mRNA_Ecto-sp9_F_contig9066.17253.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9066.17253.1
Unique NamemRNA_Ecto-sp9_F_contig9066.17253.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9066.17253.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR82_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 1.320e-117
Identity = 236/321 (73.52%), Postives = 245/321 (76.32%), Query Frame = 1 
Query:   10 VSSRGREGSGWGRRLNPAPPRQATEMLLSLSGSTTTENQQRGLSMPESXXXXXXXXXXXXPRSPSNTGHDVLTGAGAAAGVVKHGSMPIVGGWDELALGASTAAGSRAGRGSADGXXXXXXXXXXSRHA-----KEHGANGGSFTAPVLVDLAFADGAGPAAGGGIGANGGATRASAAATGVRGGFRVGRMSRSAERPQQDVSLPMRSPMGLSQQGHPQQQYFGGIQRAISVGHPVARGWDGGVSPSSAAGRPEPTGMRAATPPLGQHHQYNTGPSQPPPHPPEPCVFGQNPPPRNPPPGRALPRPPSPASFAGYGEPQQG 957
            V+SRGR+GSGWGRRLNPAPP+QATEMLL LSGSTT ENQ++GLSMPES            PRSP +TGHDVL GAGAAAG  K GSMPIVGGWDELALGASTAAG+RAGRGSA  XXXXXXXXXX         KEHGA+ GSFTAPVLVDLAF DG GPAAGGGI      TRASAAA GVRGG  VG M RSAERPQQDVSL MRSP+GLSQQGHPQQQYFGGIQRAISVGHPVARGWDGGV PS AAGRP PTGMRAATPPLGQ HQY TG                        PGRALPRPPSPASFAGYGE  QG
Sbjct:  326 VASRGRDGSGWGRRLNPAPPQQATEMLLLLSGSTTAENQRKGLSMPESSGRASPTTTT--PRSPFSTGHDVLAGAGAAAGAAKQGSMPIVGGWDELALGASTAAGARAGRGSAXXXXXXXXXXXXXXXXXXXXXKEHGASSGSFTAPVLVDLAFDDGTGPAAGGGIXXXXXXTRASAAAAGVRGGVCVGGMPRSAERPQQDVSLSMRSPVGLSQQGHPQQQYFGGIQRAISVGHPVARGWDGGVPPSPAAGRPGPTGMRAATPPLGQPHQYTTGXXXXXXXXXXXXXXXXXXXXXXXXPGRALPRPPSPASFAGYGEHHQG 644
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9066.17253.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.320e-11773.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9066contigEcto-sp9_F_contig9066:1976..2972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size997
Cds size996
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.5087512-CDS-Ecto-sp9_F_contig9066:1975..29711622930973.5087512-CDS-Ecto-sp9_F_contig9066:1975..2971Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9066 1976..2971 +
1692278974.6832197-CDS-Ecto-sp9_F_contig9066:1975..29711692278974.6832197-CDS-Ecto-sp9_F_contig9066:1975..2971Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9066 1976..2971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9066.17253.1prot_Ecto-sp9_F_contig9066.17253.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9066 1976..2971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9066.17253.1

