mRNA_Ecto-sp9_F_contig8920.17110.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: RAC, (RHO family GTPase n=3 Tax=Phaeophyceae TaxID=2870 RepID=D8LIW3_ECTSI) HSP 1 Score: 244 bits (624), Expect = 6.250e-81 Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 1
Query: 1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVIS 369
+ DVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVIS
Sbjct: 74 QTDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVIS 196
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Rho (family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z467_9STRA) HSP 1 Score: 159 bits (403), Expect = 2.370e-47 Identity = 78/100 (78.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query: 1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAI 300
+ DVFLVCFSVVD TSF NVKLKWIPELQ HA G+PFILVGTK+DLR+D A + LAERRQ PISF+EAQ LA+EL AYRY+ECSALTQ GLK VFDGAI
Sbjct: 74 QTDVFLVCFSVVDTTSFQNVKLKWIPELQHHAAGVPFILVGTKMDLRNDSKALRSLAERRQQPISFNEAQNLANELGAYRYMECSALTQQGLKHVFDGAI 173
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Ras-like (protein Rac1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJ94_SAPPC) HSP 1 Score: 154 bits (390), Expect = 2.290e-45 Identity = 75/122 (61.48%), Postives = 95/122 (77.87%), Query Frame = 1
Query: 1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVI 366
+ DVFL+CFSVV P SF NVK KW PE+Q HAPG+PFILVGTKLDLR+D+D +RL E+R P++ +AL +EL A++YLECSALTQ GLKQVFD +IRCVL+ +Q+ KKK+ +C I
Sbjct: 76 QTDVFLICFSVVSPASFENVKAKWYPEIQHHAPGVPFILVGTKLDLREDEDTVERLKEKRSAPVTHEMGEALKNELGAFKYLECSALTQKGLKQVFDESIRCVLQ-HQKNPKKKRS--HCTI 194
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Rac1 (n=1 Tax=Eurychasma dicksonii TaxID=159317 RepID=A0A1B3SNZ7_9STRA) HSP 1 Score: 153 bits (387), Expect = 6.150e-45 Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1
Query: 1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVL 312
+ DVFL+CFSVV P SF NVK KW PE+Q HAPG+PFILVGTKLDLRDD++ +RL E+R +PI+ + +AL SEL AY+YLECSALTQ GLKQVFD AIRCV+
Sbjct: 74 QTDVFLICFSVVRPASFENVKAKWYPEIQHHAPGVPFILVGTKLDLRDDEETIERLREKRLSPITPEQGEALRSELGAYKYLECSALTQKGLKQVFDEAIRCVI 177
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6L3_AURAN) HSP 1 Score: 152 bits (385), Expect = 1.240e-44 Identity = 72/122 (59.02%), Postives = 95/122 (77.87%), Query Frame = 1
Query: 1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVI 366
+ DVFL+CFS+ +P SF N++ KW PE+ HAPG+PFILVGTKLDLR+D D RL ++R+ P++ E +ALA+EL+AY+Y+ECSALTQ GLK VFD AIRCV++ Q+K KKK K CV+
Sbjct: 74 QTDVFLLCFSITNPNSFENIRTKWYPEINHHAPGVPFILVGTKLDLRNDPDTIARLQQKRRAPVNTEEGEALANELNAYKYIECSALTQQGLKGVFDDAIRCVID-TQKKPKKKS--KRCVL 192
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Aste57867_18068 (protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A485LAI3_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.390e-44 Identity = 75/118 (63.56%), Postives = 91/118 (77.12%), Query Frame = 1
Query: 1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLE--RNQRKMKKKKG 348
+ DVFL+CFSVV P SF NVK KW PE+Q HAPGIPFILVGTKLDLRDD++ +RL E+R PI+ + +AL +EL AY+YLECSAL Q GLKQVFD IRCVL+ +N +K +K G
Sbjct: 74 QTDVFLICFSVVSPASFENVKAKWFPEIQHHAPGIPFILVGTKLDLRDDEETIERLKEKRLKPITTEQGEALKNELGAYKYLECSALNQKGLKQVFDEGIRCVLQHQKNPKKSTRKFG 191
