mRNA_Ecto-sp9_F_contig890.17085.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig890.17085.1
Unique NamemRNA_Ecto-sp9_F_contig890.17085.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amine (oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF22_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.440e-70
Identity = 112/117 (95.73%), Postives = 113/117 (96.58%), Query Frame = 1
Query:    1 CEPHRETSVSGRQGEGTLAELPGSAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASDVLQAVQRAQKERASGTSAQIP 351
            CEP RETSVSG QGEGTLAELP SAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAAS VLQAVQRAQKERASGT+AQIP
Sbjct:  346 CEPRRETSVSGGQGEGTLAELPSSAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASGVLQAVQRAQKERASGTAAQIP 462          
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: PAO (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR3_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 5.860e-54
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1
Query:    1 CEPHRETSVSGRQGEGTLAELPGSAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDR 276
            CEPHRETS SG QGEGTLAELP SAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAAS+NGTLFFAGEHTNTPTG TVHAAIDSGDR
Sbjct:  447 CEPHRETSGSGGQGEGTLAELPSSAYVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASINGTLFFAGEHTNTPTGMTVHAAIDSGDR 538          
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 7.520e-15
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   46 GTLAELPGSA---YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASDVLQAVQRAQKERASGTSAQ 345
            G +++ P  A   ++G  + DW  + PF+RGGY YP+ G        +AA     LFFAGEHTN   G T+HAA D+G RAA +V+QA+  A    A+GTS +
Sbjct:  372 GPISDHPNPASDCFLGAKIVDWKTEYPFIRGGYSYPKQGHKAGAGGEIAAPEGDHLFFAGEHTNAAAGMTLHAAYDTGTRAALEVVQAIGAA----ATGTSLE 470          
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUS0_BRELC)

HSP 1 Score: 76.3 bits (186), Expect = 1.700e-13
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   46 GTLAE-LPGSAY-VGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQ 306
            GTL E  P   Y V G   DW  DEP++RGGY YPR+G  +T    LAA VN  LFFAGE T     G +VHAA+D+G RAA +V +A+Q
Sbjct:  394 GTLDEPSPAHKYFVKGTYKDW-GDEPWIRGGYAYPRVGQSDTASKDLAAPVNNRLFFAGEATAYEQPGMSVHAAVDTGTRAAMEVARALQ 482          
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2NUE5_PHYPR)

HSP 1 Score: 73.2 bits (178), Expect = 2.040e-12
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   76 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQ 306
            +V G   DW  DEP++RGGY YPR+G  +T    LAA V+G +FFAGE T     G +VH+A+D+G RA+  V++A+Q
Sbjct:  402 FVKGTYKDW-GDEPWIRGGYAYPRVGQSDTASYDLAAPVDGRIFFAGEATAFEQPGMSVHSAVDTGTRASEQVVRALQ 478          
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MQX8_PHYIT)

HSP 1 Score: 72.0 bits (175), Expect = 4.070e-12
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   76 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQ 306
            YV G   DW  DEP++RGGY +PR+G  +T    LAA V G +FFAGE T     G +VHAA+D+G RA+  V +A+Q
Sbjct:  281 YVKGTYKDW-GDEPWIRGGYAFPRVGQSDTASYDLAAPVAGRIFFAGEATAFEQPGMSVHAAVDTGARASEQVTRALQ 357          
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amine (oxidase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AT21_PLAHL)

HSP 1 Score: 70.1 bits (170), Expect = 2.290e-11
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   76 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQR 309
            +V G+  DW  DEP++ GGY YPR+G  ++  + LAA V+  LFFAGE T     G +VHAA+D+G RAA+ V  A+ +
Sbjct:  340 FVKGIYKDW-GDEPWICGGYAYPRVGQSDSASSELAAPVDNRLFFAGEATAFEQPGMSVHAAVDTGTRAAAQVTHALMK 417          
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y2H3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.320e-11
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   76 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQ 306
            +V G+  DW  D  +VRGGY +PR+G  ++    LAASV+G +FFAGE T     G +VHAA+D+G RAA+ V +A+Q
Sbjct:  401 FVKGMYKDW-GDVEYVRGGYAFPRVGQTDSAARDLAASVDGRVFFAGEATAFEQPGMSVHAAVDTGTRAAAQVARALQ 477          
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X0T7_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 2.080e-10
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   85 GLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASDVLQAVQ 306
            G+V+DW K++ FV+GGY YP +G        LAA V GT+FFAGE T+T     V  A+D+G RAA+ VL ++Q
Sbjct:  364 GVVYDWSKND-FVKGGYSYPSLGALRGDRESLAAPVAGTVFFAGEATSTALNPCVQGAMDTGRRAATQVLASLQ 436          
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Match: Amino_oxidase (domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZPG5_PHYSP)

