mRNA_Ecto-sp9_F_contig9021.17218.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9021.17218.1
Unique NamemRNA_Ecto-sp9_F_contig9021.17218.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9021.17218.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT68_9PHAE)

HSP 1 Score: 606 bits (1563), Expect = 4.940e-211
Identity = 346/384 (90.10%), Postives = 351/384 (91.41%), Query Frame = 1 
Query:    1 MSDWISISKIRLQNIPVPVKGRPDFFRVVFFDGTMEVRTKSKRANLDGSVQWTERLEVLADDTAIKLVATVQQRSFLGDWVTGPDFHFIGSSLPSKWRHTSELPSAHKFYAELSVDRQEDLPPSTSTYKSEAHFRGPSKLPSPISSFSSSGPGSVRKGSDSYSPSSVAATSKTLLSSAVGXXXXXXXTRRGASLEGCSGSSAVSASRPARATHETRPRYSYPLRQEGGLWGVVGSTGMVLRSRPGLAMSQSFSWSPPASPIARPKDAPAFQQRAGASEAAGESSPPSSSCXXXXXXXXXXXXXXXXXERKWVTAGAAATGSGATLAPILPGPARSGSYSRPLAEPPAALADDLTAVQQFREAGGISPGNNSATTLDIVDGQRKL 1152
            MSDWISISKIRLQNIPVPV+GRPDFFRVVFFDGTMEVRTKSKRANLDG VQWTERLEVLADDTAIKLVATVQQRSFLGDWV GPDFHF GSSLPSKWRHTSELPSAHKFYAELSVD QE LPPSTS+ KSEAHFRGPSKLPSP S+FS SG GSVRKGSDS SPSSVAATSKTLLSSAVG       TRRGASLEG S SSAVSAS P+RATHETRPRYSYPLRQEGGLWGVVGSTGMVLRSRP LAMSQSFSWSPPASPIARPKDA AFQQR GASEAAGESSPPSSSCXXXXXXXXXXXXXXX  ERKWVTAGAAATGSGATLAPILPGPARSGS SR   EPP ALAD+LTAVQQFREA GISPGN  ATTLDIVDGQRKL
Sbjct:    1 MSDWISISKIRLQNIPVPVEGRPDFFRVVFFDGTMEVRTKSKRANLDGLVQWTERLEVLADDTAIKLVATVQQRSFLGDWVAGPDFHFSGSSLPSKWRHTSELPSAHKFYAELSVDCQEYLPPSTSSDKSEAHFRGPSKLPSP-SAFSFSGLGSVRKGSDSSSPSSVAATSKTLLSSAVGGGFFGDGTRRGASLEGFSASSAVSASWPSRATHETRPRYSYPLRQEGGLWGVVGSTGMVLRSRPLLAMSQSFSWSPPASPIARPKDASAFQQRVGASEAAGESSPPSSSCXXXXXXXXXXXXXXXAPERKWVTAGAAATGSGATLAPILPGPARSGSSSRRRVEPPVALADNLTAVQQFREADGISPGNKFATTLDIVDGQRKL 383
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BLAST of mRNA_Ecto-sp9_F_contig9021.17218.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY8_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 9.630e-63
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 3 
Query:  588 MLGLLRCVGVTAGTCNPRDQAAVQLSATTGGRAVGGGRLNRDGASFPSGVGDVAIVFLVTTSFSDRTAKRCSRFSAAGGRKRGCGRIVPAIVKLFLLVAPRLSVGIAR 911
            MLGLLRCVGVTAGTCNPRDQAAVQLSATTGGRAVGGGRLNRDGASFPSGVGDVAIVFLVTTSFSDRTAKRCSRFSAAGGRKRGCGRIV AIVKLFLLVAPRLSV IAR
