mRNA_Ecto-sp9_F_contig9525.17654.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD73_9PHAE) HSP 1 Score: 191 bits (484), Expect = 2.440e-56 Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 1
Query: 1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGICSVGV 318
PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATA GQYGTDYLI KFKRPSFIILSIASVVALSAFLMGINGLYDILHP AGGDEE+GICS GV
Sbjct: 400 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAMGQYGTDYLINKFKRPSFIILSIASVVALSAFLMGINGLYDILHPTAGGDEEDGICSAGV 505
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ1_ECTSI) HSP 1 Score: 122 bits (305), Expect = 3.350e-34 Identity = 74/105 (70.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 4 MVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGICSVGV 318
MVSSSTSAVMILFTSFTATTSFVVFGLLTF KRPSFIILSIASVVALSAFLMGINGLYDI+HP AGG+EENGICSVGV
Sbjct: 1 MVSSSTSAVMILFTSFTATTSFVVFGLLTF----------------------------KRPSFIILSIASVVALSAFLMGINGLYDIIHPTAGGEEENGICSVGV 77
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV47_ECTSI) HSP 1 Score: 114 bits (284), Expect = 1.180e-30 Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 1
Query: 4 MVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGICSVG 315
MV+S+TSAVMIL+TSFTATTSF+VFGLL DYA+ LF +GL ATA GQ ++L++K+KR SFI+LSI +VVALSA +MG + LY+ + P + G CSVG
Sbjct: 1 MVASATSAVMILYTSFTATTSFMVFGLLEEDYAIALFVVGLAATAVGQVVVNHLVKKYKRTSFIVLSIGAVVALSAVMMGGHSLYNFMFPNPDEEGGGGFCSVG 104
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFF2_9STRA) HSP 1 Score: 105 bits (263), Expect = 4.230e-26 Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGICSVG 315
P V+S+TSA MILFTSFTATTSF+VFGLL DYA +F +GL+AT GQ G +YL+++++R S II+SI +VVALSA LMG LY + P DE G C+ G
Sbjct: 119 PKVASATSACMILFTSFTATTSFMVFGLLRRDYAQLMFVVGLLATFVGQVGVNYLVQRYQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQD-DESGGFCAAG 222
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Hypothetical (protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AWA8_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 7.170e-25 Identity = 58/102 (56.86%), Postives = 69/102 (67.65%), Query Frame = 1
Query: 1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGIC 306
P VSS++SA MILFTSFTATTSFVVFGLL DYA+ F +G +AT GQ G YL++KF+R S+I SI VV LSAFLM I LY + G G+C
Sbjct: 13 PKVSSASSACMILFTSFTATTSFVVFGLLIPDYAMICFTIGFLATLVGQIGLFYLMKKFQRNSYIAFSIGFVVLLSAFLMTIQSLYSMAEEPRKGHGSGGVC 114
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCQ0_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.650e-24 Identity = 54/81 (66.67%), Postives = 69/81 (85.19%), Query Frame = 1
Query: 1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMG 243
P V+S+TSA MIL+TSFTAT+SF+ FG++ +DYA+ LFF+GLVATAAGQ G +YLI+K+KR S IILSI SVV+LS +MG
Sbjct: 165 PAVASATSACMILYTSFTATSSFIAFGMVKYDYAIFLFFVGLVATAAGQLGVNYLIKKYKRQSLIILSIGSVVSLSTVMMG 245
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS5_9STRA) HSP 1 Score: 105 bits (263), Expect = 2.080e-24 Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 1
Query: 1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGICSVG 315
P V+S+TSA MILFTSFTATTSF+VFGLL DYA +F +GL+AT GQ G +YL+++++R S II+SI +VVALSA LMG LY + P DE G C+ G
Sbjct: 419 PKVASATSACMILFTSFTATTSFMVFGLLRRDYAQLMFVVGLLATFVGQVGVNYLVQRYQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQD-DESGGFCAAG 522
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAC9_CYCTE) HSP 1 Score: 93.2 bits (230), Expect = 3.750e-22 Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 1
Query: 1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDEENGIC 306
P VSS++SA MILFTSFTATTSFVVFGLL DYA +G VAT AGQ G +YL+++++R S+I SI VV LSAFLM I L + ++ G+C
Sbjct: 27 PAVSSASSACMILFTSFTATTSFVVFGLLVPDYAAVCLVIGFVATYAGQIGLNYLMKRYQRNSYIAFSIGGVVLLSAFLMTIQSLVSMAESSS--HHSGGVC 126
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X1_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 4.610e-22 Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 1
Query: 1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILH-PAAGGDEENGIC 306
P V++++SA MILFTSFTATTSF +F LL +DYAV LF +G + T+ GQYG YL++++ R S+II SI +VV LSA LMG+ + + P +GG IC
Sbjct: 418 PQVAAASSACMILFTSFTATTSFYIFDLLIYDYAVWLFIIGFLFTSVGQYGLSYLMKRYNRNSYIIFSIGAVVGLSALLMGLQSIISLFSGPGSGGKAGGAIC 520
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VCU1_SYMMI) HSP 1 Score: 96.3 bits (238), Expect = 2.120e-21 Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 1
Query: 1 PMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGTDYLIEKFKRPSFIILSIASVVALSAFLMGINGLYDILHPAAGGDE 291
PMV+++T AVMI T+ ATTSF+ FG LTFDYA LF GL ATA GQ+G YL++K+KR S I LSI +VVALS LMG+ + +L P D+
Sbjct: 261 PMVAAATVAVMIFMTAIAATTSFIAFGTLTFDYAYYLFVFGLGATAIGQFGVAYLVKKYKRTSLISLSIGAVVALSTVLMGLQSVLSLLSPDGEQDD 357 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9525.17654.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9525.17654.1 >prot_Ecto-sp9_F_contig9525.17654.1 ID=prot_Ecto-sp9_F_contig9525.17654.1|Name=mRNA_Ecto-sp9_F_contig9525.17654.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp MVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAAGQYGback to top mRNA from alignment at Ecto-sp9_F_contig9525:2693..4472+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9525.17654.1 ID=mRNA_Ecto-sp9_F_contig9525.17654.1|Name=mRNA_Ecto-sp9_F_contig9525.17654.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1780bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9525:2693..4472+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9525:2693..4472+ >mRNA_Ecto-sp9_F_contig9525.17654.1 ID=mRNA_Ecto-sp9_F_contig9525.17654.1|Name=mRNA_Ecto-sp9_F_contig9525.17654.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9525:2693..4472+ (Ectocarpus species9 EcSCA_722f female)back to top |