mRNA_Ecto-sp9_F_contig9375.17536.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Rieske ((2Fe-2S) domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX3_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 1.430e-15 Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1
Query: 49 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRL 159
SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRL
Sbjct: 586 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRL 622
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Rieske (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG4_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 5.000e-15 Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1
Query: 49 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSR 156
SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSR
Sbjct: 821 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSR 856
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSE0_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 4.200e-6 Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 1
Query: 49 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQP 144
S +GW+ETTYL+ +RI RGNKG++FVLT+ P
Sbjct: 248 SDSGWLETTYLDDDVRIGRGNKGTLFVLTKDP 279
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LER3_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 5.310e-6 Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1
Query: 1 LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTR 138
+SF F + K K + +S GW+ETTY++ +RI RGNKGS+F+LTR
Sbjct: 205 ISFLFDIRAKIKGSYDS--GWVETTYVSDSVRIGRGNKGSMFILTR 248
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: PAP_fibrillin (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYX8_THAPS) HSP 1 Score: 50.1 bits (118), Expect = 1.050e-5 Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1
Query: 1 LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTRQ 141
LSF F+ + K + GW+ETTYL+ +RI RGNKGS+FVLTR+
Sbjct: 216 LSFLFAIRGAIKGTNEA--GWVETTYLSDDLRIGRGNKGSLFVLTRE 260
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: PAP (fibrillin family protein n=2 Tax=Crinalium TaxID=241421 RepID=K9VW66_9CYAN) HSP 1 Score: 49.3 bits (116), Expect = 1.340e-5 Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1
Query: 40 NENSPTGWMETTYLNQGIRIARGNKGSIFVLTR 138
N N GW++ TYL++ +RI RGNKGS+FVLT+
Sbjct: 160 NSNDQQGWLDITYLDEDLRIGRGNKGSVFVLTK 192
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EBF1_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 1.470e-5 Identity = 19/29 (65.52%), Postives = 26/29 (89.66%), Query Frame = 1
Query: 58 GWMETTYLNQGIRIARGNKGSIFVLTRQP 144
GW+ETT++N+ +RI RGNKG++FVLTR P
Sbjct: 241 GWLETTHINKDMRIGRGNKGTLFVLTRDP 269
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Rieske (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEC4_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 1.600e-5 Identity = 19/31 (61.29%), Postives = 29/31 (93.55%), Query Frame = 1
Query: 58 GWMETTYLNQGIRIARGNKGSIFVLTRQPVS 150
GW++TT++++ IRI RGN+GSIFVLTR+P++
Sbjct: 905 GWLDTTFVDEHIRICRGNRGSIFVLTRRPLT 935
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: PAP_fibrillin (domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZS7_COCSC) HSP 1 Score: 48.5 bits (114), Expect = 1.830e-5 Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 1
Query: 1 LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTRQ 141
L F P K +PTGW++TTYL+ RI RG+KGS+FV RQ
Sbjct: 106 LKIGFLPALKIPLGFANPTGWVDTTYLDDDFRIGRGDKGSVFVTARQ 152
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Plastoglobulin-like (protein Pgl1 n=8 Tax=Cyanobacteria TaxID=1117 RepID=V5V5M0_9CYAN) HSP 1 Score: 48.9 bits (115), Expect = 1.870e-5 Identity = 19/33 (57.58%), Postives = 27/33 (81.82%), Query Frame = 1
Query: 40 NENSPTGWMETTYLNQGIRIARGNKGSIFVLTR 138
N N GW++ TYL++ +RI+RGN+GS+FVLTR
Sbjct: 160 NSNDQQGWLDITYLDEDLRISRGNEGSLFVLTR 192 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9375.17536.1 >prot_Ecto-sp9_F_contig9375.17536.1 ID=prot_Ecto-sp9_F_contig9375.17536.1|Name=mRNA_Ecto-sp9_F_contig9375.17536.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=53bp LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSback to top mRNA from alignment at Ecto-sp9_F_contig9375:5142..5300- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9375.17536.1 ID=mRNA_Ecto-sp9_F_contig9375.17536.1|Name=mRNA_Ecto-sp9_F_contig9375.17536.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9375:5142..5300- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9375:5142..5300- >mRNA_Ecto-sp9_F_contig9375.17536.1 ID=mRNA_Ecto-sp9_F_contig9375.17536.1|Name=mRNA_Ecto-sp9_F_contig9375.17536.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9375:5142..5300- (Ectocarpus species9 EcSCA_722f female)back to top |