Sbjct:    1 MLGLLRCVGVTAGTCNPRDQAAVQLSATTGGRAVGGGRLNRDGASFPSGVGDVAIVFLVTTSFSDRTAKRCSRFSAAGGRKRGCGRIVSAIVKLFLLVAPRLSVSIAR 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9021.17218.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.940e-21190.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.630e-6398.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9021contigEcto-sp9_F_contig9021:1945..5196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue1.9e-20
Seed eggNOG ortholog2880.D7FS71
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001570.1
Exons2
Model size1152
Cds size1152
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930968.071573-CDS-Ecto-sp9_F_contig9021:1944..19711622930968.071573-CDS-Ecto-sp9_F_contig9021:1944..1971Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9021 1945..1971 +
1692278972.2127354-CDS-Ecto-sp9_F_contig9021:1944..19711692278972.2127354-CDS-Ecto-sp9_F_contig9021:1944..1971Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9021 1945..1971 +
1622930968.092211-CDS-Ecto-sp9_F_contig9021:4071..51961622930968.092211-CDS-Ecto-sp9_F_contig9021:4071..5196Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9021 4072..5196 +
1692278972.224133-CDS-Ecto-sp9_F_contig9021:4071..51961692278972.224133-CDS-Ecto-sp9_F_contig9021:4071..5196Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9021 4072..5196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9021.17218.1prot_Ecto-sp9_F_contig9021.17218.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9021 1945..5196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9021.17218.1

>prot_Ecto-sp9_F_contig9021.17218.1 ID=prot_Ecto-sp9_F_contig9021.17218.1|Name=mRNA_Ecto-sp9_F_contig9021.17218.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=384bp
MSDWISISKIRLQNIPVPVKGRPDFFRVVFFDGTMEVRTKSKRANLDGSV
QWTERLEVLADDTAIKLVATVQQRSFLGDWVTGPDFHFIGSSLPSKWRHT
SELPSAHKFYAELSVDRQEDLPPSTSTYKSEAHFRGPSKLPSPISSFSSS
GPGSVRKGSDSYSPSSVAATSKTLLSSAVGGGFFGGGTRRGASLEGCSGS
SAVSASRPARATHETRPRYSYPLRQEGGLWGVVGSTGMVLRSRPGLAMSQ
SFSWSPPASPIARPKDAPAFQQRAGASEAAGESSPPSSSCFSWSPLVSPL
ALPDEAPERKWVTAGAAATGSGATLAPILPGPARSGSYSRPLAEPPAALA
DDLTAVQQFREAGGISPGNNSATTLDIVDGQRKL