>prot_Ecto-sp9_F_contig9066.17253.1 ID=prot_Ecto-sp9_F_contig9066.17253.1|Name=mRNA_Ecto-sp9_F_contig9066.17253.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=332bp
ASSVSSRGREGSGWGRRLNPAPPRQATEMLLSLSGSTTTENQQRGLSMPE
SSGGASPTTTTTTPRSPSNTGHDVLTGAGAAAGVVKHGSMPIVGGWDELA
LGASTAAGSRAGRGSADGGQQQQQQQQRSRHAKEHGANGGSFTAPVLVDL
AFADGAGPAAGGGIGANGGATRASAAATGVRGGFRVGRMSRSAERPQQDV
SLPMRSPMGLSQQGHPQQQYFGGIQRAISVGHPVARGWDGGVSPSSAAGR
PEPTGMRAATPPLGQHHQYNTGPSQPPPHPPEPCVFGQNPPPRNPPPGRA
LPRPPSPASFAGYGEPQQGAPHHHHHHPPPPP
back to top

mRNA from alignment at Ecto-sp9_F_contig9066:1976..2972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9066.17253.1 ID=mRNA_Ecto-sp9_F_contig9066.17253.1|Name=mRNA_Ecto-sp9_F_contig9066.17253.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=997bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9066:1976..2972+ (Ectocarpus species9 EcSCA_722f female)
GCCTCCTCGGTTTCCAGCAGGGGGAGGGAGGGGTCGGGCTGGGGCAGGAG
GCTCAATCCTGCGCCGCCGCGGCAGGCAACCGAGATGTTGCTGTCACTGT
CGGGGTCGACGACAACGGAGAATCAGCAGAGGGGCTTGTCGATGCCGGAG
TCCTCCGGGGGAGCCAGCCCAACAACAACGACCACGACCCCCAGGTCGCC
CTCTAACACCGGCCACGACGTGCTGACGGGAGCGGGGGCCGCCGCCGGCG
TGGTGAAGCACGGCAGCATGCCGATCGTGGGCGGGTGGGACGAGCTCGCA
CTCGGCGCCTCAACGGCGGCGGGGTCTCGAGCGGGGAGAGGGAGTGCGGA
CGGCGGGCAGCAGCAGCAGCAGCAGCAGCAGCGGTCGAGACATGCGAAGG
AGCACGGGGCCAACGGCGGAAGCTTCACGGCGCCTGTGCTCGTCGACCTA
GCTTTCGCCGACGGCGCGGGCCCGGCGGCGGGAGGAGGGATAGGGGCAAA
CGGCGGCGCAACCAGAGCTTCGGCAGCGGCAACGGGGGTCCGCGGGGGGT
TTCGTGTCGGGCGGATGTCGCGGTCGGCGGAGCGCCCGCAGCAGGACGTC
TCCCTTCCGATGCGGTCGCCCATGGGCCTCTCGCAGCAGGGGCACCCGCA
GCAGCAATATTTCGGGGGCATCCAGAGGGCGATCAGCGTGGGGCACCCTG
TTGCCAGGGGGTGGGACGGCGGCGTTTCGCCGTCGTCCGCGGCGGGGCGA
CCCGAGCCAACTGGCATGAGGGCGGCCACCCCGCCGTTAGGGCAACATCA
CCAGTACAACACTGGCCCGAGCCAGCCGCCGCCACATCCTCCAGAACCTT
GCGTGTTCGGTCAAAACCCGCCGCCGCGGAATCCCCCACCGGGTCGAGCC
CTGCCTCGGCCGCCGTCGCCGGCTTCGTTCGCGGGATACGGCGAGCCTCA
GCAGGGCGCGCCACATCACCACCACCACCACCCGCCGCCGCCGCCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9066:1976..2972+

