mRNA_Ecto-sp9_F_contig8920.17110.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8920.17110.1
Unique NamemRNA_Ecto-sp9_F_contig8920.17110.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: RAC, (RHO family GTPase n=3 Tax=Phaeophyceae TaxID=2870 RepID=D8LIW3_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 6.250e-81
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 1
Query:    1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVIS 369
            + DVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVIS
Sbjct:   74 QTDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVIS 196          
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Rho (family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z467_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.370e-47
Identity = 78/100 (78.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query:    1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAI 300
            + DVFLVCFSVVD TSF NVKLKWIPELQ HA G+PFILVGTK+DLR+D  A + LAERRQ PISF+EAQ LA+EL AYRY+ECSALTQ GLK VFDGAI
Sbjct:   74 QTDVFLVCFSVVDTTSFQNVKLKWIPELQHHAAGVPFILVGTKMDLRNDSKALRSLAERRQQPISFNEAQNLANELGAYRYMECSALTQQGLKHVFDGAI 173          
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Ras-like (protein Rac1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJ94_SAPPC)

HSP 1 Score: 154 bits (390), Expect = 2.290e-45
Identity = 75/122 (61.48%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVI 366
            + DVFL+CFSVV P SF NVK KW PE+Q HAPG+PFILVGTKLDLR+D+D  +RL E+R  P++    +AL +EL A++YLECSALTQ GLKQVFD +IRCVL+ +Q+  KKK+   +C I
Sbjct:   76 QTDVFLICFSVVSPASFENVKAKWYPEIQHHAPGVPFILVGTKLDLREDEDTVERLKEKRSAPVTHEMGEALKNELGAFKYLECSALTQKGLKQVFDESIRCVLQ-HQKNPKKKRS--HCTI 194          
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Rac1 (n=1 Tax=Eurychasma dicksonii TaxID=159317 RepID=A0A1B3SNZ7_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.150e-45
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVL 312
            + DVFL+CFSVV P SF NVK KW PE+Q HAPG+PFILVGTKLDLRDD++  +RL E+R +PI+  + +AL SEL AY+YLECSALTQ GLKQVFD AIRCV+
Sbjct:   74 QTDVFLICFSVVRPASFENVKAKWYPEIQHHAPGVPFILVGTKLDLRDDEETIERLREKRLSPITPEQGEALRSELGAYKYLECSALTQKGLKQVFDEAIRCVI 177          
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6L3_AURAN)

HSP 1 Score: 152 bits (385), Expect = 1.240e-44
Identity = 72/122 (59.02%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVI 366
            + DVFL+CFS+ +P SF N++ KW PE+  HAPG+PFILVGTKLDLR+D D   RL ++R+ P++  E +ALA+EL+AY+Y+ECSALTQ GLK VFD AIRCV++  Q+K KKK   K CV+
Sbjct:   74 QTDVFLLCFSITNPNSFENIRTKWYPEINHHAPGVPFILVGTKLDLRNDPDTIARLQQKRRAPVNTEEGEALANELNAYKYIECSALTQQGLKGVFDDAIRCVID-TQKKPKKKS--KRCVL 192          
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Aste57867_18068 (protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A485LAI3_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.390e-44
Identity = 75/118 (63.56%), Postives = 91/118 (77.12%), Query Frame = 1
Query:    1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLE--RNQRKMKKKKG 348
            + DVFL+CFSVV P SF NVK KW PE+Q HAPGIPFILVGTKLDLRDD++  +RL E+R  PI+  + +AL +EL AY+YLECSAL Q GLKQVFD  IRCVL+  +N +K  +K G
Sbjct:   74 QTDVFLICFSVVSPASFENVKAKWFPEIQHHAPGIPFILVGTKLDLRDDEETIERLKEKRLKPITTEQGEALKNELGAYKYLECSALNQKGLKQVFDEGIRCVLQHQKNPKKSTRKFG 191          
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6J5_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.420e-43
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVIS 369
            + DVFL+CFS+ +PTSF NV+ KW PE+ SHAPG+PFILVGTKLDLR+D +   RL ++R+ P++  +   LA EL AY+Y+ECSALTQ GLK VFD +IRCVL+  +   K KK KK CV++
Sbjct:   74 QTDVFLLCFSITNPTSFENVRTKWYPEIASHAPGVPFILVGTKLDLRNDPETVARLQQKRRMPVNSEDGMQLARELGAYKYIECSALTQQGLKGVFDDSIRCVLDAMK---KPKKKKKKCVVA 193          
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBT2_GLOUD)

