mRNA_Ecto-sp9_F_contig890.17085.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amine (oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF22_ECTSI) HSP 1 Score: 228 bits (580), Expect = 1.440e-70 Identity = 112/117 (95.73%), Postives = 113/117 (96.58%), Query Frame = 1
Query: 1 CEPHRETSVSGRQGEGTLAELPGSAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASDVLQAVQRAQKERASGTSAQIP 351
CEP RETSVSG QGEGTLAELP SAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAAS VLQAVQRAQKERASGT+AQIP
Sbjct: 346 CEPRRETSVSGGQGEGTLAELPSSAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASGVLQAVQRAQKERASGTAAQIP 462
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: PAO (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR3_9PHAE) HSP 1 Score: 186 bits (473), Expect = 5.860e-54 Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1
Query: 1 CEPHRETSVSGRQGEGTLAELPGSAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDR 276
CEPHRETS SG QGEGTLAELP SAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAAS+NGTLFFAGEHTNTPTG TVHAAIDSGDR
Sbjct: 447 CEPHRETSGSGGQGEGTLAELPSSAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASINGTLFFAGEHTNTPTGMTVHAAIDSGDR 538
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW8_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 7.520e-15 Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 46 GTLAELPGSA---YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASDVLQAVQRAQKERASGTSAQ 345
G +++ P A ++G + DW + PF+RGGY YP+ G +AA LFFAGEHTN G T+HAA D+G RAA +V+QA+ A A+GTS +
Sbjct: 372 GPISDHPNPASDCFLGAKIVDWKTEYPFIRGGYSYPKQGHKAGAGGEIAAPEGDHLFFAGEHTNAAAGMTLHAAYDTGTRAALEVVQAIGAA----ATGTSLE 470
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUS0_BRELC) HSP 1 Score: 76.3 bits (186), Expect = 1.700e-13 Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 46 GTLAE-LPGSAY-VGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQ 306
GTL E P Y V G DW DEP++RGGY YPR+G +T LAA VN LFFAGE T G +VHAA+D+G RAA +V +A+Q
Sbjct: 394 GTLDEPSPAHKYFVKGTYKDW-GDEPWIRGGYAYPRVGQSDTASKDLAAPVNNRLFFAGEATAYEQPGMSVHAAVDTGTRAAMEVARALQ 482
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2NUE5_PHYPR) HSP 1 Score: 73.2 bits (178), Expect = 2.040e-12 Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 76 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQ 306
+V G DW DEP++RGGY YPR+G +T LAA V+G +FFAGE T G +VH+A+D+G RA+ V++A+Q
Sbjct: 402 FVKGTYKDW-GDEPWIRGGYAYPRVGQSDTASYDLAAPVDGRIFFAGEATAFEQPGMSVHSAVDTGTRASEQVVRALQ 478
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MQX8_PHYIT) HSP 1 Score: 72.0 bits (175), Expect = 4.070e-12 Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query: 76 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQ 306
YV G DW DEP++RGGY +PR+G +T LAA V G +FFAGE T G +VHAA+D+G RA+ V +A+Q
Sbjct: 281 YVKGTYKDW-GDEPWIRGGYAFPRVGQSDTASYDLAAPVAGRIFFAGEATAFEQPGMSVHAAVDTGARASEQVTRALQ 357
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amine (oxidase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AT21_PLAHL) HSP 1 Score: 70.1 bits (170), Expect = 2.290e-11 Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1
Query: 76 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQR 309
+V G+ DW DEP++ GGY YPR+G ++ + LAA V+ LFFAGE T G +VHAA+D+G RAA+ V A+ +
Sbjct: 340 FVKGIYKDW-GDEPWICGGYAYPRVGQSDSASSELAAPVDNRLFFAGEATAFEQPGMSVHAAVDTGTRAAAQVTHALMK 417
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y2H3_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 3.320e-11 Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 76 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQ 306
+V G+ DW D +VRGGY +PR+G ++ LAASV+G +FFAGE T G +VHAA+D+G RAA+ V +A+Q
Sbjct: 401 FVKGMYKDW-GDVEYVRGGYAFPRVGQTDSAARDLAASVDGRVFFAGEATAFEQPGMSVHAAVDTGTRAAAQVARALQ 477
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X0T7_9CHLO) HSP 1 Score: 67.4 bits (163), Expect = 2.080e-10 Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 85 GLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASDVLQAVQ 306
G+V+DW K++ FV+GGY YP +G LAA V GT+FFAGE T+T V A+D+G RAA+ VL ++Q
Sbjct: 364 GVVYDWSKND-FVKGGYSYPSLGALRGDRESLAAPVAGTVFFAGEATSTALNPCVQGAMDTGRRAATQVLASLQ 436
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZPG5_PHYSP) HSP 1 Score: 67.0 bits (162), Expect = 2.500e-10 Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 76 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQ 306
+V G+ DW DEP++ GGY +PR+G +T LAA V+ +FFAGE T G +VHAAID+G RA+ +A+Q
Sbjct: 286 FVRGMYKDW-GDEPWIGGGYAFPRVGQSDTASQDLAAPVDNRIFFAGEATAFEQPGMSVHAAIDTGSRASVQAARALQ 362 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig890.17085.1 >prot_Ecto-sp9_F_contig890.17085.1 ID=prot_Ecto-sp9_F_contig890.17085.1|Name=mRNA_Ecto-sp9_F_contig890.17085.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp CEPHRETSVSGRQGEGTLAELPGSAYVGGLVHDWVKDEPFVRGGYCYPRIback to top mRNA from alignment at Ecto-sp9_F_contig890:28054..28911- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig890.17085.1 ID=mRNA_Ecto-sp9_F_contig890.17085.1|Name=mRNA_Ecto-sp9_F_contig890.17085.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=858bp|location=Sequence derived from alignment at Ecto-sp9_F_contig890:28054..28911- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig890:28054..28911- >mRNA_Ecto-sp9_F_contig890.17085.1 ID=mRNA_Ecto-sp9_F_contig890.17085.1|Name=mRNA_Ecto-sp9_F_contig890.17085.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig890:28054..28911- (Ectocarpus species9 EcSCA_722f female)back to top |