mRNA_Ecto-sp9_F_contig9375.17536.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9375.17536.1
Unique NamemRNA_Ecto-sp9_F_contig9375.17536.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Rieske ((2Fe-2S) domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX3_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.430e-15
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1
Query:   49 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRL 159
            SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRL
Sbjct:  586 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSRL 622          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Rieske (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.000e-15
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   49 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSR 156
            SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSR
Sbjct:  821 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVSSR 856          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSE0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.200e-6
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 1
Query:   49 SPTGWMETTYLNQGIRIARGNKGSIFVLTRQP 144
            S +GW+ETTYL+  +RI RGNKG++FVLT+ P
Sbjct:  248 SDSGWLETTYLDDDVRIGRGNKGTLFVLTKDP 279          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LER3_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.310e-6
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTR 138
            +SF F  + K K + +S  GW+ETTY++  +RI RGNKGS+F+LTR
Sbjct:  205 ISFLFDIRAKIKGSYDS--GWVETTYVSDSVRIGRGNKGSMFILTR 248          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: PAP_fibrillin (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYX8_THAPS)

HSP 1 Score: 50.1 bits (118), Expect = 1.050e-5
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTRQ 141
            LSF F+ +   K    +  GW+ETTYL+  +RI RGNKGS+FVLTR+
Sbjct:  216 LSFLFAIRGAIKGTNEA--GWVETTYLSDDLRIGRGNKGSLFVLTRE 260          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: PAP (fibrillin family protein n=2 Tax=Crinalium TaxID=241421 RepID=K9VW66_9CYAN)

HSP 1 Score: 49.3 bits (116), Expect = 1.340e-5
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   40 NENSPTGWMETTYLNQGIRIARGNKGSIFVLTR 138
            N N   GW++ TYL++ +RI RGNKGS+FVLT+
Sbjct:  160 NSNDQQGWLDITYLDEDLRIGRGNKGSVFVLTK 192          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EBF1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.470e-5
Identity = 19/29 (65.52%), Postives = 26/29 (89.66%), Query Frame = 1
Query:   58 GWMETTYLNQGIRIARGNKGSIFVLTRQP 144
            GW+ETT++N+ +RI RGNKG++FVLTR P
Sbjct:  241 GWLETTHINKDMRIGRGNKGTLFVLTRDP 269          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Rieske (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEC4_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.600e-5
Identity = 19/31 (61.29%), Postives = 29/31 (93.55%), Query Frame = 1
Query:   58 GWMETTYLNQGIRIARGNKGSIFVLTRQPVS 150
            GW++TT++++ IRI RGN+GSIFVLTR+P++
Sbjct:  905 GWLDTTFVDEHIRICRGNRGSIFVLTRRPLT 935          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: PAP_fibrillin (domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZS7_COCSC)

HSP 1 Score: 48.5 bits (114), Expect = 1.830e-5
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 1
Query:    1 LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTRQ 141
            L   F P  K      +PTGW++TTYL+   RI RG+KGS+FV  RQ
Sbjct:  106 LKIGFLPALKIPLGFANPTGWVDTTYLDDDFRIGRGDKGSVFVTARQ 152          
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Match: Plastoglobulin-like (protein Pgl1 n=8 Tax=Cyanobacteria TaxID=1117 RepID=V5V5M0_9CYAN)

HSP 1 Score: 48.9 bits (115), Expect = 1.870e-5
Identity = 19/33 (57.58%), Postives = 27/33 (81.82%), Query Frame = 1
Query:   40 NENSPTGWMETTYLNQGIRIARGNKGSIFVLTR 138
            N N   GW++ TYL++ +RI+RGN+GS+FVLTR
Sbjct:  160 NSNDQQGWLDITYLDEDLRISRGNEGSLFVLTR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9375.17536.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Rieske1.430e-15100.00(2Fe-2S) domain protein n=1 Tax=Ectocarpus silicul... [more]
Rieske5.000e-15100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical4.200e-662.50protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical5.310e-652.17protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
PAP_fibrillin1.050e-553.19domain-containing protein n=1 Tax=Thalassiosira ps... [more]
PAP1.340e-557.58fibrillin family protein n=2 Tax=Crinalium TaxID=2... [more]
Hypothetical1.470e-565.52protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Rieske1.600e-561.29domain-containing protein n=3 Tax=Monodopsidaceae ... [more]
PAP_fibrillin1.830e-548.94domain-containing protein n=1 Tax=Coccomyxa subell... [more]
Plastoglobulin-like1.870e-557.58protein Pgl1 n=8 Tax=Cyanobacteria TaxID=1117 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9375contigEcto-sp9_F_contig9375:5142..5300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931018.0281804-CDS-Ecto-sp9_F_contig9375:5141..53001622931018.0281804-CDS-Ecto-sp9_F_contig9375:5141..5300Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9375 5142..5300 -
1692278994.8581479-CDS-Ecto-sp9_F_contig9375:5141..53001692278994.8581479-CDS-Ecto-sp9_F_contig9375:5141..5300Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9375 5142..5300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9375.17536.1prot_Ecto-sp9_F_contig9375.17536.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9375 5142..5300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9375.17536.1

>prot_Ecto-sp9_F_contig9375.17536.1 ID=prot_Ecto-sp9_F_contig9375.17536.1|Name=mRNA_Ecto-sp9_F_contig9375.17536.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=53bp
LSFFFSPQQKKKKNENSPTGWMETTYLNQGIRIARGNKGSIFVLTRQPVS
SRL
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mRNA from alignment at Ecto-sp9_F_contig9375:5142..5300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9375.17536.1 ID=mRNA_Ecto-sp9_F_contig9375.17536.1|Name=mRNA_Ecto-sp9_F_contig9375.17536.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9375:5142..5300- (Ectocarpus species9 EcSCA_722f female)
CTTTCGTTTTTTTTCTCGCCCCAACAAAAAAAAAAAAAAAACGAAAACAG CCCGACGGGATGGATGGAGACCACGTACCTGAACCAGGGCATTCGCATCG CGAGAGGGAACAAGGGCTCTATCTTTGTCCTCACGCGCCAGCCAGTGTCT TCTCGTCTT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9375:5142..5300-

>mRNA_Ecto-sp9_F_contig9375.17536.1 ID=mRNA_Ecto-sp9_F_contig9375.17536.1|Name=mRNA_Ecto-sp9_F_contig9375.17536.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9375:5142..5300- (Ectocarpus species9 EcSCA_722f female)
CTTTCGTTTTTTTTCTCGCCCCAACAAAAAAAAAAAAAAAACGAAAACAG
CCCGACGGGATGGATGGAGACCACGTACCTGAACCAGGGCATTCGCATCG
CGAGAGGGAACAAGGGCTCTATCTTTGTCCTCACGCGCCAGCCAGTGTCT
TCTCGTCTTCTTTCGTTTTTTTTCTCGCCCCAACAAAAAAAAAAAAAAAA
CGAAAACAGCCCGACGGGATGGATGGAGACCACGTACCTGAACCAGGGCA
TTCGCATCGCGAGAGGGAACAAGGGCTCTATCTTTGTCCTCACGCGCCAG
CCAGTGTCTTCTCGTCTT
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