>mRNA_Ecto-sp9_F_contig9066.17253.1 ID=mRNA_Ecto-sp9_F_contig9066.17253.1|Name=mRNA_Ecto-sp9_F_contig9066.17253.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1992bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9066:1976..2972+ (Ectocarpus species9 EcSCA_722f female)
GCCTCCTCGGTTTCCAGCAGGGGGAGGGAGGGGTCGGGCTGGGGCAGGAG
GCTCAATCCTGCGCCGCCGCGGCAGGCAACCGAGATGTTGCTGTCACTGT
CGGGGTCGACGACAACGGAGAATCAGCAGAGGGGCTTGTCGATGCCGGAG
TCCTCCGGGGGAGCCAGCCCAACAACAACGACCACGACCCCCAGGTCGCC
CTCTAACACCGGCCACGACGTGCTGACGGGAGCGGGGGCCGCCGCCGGCG
TGGTGAAGCACGGCAGCATGCCGATCGTGGGCGGGTGGGACGAGCTCGCA
CTCGGCGCCTCAACGGCGGCGGGGTCTCGAGCGGGGAGAGGGAGTGCGGA
CGGCGGGCAGCAGCAGCAGCAGCAGCAGCAGCGGTCGAGACATGCGAAGG
AGCACGGGGCCAACGGCGGAAGCTTCACGGCGCCTGTGCTCGTCGACCTA
GCTTTCGCCGACGGCGCGGGCCCGGCGGCGGGAGGAGGGATAGGGGCAAA
CGGCGGCGCAACCAGAGCTTCGGCAGCGGCAACGGGGGTCCGCGGGGGGT
TTCGTGTCGGGCGGATGTCGCGGTCGGCGGAGCGCCCGCAGCAGGACGTC
TCCCTTCCGATGCGGTCGCCCATGGGCCTCTCGCAGCAGGGGCACCCGCA
GCAGCAATATTTCGGGGGCATCCAGAGGGCGATCAGCGTGGGGCACCCTG
TTGCCAGGGGGTGGGACGGCGGCGTTTCGCCGTCGTCCGCGGCGGGGCGA
CCCGAGCCAACTGGCATGAGGGCGGCCACCCCGCCGTTAGGGCAACATCA
CCAGTACAACACTGGCCCGAGCCAGCCGCCGCCACATCCTCCAGAACCTT
GCGTGTTCGGTCAAAACCCGCCGCCGCGGAATCCCCCACCGGGTCGAGCC
CTGCCTCGGCCGCCGTCGCCGGCTTCGTTCGCGGGATACGGCGAGCCTCA
GCAGGGCGCGCCACATCACCACCACCACCACCCGCCGCCGCCGCCCGCCT
CCTCGGTTTCCAGCAGGGGGAGGGAGGGGTCGGGCTGGGGCAGGAGGCTC
AATCCTGCGCCGCCGCGGCAGGCAACCGAGATGTTGCTGTCACTGTCGGG
GTCGACGACAACGGAGAATCAGCAGAGGGGCTTGTCGATGCCGGAGTCCT
CCGGGGGAGCCAGCCCAACAACAACGACCACGACCCCCAGGTCGCCCTCT
AACACCGGCCACGACGTGCTGACGGGAGCGGGGGCCGCCGCCGGCGTGGT
GAAGCACGGCAGCATGCCGATCGTGGGCGGGTGGGACGAGCTCGCACTCG
GCGCCTCAACGGCGGCGGGGTCTCGAGCGGGGAGAGGGAGTGCGGACGGC
GGGCAGCAGCAGCAGCAGCAGCAGCAGCGGTCGAGACATGCGAAGGAGCA
CGGGGCCAACGGCGGAAGCTTCACGGCGCCTGTGCTCGTCGACCTAGCTT
TCGCCGACGGCGCGGGCCCGGCGGCGGGAGGAGGGATAGGGGCAAACGGC
GGCGCAACCAGAGCTTCGGCAGCGGCAACGGGGGTCCGCGGGGGGTTTCG
TGTCGGGCGGATGTCGCGGTCGGCGGAGCGCCCGCAGCAGGACGTCTCCC
TTCCGATGCGGTCGCCCATGGGCCTCTCGCAGCAGGGGCACCCGCAGCAG
CAATATTTCGGGGGCATCCAGAGGGCGATCAGCGTGGGGCACCCTGTTGC
CAGGGGGTGGGACGGCGGCGTTTCGCCGTCGTCCGCGGCGGGGCGACCCG
AGCCAACTGGCATGAGGGCGGCCACCCCGCCGTTAGGGCAACATCACCAG
TACAACACTGGCCCGAGCCAGCCGCCGCCACATCCTCCAGAACCTTGCGT
GTTCGGTCAAAACCCGCCGCCGCGGAATCCCCCACCGGGTCGAGCCCTGC
CTCGGCCGCCGTCGCCGGCTTCGTTCGCGGGATACGGCGAGCCTCAGCAG
GGCGCGCCACATCACCACCACCACCACCCGCCGCCGCCGCCC
back to top