCGTGTTCGGCTTGCTAACGATGGTCTCATCAT
CCACCTCCGCGGTTATGATCCTCTTCACCAGCTTCACCGCAACCACCAGC
TTCGTCGTGTTCGGCTTGCTAACGTTTGATTACGCCGTGCCCTTGTTCTT
CCTCGGGCTAGTGGCCACGGCGGCGGGGCAGTACGGCACCGACTACCTCA
TCGAAAAGTTTGATTACGCCGTGCCCTTGTTCTTCCTCGGGCTAGTGGCC
ACGGCGGCGGGGCAGTACGGCACCGACTACCTCATCGAAAAGTTCAAGCG
TCCGAGCTTCATCATCCTCTCCATTGCGTCGGTGGTGGCCCTGAGCGCGT
TCCTCATGGGCATCAACGGCCTCTACGATATATTACATCCGGCCGCTGGA
GGGGACGAGGAGAATGGTATCTGCTCCGTGGGAGTGTAATTCAAGCGTCC
GAGCTTCATCATCCTCTCCATTGCGTCGGTGGTGGCCCTGAGCGCGTTCC
TCATGGGCATCAACGGCCTCTACGATATATTACATCCGGCCGCTGGAGGG
GACGAGGAGAATGGTATCTGCTCCGTGGGAGTGTAA
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