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mRNA from alignment at Ecto-sp9_F_contig9021:1945..5196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9021.17218.1 ID=mRNA_Ecto-sp9_F_contig9021.17218.1|Name=mRNA_Ecto-sp9_F_contig9021.17218.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3252bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9021:1945..5196+ (Ectocarpus species9 EcSCA_722f female)
ATGTCTGATTGGATCTCAATTTCAAAGGTGCGAGCGATGCAGGCTCCTGA
TCGTTATTCTCGCTTGAGCGTGTTTGCTTTACACGTAATACTCTAGAGGC
TATTTATTGCACGGTACCGCGGTTGTACCCAAGCCGCAGGGTAGCAAGTG
GCAAGACGGTGTTGGACCTGTACATAGGGATGTGGCAGAAACGTACGAAG
AACGTTGATGGGAGCACGCAGCGCAGAAGTAACGTTATTTTGGCGACCGA
AGGCAAGAGCGGCGGATCGCCGGGTTGACCGCCGTTGCATGAAGCCTGTT
TCGAGTTCCGATCCGTGTCGACGCACGTGAAAATCACACCTACACGTAGT
AGCTGCCTTGGACGACCCGTAATTGAGCGGAGGATAAAGCTCGAGTCTGC
GAGTACAGCAGTGACAAAAAAGTTGGTTTGGGTCCAGATTTGCCAAGTTT
TAGTTCTTCGACCCAGTGTCCCCAGCAATAGATCTGAGTTTACCAGCATG
CACATATGCACATCGCTACTACATGGCGTCGTCTACTACCGGAGTTGTAT
TCCTGCGAGTACGGCAGTAAATTTAATACCGTATTTAGTTTCGTTTGCAA
TTAGTCGGTTGTACGTTGCGGGATTGTGTCTTTAGCATTGCCTGGTTGAA
GTACAACTTACCGAACATGCTTTTGGATTCCTATGCGTGCACCGCGGTGC
AACACATAAAAGGAATGTGGCGCCCCGATGTAACCCTCCCCGTATTGAAA
GTACCACCTGAAAAATGCCGCTGCACCGAAATTGTGGCTTCGGATTCACT
TGTGGTAGCGCGCCATCGTATGCCCGACGCGGGGTTTTGGATACATAGAT
AGGTCCAGACATCGGATAAATCAAGTTCAAGCACGCCGTTCTTGCTTTCT
TGCGCACCTCGTTGCGATGAATCCGAGGGTACAGACAAAGCCGACAGAGG
CGAGCACGCCAACAAACTAATAAATAATTACTCACCAGGGAATCACATCG
AGTTAATTAGTCCGTGGCACAAGCCATAACCTAGCCCGCATTCACCACTC
GCTGCAAGGGAACCCAAGCTGCTACGTACCAATATCAGTTTTCGTAACGC
CTTATTACAGGCGTGAGTGTGCTTTCCTGCGTAGCCTACATCGCAGACTT
GCTGGTCCCAGAAAGTCGCTACGCTGTTCAGTATTGCACCTATCCGTATC
ATCGCACCGGGGTGCCTGAATACAGCGGCATATTGTAGGATGAGCAAAGC
CAGCCTAGTTTTTTTTTTTCACCATCGCACCTGGAGTGATATGAAAAGCT
TGCCAAAATGTTTGATGTTTTTCCGCATCAAGATCGTGGTTTTCACACCC
ATCGGGGATATCGCACCGGCGTGTGACAATACGTGAAAACCGACATATTG
CCCCGGTGCCTTGGCCCGCACGATTACGGAAATATTTCACTCCGAAGAAT
TTTCTTGAGCACCCGCCGTGTGGGCTGTGTTCTCTTGAATGTTGAGACTG
GTATGTACAACTTTTTGCCGTAACAAGGAAGGGTGTGGAGGTAGGTTTCA
TGAAGCTGGTGGAAACAAACCCCAACTGCTCATCTGTGCGACAGACGACG
GGATGATTGTTGCTTAACGCGTTCGACCTCGCCCGTTGTACCTCGTGTGT
GATTGCTGGGAGATAATTTGTATTGTTTTCAAAACCAATCAAGAACCGAG
ATCGGCTGTATCACCCGCTCAGTGTCTCGCCTCCTAGATAAGTTCGGTGT