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6J5_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.420e-43 Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 1
Query: 1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVIS 369
+ DVFL+CFS+ +PTSF NV+ KW PE+ SHAPG+PFILVGTKLDLR+D + RL ++R+ P++ + LA EL AY+Y+ECSALTQ GLK VFD +IRCVL+ + K KK KK CV++
Sbjct: 74 QTDVFLLCFSITNPTSFENVRTKWYPEIASHAPGVPFILVGTKLDLRNDPETVARLQQKRRMPVNSEDGMQLARELGAYKYIECSALTQQGLKGVFDDSIRCVLDAMK---KPKKKKKKCVVA 193
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBT2_GLOUD) HSP 1 Score: 149 bits (375), Expect = 4.300e-43 Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = 1
Query: 1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGK 351
+ DVFL+CFS+V SF NVK KW+PE++ HAPG+PFILVGTKLDLRDD D ++L E++ TPI+ + ++L +EL A++YLECSALTQ GLKQVFD IRCVL Q +++GK
Sbjct: 74 QTDVFLICFSLVSRASFENVKSKWLPEIRHHAPGVPFILVGTKLDLRDDHDTLEKLREKKMTPITTEQGESLKNELGAFKYLECSALTQKGLKQVFDEGIRCVLTNQQNPKGRQRGK 190
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: RAC1 (protein (Fragment) n=8 Tax=Opisthokonta TaxID=33154 RepID=A0A851USK2_9PASS) HSP 1 Score: 148 bits (373), Expect = 8.890e-43 Identity = 71/122 (58.20%), Postives = 90/122 (73.77%), Query Frame = 1
Query: 1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVI 366
+ DVFL+CFSVV P SF N++ KW PE+Q H+PG P ILVGTKLDLRDD + ++L ERRQ PI +S+ A+A+++ A +YLECSALTQ GLK VFD AIR VL N+R K KK C++
Sbjct: 74 QTDVFLLCFSVVSPPSFENIRTKWWPEIQHHSPGTPIILVGTKLDLRDDPNQIEKLRERRQAPIGYSQGSAMANDIKAAKYLECSALTQKGLKTVFDEAIRTVLNPNRRAGKAKKSGSGCIL 195
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Rho-like (family small GTPase n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XL52_9TREE) HSP 1 Score: 147 bits (371), Expect = 2.010e-42 Identity = 73/122 (59.84%), Postives = 91/122 (74.59%), Query Frame = 1
Query: 1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVI 366
+ DVFL+CFSVV P SF N++ KW PE+Q H+PG P ILVGTKLDLRDD A +RL ERR PI +++ A+A+++ A RYLECSALTQ GLK VFD AIR VL N+R ++KG NCV+
Sbjct: 79 QTDVFLLCFSVVSPASFENIRTKWFPEIQHHSPGTPIILVGTKLDLRDDPAALERLRERRSQPIQYTQGAAMANDIRAARYLECSALTQVGLKTVFDQAIRTVLNPNRRSNGRRKGN-NCVL 199 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8920.17110.1 >prot_Ecto-sp9_F_contig8920.17110.1 ID=prot_Ecto-sp9_F_contig8920.17110.1|Name=mRNA_Ecto-sp9_F_contig8920.17110.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=124bp EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQback to top mRNA from alignment at Ecto-sp9_F_contig8920:3210..4244- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8920.17110.1 ID=mRNA_Ecto-sp9_F_contig8920.17110.1|Name=mRNA_Ecto-sp9_F_contig8920.17110.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1035bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8920:3210..4244- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8920:3210..4244- >mRNA_Ecto-sp9_F_contig8920.17110.1 ID=mRNA_Ecto-sp9_F_contig8920.17110.1|Name=mRNA_Ecto-sp9_F_contig8920.17110.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8920:3210..4244- (Ectocarpus species9 EcSCA_722f female)back to top |