HSP 1 Score: 149 bits (375), Expect = 4.300e-43
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = 1
Query:    1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGK 351
            + DVFL+CFS+V   SF NVK KW+PE++ HAPG+PFILVGTKLDLRDD D  ++L E++ TPI+  + ++L +EL A++YLECSALTQ GLKQVFD  IRCVL   Q    +++GK
Sbjct:   74 QTDVFLICFSLVSRASFENVKSKWLPEIRHHAPGVPFILVGTKLDLRDDHDTLEKLREKKMTPITTEQGESLKNELGAFKYLECSALTQKGLKQVFDEGIRCVLTNQQNPKGRQRGK 190          
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: RAC1 (protein (Fragment) n=8 Tax=Opisthokonta TaxID=33154 RepID=A0A851USK2_9PASS)

HSP 1 Score: 148 bits (373), Expect = 8.890e-43
Identity = 71/122 (58.20%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVI 366
            + DVFL+CFSVV P SF N++ KW PE+Q H+PG P ILVGTKLDLRDD +  ++L ERRQ PI +S+  A+A+++ A +YLECSALTQ GLK VFD AIR VL  N+R  K KK    C++
Sbjct:   74 QTDVFLLCFSVVSPPSFENIRTKWWPEIQHHSPGTPIILVGTKLDLRDDPNQIEKLRERRQAPIGYSQGSAMANDIKAAKYLECSALTQKGLKTVFDEAIRTVLNPNRRAGKAKKSGSGCIL 195          
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Match: Rho-like (family small GTPase n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XL52_9TREE)