HSP 1 Score: 67.0 bits (162), Expect = 2.500e-10
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   76 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDRAASDVLQAVQ 306
            +V G+  DW  DEP++ GGY +PR+G  +T    LAA V+  +FFAGE T     G +VHAAID+G RA+    +A+Q
Sbjct:  286 FVRGMYKDW-GDEPWIGGGYAFPRVGQSDTASQDLAAPVDNRIFFAGEATAFEQPGMSVHAAIDTGSRASVQAARALQ 362          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig890.17085.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Amine1.440e-7095.73oxidase-like protein n=1 Tax=Ectocarpus siliculosu... [more]
PAO5.860e-5494.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Amino_oxidase7.520e-1542.72domain-containing protein (Fragment) n=1 Tax=Tribo... [more]
Amino_oxidase1.700e-1352.22domain-containing protein n=1 Tax=Bremia lactucae ... [more]
Amino_oxidase2.040e-1248.72domain-containing protein n=10 Tax=Phytophthora Ta... [more]
Amino_oxidase4.070e-1250.00domain-containing protein n=2 Tax=Phytophthora inf... [more]
Amine2.290e-1146.84oxidase-like protein n=1 Tax=Plasmopara halstedii ... [more]
Amino_oxidase3.320e-1148.72domain-containing protein n=2 Tax=Nothophytophthor... [more]
Amino_oxidase2.080e-1048.65domain-containing protein n=1 Tax=Chlamydomonas eu... [more]
Amino_oxidase2.500e-1046.15domain-containing protein n=1 Tax=Phytophthora soj... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig890contigEcto-sp9_F_contig890:28054..28911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.2
Seed ortholog evalue1e-57
Seed eggNOG ortholog2880.D8LF22
KEGG koko:K19413
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size421
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig890.17085.1prot_Ecto-sp9_F_contig890.17085.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig890 28119..28911 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.386591-UTR-Ecto-sp9_F_contig890:28053..281181622930946.386591-UTR-Ecto-sp9_F_contig890:28053..28118Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig890 28054..28118 -
1692278961.6813297-UTR-Ecto-sp9_F_contig890:28053..281181692278961.6813297-UTR-Ecto-sp9_F_contig890:28053..28118Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig890 28054..28118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.4297245-CDS-Ecto-sp9_F_contig890:28118..281971622930946.4297245-CDS-Ecto-sp9_F_contig890:28118..28197Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig890 28119..28197 -
1692278961.6913192-CDS-Ecto-sp9_F_contig890:28118..281971692278961.6913192-CDS-Ecto-sp9_F_contig890:28118..28197Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig890 28119..28197 -
1622930946.4535336-CDS-Ecto-sp9_F_contig890:28636..289111622930946.4535336-CDS-Ecto-sp9_F_contig890:28636..28911Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig890 28637..28911 -
1692278961.7030027-CDS-Ecto-sp9_F_contig890:28636..289111692278961.7030027-CDS-Ecto-sp9_F_contig890:28636..28911Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig890 28637..28911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig890.17085.1