CAAGGTCCAACCTCTACGCTTTTACGTGCCTGTGCTGTTGGGTAACGATA
ACGAGTTCTTGGTGCTTGTTTCGCGCGGAATCCGGCATTTTGGACGGCAG
GAAGTGTGTGCTGCATACGACGTTTTGTGCTTGGAGCAAAGTGTTACCGA
GACTACACGTTGTAGGATTGGAAGTATAGGAACGACGAACAGGTCGTATC
TTGTTGGTGTCGTGATACTGTAGTCGGCATGCTGGAGACAACGAAGCAGA
CTTGCTACTGACTCGGATAATTTCACTAATGCGTTCACAAGCTTCATCGA
CACTGCGGACATGACCGAGAAAGCGAAGTCGGCACCAAAAACAAACCTTT
CCCTTCAACGTACTTCTCCGAATACAGATTCGGTTGCAGAATATACCGGT
GCCAGTGAAGGGACGCCCAGATTTCTTCAGGGTAGTGTTCTTCGATGGAA
CGATGGAGGTCAGGACGAAATCCAAACGAGCGAACCTTGACGGCTCGGTC
CAGTGGACAGAGCGGCTAGAGGTTCTGGCGGATGACACCGCCATCAAGCT
GGTGGCCACCGTTCAGCAGCGTAGTTTCCTCGGGGATTGGGTCACAGGGC
CCGACTTTCATTTCATTGGCTCCTCGCTGCCCAGCAAATGGCGTCATACG
TCCGAGCTCCCCTCCGCCCACAAGTTCTACGCCGAGCTGAGCGTCGATCG
TCAAGAAGACCTACCACCGTCCACAAGCACGTACAAGTCCGAGGCCCATT
TTCGTGGGCCCTCCAAGCTTCCTAGTCCTATTAGCTCTTTTAGTTCTTCA
GGGCCTGGTAGTGTTCGCAAGGGCAGCGACAGCTACTCCCCTTCCTCGGT
GGCCGCAACGTCGAAGACCTTGTTGTCATCTGCGGTTGGGGGCGGCTTCT
TCGGTGGTGGCACCAGACGAGGGGCCTCTTTAGAGGGATGCTCGGGCTCC
TCCGCTGTGTCGGCGTCACGGCCGGCACGTGCAACCCACGAGACCAGGCC
GCGGTACAGCTATCCGCTACGACAGGAGGGAGGGCTGTGGGGGGTGGTAG
GCTCAACAGGGATGGTGCTTCGTTCCCGTCCGGGGTTGGCGATGTCGCAA
TCGTTTTCTTGGTCACCACCAGCTTCTCCGATCGCACGGCCAAAAGATGC
TCCCGCTTTTCAGCAGCGGGCGGGCGCAAGCGAGGCTGCGGGAGAATCGT
CCCCGCCATCGTCAAGCTGTTTCTCTTGGTCGCCCCTCGTCTCTCCGTTG
GCATTGCCAGACGAAGCTCCTGAGAGAAAATGGGTAACGGCCGGGGCTGC
GGCAACGGGGAGTGGCGCAACTTTAGCACCGATTCTGCCGGGACCGGCGA
GGTCGGGGTCCTACTCTCGGCCGCTTGCAGAGCCTCCCGCAGCGTTGGCA
GATGATCTCACCGCAGTCCAGCAGTTCCGCGAGGCCGGTGGGATTTCCCC
AGGGAATAATTCTGCGACTACGCTGGATATTGTGGATGGACAACGCAAGT
TG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9021:1945..5196+

>mRNA_Ecto-sp9_F_contig9021.17218.1 ID=mRNA_Ecto-sp9_F_contig9021.17218.1|Name=mRNA_Ecto-sp9_F_contig9021.17218.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2304bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9021:1945..5196+ (Ectocarpus species9 EcSCA_722f female)
ATGTCTGATTGGATCTCAATTTCAAAGATGTCTGATTGGATCTCAATTTC
AAAGATTCGGTTGCAGAATATACCGGTGCCAGTGAAGGGACGCCCAGATT
TCTTCAGGGTAGTGTTCTTCGATGGAACGATGGAGGTCAGGACGAAATCC
AAACGAGCGAACCTTGACGGCTCGGTCCAGTGGACAGAGCGGCTAGAGGT
TCTGGCGGATGACACCGCCATCAAGCTGGTGGCCACCGTTCAGCAGCGTA