HSP 1 Score: 147 bits (371), Expect = 2.010e-42
Identity = 73/122 (59.84%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    1 EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQDACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAIRCVLERNQRKMKKKKGKKNCVI 366
            + DVFL+CFSVV P SF N++ KW PE+Q H+PG P ILVGTKLDLRDD  A +RL ERR  PI +++  A+A+++ A RYLECSALTQ GLK VFD AIR VL  N+R   ++KG  NCV+
Sbjct:   79 QTDVFLLCFSVVSPASFENIRTKWFPEIQHHSPGTPIILVGTKLDLRDDPAALERLRERRSQPIQYTQGAAMANDIRAARYLECSALTQVGLKTVFDQAIRTVLNPNRRSNGRRKGN-NCVL 199          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8920.17110.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RAC,6.250e-8198.37RHO family GTPase n=3 Tax=Phaeophyceae TaxID=2870 ... [more]
Rho2.370e-4778.00family GTPase n=1 Tax=Tribonema minus TaxID=303371... [more]
Ras-like2.290e-4561.48protein Rac1 n=4 Tax=Saprolegniaceae TaxID=4764 Re... [more]
Rac16.150e-4569.23n=1 Tax=Eurychasma dicksonii TaxID=159317 RepID=A0... [more]
Uncharacterized1.240e-4459.02protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
Aste57867_180681.390e-4463.56protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A... [more]
Hypothetical1.420e-4357.72protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Uncharacterized4.300e-4358.97protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
RAC18.890e-4358.20protein (Fragment) n=8 Tax=Opisthokonta TaxID=3315... [more]
Rho-like2.010e-4259.84family small GTPase n=1 Tax=Cutaneotrichosporon ol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8920contigEcto-sp9_F_contig8920:3210..4244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.4
Seed ortholog evalue1.7e-63
Seed eggNOG ortholog2880.D8LIW3
KEGG koko:K04392,ko:K07975
KEGG Pathwayko04010,ko04013,ko04014,ko04015,ko04024,ko04062,ko04071,ko04145,ko04151,ko04310,ko04360,ko04370,ko04380,ko04510,ko04520,ko04530,ko04620,ko04650,ko04662,ko04664,ko04666,ko04670,ko04722,ko04810,ko04932,ko04933,ko04972,ko05014,ko05100,ko05120,ko05131,ko05132,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05231,ko05416,ko05418,map04010,map04013,map04014,map04015,map04024,map04062,map04071,map04145,map04151,map04310,map04360,map04370,map04380,map04510,map04520,map04530,map04620,map04650,map04662,map04664,map04666,map04670,map04722,map04810,map04932,map04933,map04972,map05014,map05100,map05120,map05131,map05132,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05231,map05416,map05418
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0393@2759
Ec32 ortholog descriptionRAC, RHO family GTPase
Ec32 orthologEc-20_001790.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8920.17110.1prot_Ecto-sp9_F_contig8920.17110.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8920 3210..4244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.8558354-CDS-Ecto-sp9_F_contig8920:3209..32991622930949.8558354-CDS-Ecto-sp9_F_contig8920:3209..3299Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8920 3210..3299 -
1692278963.2799103-CDS-Ecto-sp9_F_contig8920:3209..32991692278963.2799103-CDS-Ecto-sp9_F_contig8920:3209..3299Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8920 3210..3299 -
1622930949.8682504-CDS-Ecto-sp9_F_contig8920:3609..37921622930949.8682504-CDS-Ecto-sp9_F_contig8920:3609..3792Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8920 3610..3792 -
1692278963.2905831-CDS-Ecto-sp9_F_contig8920:3609..37921692278963.2905831-CDS-Ecto-sp9_F_contig8920:3609..3792Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8920 3610..3792 -
1622930949.891451-CDS-Ecto-sp9_F_contig8920:4145..42441622930949.891451-CDS-Ecto-sp9_F_contig8920:4145..4244Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8920 4146..4244 -
1692278963.2989259-CDS-Ecto-sp9_F_contig8920:4145..42441692278963.2989259-CDS-Ecto-sp9_F_contig8920:4145..4244Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8920 4146..4244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8920.17110.1