>prot_Ecto-sp9_F_contig890.17085.1 ID=prot_Ecto-sp9_F_contig890.17085.1|Name=mRNA_Ecto-sp9_F_contig890.17085.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp
CEPHRETSVSGRQGEGTLAELPGSAYVGGLVHDWVKDEPFVRGGYCYPRI
GFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASDVLQA
VQRAQKERASGTSAQIP*
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mRNA from alignment at Ecto-sp9_F_contig890:28054..28911-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig890.17085.1 ID=mRNA_Ecto-sp9_F_contig890.17085.1|Name=mRNA_Ecto-sp9_F_contig890.17085.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=858bp|location=Sequence derived from alignment at Ecto-sp9_F_contig890:28054..28911- (Ectocarpus species9 EcSCA_722f female)
TGCGAACCGCACCGTGAGACCAGCGTTAGCGGGAGACAAGGCGAGGGCAC ACTAGCGGAGCTTCCGGGCTCAGCGTATGTCGGAGGCCTGGTTCACGATT GGGTGAAAGACGAGCCGTTTGTGCGGGGTGGTTATTGCTACCCGCGAATC GGGTTCGACGAGACTACTCATGCTCACCTGGCCGCTAGCGTCAACGGAAC GTTGTTCTTTGCTGGAGAACACACCAACACACCAACCGGGACGACGGTCC ATGCTGCGATCGACTCGGGAGATAGGTAAGATGTGTTTGCCGTCAGTCAC CTCGTTTCCCCAAAGTTGCAACCATTTGAAACATATCAATCATTGGTCAG GCTGCTTAACTACGCACGCTCTGGTTGACATAGTGAAATATCATTCGGCC GAGTGGGTCGAAACCGACACAACACCACGGTTCGCAGTTTGCTAGCTGGG AGGCACCGTCGTGTACCGCACAAGAGTTGAAAACAACAACACGGTGAGAT CGCGATCGTTCCTTTTCTGTGCTCGGGGGGGGGGGGGGGGGGGCCGTTGT GCCGAACTGCACAGGGCTGCTTCAGGCGGGCCCCACGCGGCCCAACGNNN NNNNNNNCGGTTCGCCCCCCCACACAACAACCGACCGGCGGCGGCGGGGC TTGTTTTGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTCCGTTGT GCCGAACTGCACAGGGCTGCTTCAGACGTGCTCCAAGCAGTCCAACGTGC GCAGAAAGAACGAGCAAGCGGAACTTCGGCACAAATACCCTAGACGAGAA GAGTTTCGCCGAGGCTCAACGTGCCGCCGCCTTGCTTGAGTGCGGGACAT CAAGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig890:28054..28911-

>mRNA_Ecto-sp9_F_contig890.17085.1 ID=mRNA_Ecto-sp9_F_contig890.17085.1|Name=mRNA_Ecto-sp9_F_contig890.17085.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig890:28054..28911- (Ectocarpus species9 EcSCA_722f female)
TGCGAACCGCACCGTGAGACCAGCGTTAGCGGGAGACAAGGCGAGGGCAC
ACTAGCGGAGCTTCCGGGCTCAGCGTATGTCGGAGGCCTGGTTCACGATT
GGGTGAAAGACGAGCCGTTTGTGCGGGGTGGTTATTGCTACCCGCGAATC
GGGTTCGACGAGACTACTCATGCTCACCTGGCCGCTAGCGTCAACGGAAC
GTTGTTCTTTGCTGGAGAACACACCAACACACCAACCGGGACGACGGTCC
ATGCTGCGATCGACTCGGGAGATAGTGCGAACCGCACCGTGAGACCAGCG
TTAGCGGGAGACAAGGCGAGGGCACACTAGCGGAGCTTCCGGGCTCAGCG
TATGTCGGAGGCCTGGTTCACGATTGGGTGAAAGACGAGCCGTTTGTGCG
GGGTGGTTATTGCTACCCGCGAATCGGGTTCGACGAGACTACTCATGCTC
ACCTGGCCGCTAGCGTCAACGGAACGTTGTTCTTTGCTGGAGAACACACC
AACACACCAACCGGGACGACGGTCCATGCTGCGATCGACTCGGGAGATAG
GGCTGCTTCAGACGTGCTCCAAGCAGTCCAACGTGCGCAGAAAGAACGAG
CAAGCGGAACTTCGGCACAAATACCCTAGGGCTGCTTCAGACGTGCTCCA
AGCAGTCCAACGTGCGCAGAAAGAACGAGCAAGCGGAACTTCGGCACAAA
TACCCTAG
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