GTTTCCTCGGGGATTGGGTCACAGGGCCCGACTTTCATTTCATTGGCTCC
TCGCTGCCCAGCAAATGGCGTCATACGTCCGAGCTCCCCTCCGCCCACAA
GTTCTACGCCGAGCTGAGCGTCGATCGTCAAGAAGACCTACCACCGTCCA
CAAGCACGTACAAGTCCGAGGCCCATTTTCGTGGGCCCTCCAAGCTTCCT
AGTCCTATTAGCTCTTTTAGTTCTTCAGGGCCTGGTAGTGTTCGCAAGGG
CAGCGACAGCTACTCCCCTTCCTCGGTGGCCGCAACGTCGAAGACCTTGT
TGTCATCTGCGGTTGGGGGCGGCTTCTTCGGTGGTGGCACCAGACGAGGG
GCCTCTTTAGAGGGATGCTCGGGCTCCTCCGCTGTGTCGGCGTCACGGCC
GGCACGTGCAACCCACGAGACCAGGCCGCGGTACAGCTATCCGCTACGAC
AGGAGGGAGGGCTGTGGGGGGTGGTAGGCTCAACAGGGATGGTGCTTCGT
TCCCGTCCGGGGTTGGCGATGTCGCAATCGTTTTCTTGGTCACCACCAGC
TTCTCCGATCGCACGGCCAAAAGATGCTCCCGCTTTTCAGCAGCGGGCGG
GCGCAAGCGAGGCTGCGGGAGAATCGTCCCCGCCATCGTCAAGCTGTTTC
TCTTGGTCGCCCCTCGTCTCTCCGTTGGCATTGCCAGACGAAGCTCCTGA
GAGAAAATGGGTAACGGCCGGGGCTGCGGCAACGGGGAGTGGCGCAACTT
TAGCACCGATTCTGCCGGGACCGGCGAGGTCGGGGTCCTACTCTCGGCCG
CTTGCAGAGCCTCCCGCAGCGTTGGCAGATGATCTCACCGCAGTCCAGCA
GTTCCGCGAGGCCGGTGGGATTTCCCCAGGGAATAATTCTGCGACTACGC
TGGATATTGTGGATGGACAACGCAAGTTGATTCGGTTGCAGAATATACCG
GTGCCAGTGAAGGGACGCCCAGATTTCTTCAGGGTAGTGTTCTTCGATGG
AACGATGGAGGTCAGGACGAAATCCAAACGAGCGAACCTTGACGGCTCGG
TCCAGTGGACAGAGCGGCTAGAGGTTCTGGCGGATGACACCGCCATCAAG
CTGGTGGCCACCGTTCAGCAGCGTAGTTTCCTCGGGGATTGGGTCACAGG
GCCCGACTTTCATTTCATTGGCTCCTCGCTGCCCAGCAAATGGCGTCATA
CGTCCGAGCTCCCCTCCGCCCACAAGTTCTACGCCGAGCTGAGCGTCGAT
CGTCAAGAAGACCTACCACCGTCCACAAGCACGTACAAGTCCGAGGCCCA
TTTTCGTGGGCCCTCCAAGCTTCCTAGTCCTATTAGCTCTTTTAGTTCTT
CAGGGCCTGGTAGTGTTCGCAAGGGCAGCGACAGCTACTCCCCTTCCTCG
GTGGCCGCAACGTCGAAGACCTTGTTGTCATCTGCGGTTGGGGGCGGCTT
CTTCGGTGGTGGCACCAGACGAGGGGCCTCTTTAGAGGGATGCTCGGGCT
CCTCCGCTGTGTCGGCGTCACGGCCGGCACGTGCAACCCACGAGACCAGG
CCGCGGTACAGCTATCCGCTACGACAGGAGGGAGGGCTGTGGGGGGTGGT
AGGCTCAACAGGGATGGTGCTTCGTTCCCGTCCGGGGTTGGCGATGTCGC
AATCGTTTTCTTGGTCACCACCAGCTTCTCCGATCGCACGGCCAAAAGAT
GCTCCCGCTTTTCAGCAGCGGGCGGGCGCAAGCGAGGCTGCGGGAGAATC
GTCCCCGCCATCGTCAAGCTGTTTCTCTTGGTCGCCCCTCGTCTCTCCGT
TGGCATTGCCAGACGAAGCTCCTGAGAGAAAATGGGTAACGGCCGGGGCT
GCGGCAACGGGGAGTGGCGCAACTTTAGCACCGATTCTGCCGGGACCGGC
GAGGTCGGGGTCCTACTCTCGGCCGCTTGCAGAGCCTCCCGCAGCGTTGG
CAGATGATCTCACCGCAGTCCAGCAGTTCCGCGAGGCCGGTGGGATTTCC
CCAGGGAATAATTCTGCGACTACGCTGGATATTGTGGATGGACAACGCAA
GTTG
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