>prot_Ecto-sp9_F_contig8920.17110.1 ID=prot_Ecto-sp9_F_contig8920.17110.1|Name=mRNA_Ecto-sp9_F_contig8920.17110.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=124bp
EKDVFLVCFSVVDPTSFHNVKLKWIPELQSHAPGIPFILVGTKLDLRDDQ
DACKRLAERRQTPISFSEAQALASELDAYRYLECSALTQHGLKQVFDGAI
RCVLERNQRKMKKKKGKKNCVIS*
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mRNA from alignment at Ecto-sp9_F_contig8920:3210..4244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8920.17110.1 ID=mRNA_Ecto-sp9_F_contig8920.17110.1|Name=mRNA_Ecto-sp9_F_contig8920.17110.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1035bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8920:3210..4244- (Ectocarpus species9 EcSCA_722f female)
GAAAAGGATGTCTTCCTCGTCTGTTTCAGCGTGGTGGACCCCACCAGCTT CCATAACGTGAAGCTTAAGTGGATACCCGAGCTACAGAGTCATGCTCCGG TGAGGATGAGCCAGCAGAGTCTCTCTCCGGTATACGGTTAATGTATGTAC CAGCGGGCGTCTTTCCGATCGGTGTCTTGCTAGTCACGGGTGAATCCTGT GTGTCTTGTATTTGCGTCGATATGTGTGCCGACCTCGGCTTGTGTTGTAG CTAATCTGGCGCTGTGGACAGCAGTTTCATTTGTTATATTTTGATAGCGG TCCCGCTCCTCCCCCCCCCCCCCCCGCCGCCCTTGCGTTGGGTTTGCTGA CACCGCCAGATTCGCGATGTTTCTGTTTTTATTGCTTCAGCTGTCTGAGT CAGTGCTGGCCTGTGATTTGACCGTGTTCGACTTGCACTGGCCACTCCCT AGGGCATCCCGTTTATCTTGGTGGGGACGAAACTGGACCTGAGGGACGAC CAGGACGCCTGCAAGAGACTGGCAGAGCGGCGGCAGACGCCCATTAGCTT CAGCGAGGCGCAGGCGCTAGCGTCGGAACTCGACGCGTACCGCTACCTGG AGTGTAGCGCGCTCACACAGCATGGGTTGAAACAGGTGGGTCGTCTGTGG GGACCCTATGGTTGACACCATCAGTGTTTTTTTTTTCAGTACGTTGAAGC GCGTTCGCGTTCTTCAATCAGGCGTGGTGCATCGTTTGGGGTGCCATGCT GTGTACTTGGCTCTGCTTGTAGAGAGACGCCTTTCCCCCCAAAACATGCT GTTTCTTGCAGGTTGTTAATACGGAACCTTTTTCCTTCTCTGTGTCCGTG TGCGTGCCTGTGTCGGCATTTGCCCGAATCACAATCGCCACGGACGAACG AACCGGTCTTTTGACTGTTCGTCGTGGCGCGAACGGCGACGCCAGGTGTT CGACGGCGCTATCCGGTGTGTGCTAGAGCGAAACCAAAGGAAGATGAAGA AAAAGAAGGGCAAGAAGAACTGCGTCATCTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8920:3210..4244-

>mRNA_Ecto-sp9_F_contig8920.17110.1 ID=mRNA_Ecto-sp9_F_contig8920.17110.1|Name=mRNA_Ecto-sp9_F_contig8920.17110.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8920:3210..4244- (Ectocarpus species9 EcSCA_722f female)
GAAAAGGATGTCTTCCTCGTCTGTTTCAGCGTGGTGGACCCCACCAGCTT
CCATAACGTGAAGCTTAAGTGGATACCCGAGCTACAGAGTCATGCTCCGG
AAAAGGATGTCTTCCTCGTCTGTTTCAGCGTGGTGGACCCCACCAGCTTC
CATAACGTGAAGCTTAAGTGGATACCCGAGCTACAGAGTCATGCTCCGGG
CATCCCGTTTATCTTGGTGGGGACGAAACTGGACCTGAGGGACGACCAGG
ACGCCTGCAAGAGACTGGCAGAGCGGCGGCAGACGCCCATTAGCTTCAGC
GAGGCGCAGGCGCTAGCGTCGGAACTCGACGCGTACCGCTACCTGGAGTG
TAGCGCGCTCACACAGCATGGGTTGAAACAGGGCATCCCGTTTATCTTGG
TGGGGACGAAACTGGACCTGAGGGACGACCAGGACGCCTGCAAGAGACTG
GCAGAGCGGCGGCAGACGCCCATTAGCTTCAGCGAGGCGCAGGCGCTAGC
GTCGGAACTCGACGCGTACCGCTACCTGGAGTGTAGCGCGCTCACACAGC
ATGGGTTGAAACAGGTGTTCGACGGCGCTATCCGGTGTGTGCTAGAGCGA
AACCAAAGGAAGATGAAGAAAAAGAAGGGCAAGAAGAACTGCGTCATCTC
GTGAGTGTTCGACGGCGCTATCCGGTGTGTGCTAGAGCGAAACCAAAGGA
AGATGAAGAAAAAGAAGGGCAAGAAGAACTGCGTCATCTCGTGA
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