mRNA_Ecto-sp9_F_contig8823.17005.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8823.17005.1 vs.
Match: Predicted (E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI4_ECTSI) HSP 1 Score: 441 bits (1134), Expect = 1.980e-145 Identity = 360/465 (77.42%), Postives = 369/465 (79.35%), Query Frame = 1
Query: 1 LKWWNVRGCPNQQLQENSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFKAISRKCSSRTTSLDLTASRTPSNSRDARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGVSALAILTEVLGPQLLRGWQGDQRDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEESQEGRRYRRAPHPSVLSPRSWMPPXXFHXXXXXXXXXXXXXXXXXXXXXXEVXXXXXXXXXXXXXXXXXXXXXXXAYSTPQVDAVXXXXXXXXXXXXXXXXXXXXXXXDGEGRTDEEGGVIFRDDDASRCSAGEVTVGKANAVAPPVDEEALPEAATEAGRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATVAADVLES 1395
+WWNVRGCPNQQLQE+SHQSPRGRQCHKLLSAVQIVVVGPLALLLT ASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFK +SRKCSSRTTSLDLTA RT SNS DARSG XXXXXXXXXXXXXX XXXXX XXXXXXXXXXXX AAGVSALAILTEVLGPQLLRGWQGDQRDE XXXXXXXXXXXXXXXXXX GDEES +GRRYRRAPHPSVLSP SWMP XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX A+S P+V+ V XXXXXXX DGEGRTDEEGGVIFRD DASR SAGEVTVG+A+AVAPPVDEE LPEAA EAGRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATV A VLES
Sbjct: 258 FQWWNVRGCPNQQLQEDSHQSPRGRQCHKLLSAVQIVVVGPLALLLTAASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFKVVSRKCSSRTTSLDLTAPRTSSNSHDARSGSXXXXXXXXXXXXXXTGREGEAXXXXXDPSAIESGTIGAAXXXXXXXXXXXXGEIGA-----AAGVSALAILTEVLGPQLLRGWQGDQRDEEERGNGGHDEGWXXXXXXXXXXXXXXXXXX-GDEESHQGRRYRRAPHPSVLSPHSWMP------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEILEAGRRRPGAFSIPEVEVVSSLSSSALGXXXXXXXVTSTAAPDGEGRTDEEGGVIFRDGDASRWSAGEVTVGEASAVAPPVDEEPLPEAAAEAGRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATVGAYVLES 710
BLAST of mRNA_Ecto-sp9_F_contig8823.17005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD10_9PHAE) HSP 1 Score: 432 bits (1111), Expect = 4.370e-140 Identity = 307/472 (65.04%), Postives = 318/472 (67.37%), Query Frame = 1
Query: 1 LKWWNVRGCPNQQLQENSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFKAISRKCSSRTTSLDLTASRTPSNSRDARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-AGVSALAILTEVLGPQLLRGWQGDQRDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEESQEGRRYRRAPHPSVLSPRSWMPPXXFHXXXXXXXXXXXXXXXXXXXXXX-----EVXXXXXXXXXXXXXXXXXXXXXXXAYSTPQVDAVXXXXXXXXXXXXXXXXXXXXXXX--DGEGRTDEEGGVIFRDDDASRCSAGEVTVGKANAVAPPVDEEALPEAATEAGRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATVAADVLE 1392
+WWNVRGCPNQQLQE+SHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRL PRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLF+AISRKCSSRTTSLDLTASR P+NSRDARSG XXXXXXXXXXXX XXXXX A AG SALAILTEVLGPQL RG QGD+RDE XXXXXXXX GDEES+EGRRYRRAPHPS LSP SWMPP FH XXXXXXXXXX EV A TP+V+ V DGEGRTDEEGGV FRD DASR SAGEVTV KA+ VAPPV EEALP+AA E+GRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATVAADVLE
Sbjct: 398 FQWWNVRGCPNQQLQEDSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLSPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFRAISRKCSSRTTSLDLTASRRPNNSRDARSGSRKRXXXXXXXXXXXXAGRGDTGQEGEAXXXXXDPNAIESGTIGAAAEAVTETTGSSSAESGATAGASALAILTEVLGPQLFRGGQGDRRDEEEPGNGGHDVGXXXXXXXXRMQANY------GDEESEEGRRYRRAPHPSALSPHSWMPPPPFHQYSSGSGVGGDVXXXXXXXXXXXGKGDEVLAAPSSSASSSPEILEAGQRRPGAPYTPEVEMVASPSSSWSALGGSSTTAAVTSTAAPDGEGRTDEEGGVNFRDGDASRRSAGEVTVAKASTVAPPVGEEALPKAAAESGRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATVAADVLE 863
BLAST of mRNA_Ecto-sp9_F_contig8823.17005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT7_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 4.470e-13 Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 1 LKWWNVRGCPNQQLQENSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLP-VVLVGAVLAAVLYLVM 309
+WWNV GCPNQQ+QE++ R R C ++LS +Q+V++GP LP F P ++F+GC+SGWG VM L LLP V+ +G + +L L M
Sbjct: 312 FEWWNVTGCPNQQMQEDAQPGRRSRVCLRVLSLIQVVIIGPXXXXXXXXXXXXXXXXLPLFGQGPVEVFSGCMSGWGYVVMALLLLPFVIAIGVPILLILGLCM 415
BLAST of mRNA_Ecto-sp9_F_contig8823.17005.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B5E8_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 3.420e-6 Identity = 37/99 (37.37%), Postives = 52/99 (52.53%), Query Frame = 1
Query: 1 LKWWNVRGCPNQQLQENSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVL 297
+WWN+RGCPN QL E+ S K +S +QIVVVG + +L V + L C + + S WGN + V+ LLPV L+ VL+ +L
Sbjct: 505 FQWWNIRGCPNMQLNESIEPSKTELFLSKAMSVMQIVVVGVPSAILAVGTFLPLYCVFHSIGSSFQDRALNFFSLWGNILTVVLLLPVALLALVLSPLL 603 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8823.17005.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8823.17005.1 >prot_Ecto-sp9_F_contig8823.17005.1 ID=prot_Ecto-sp9_F_contig8823.17005.1|Name=mRNA_Ecto-sp9_F_contig8823.17005.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=466bp LKWWNVRGCPNQQLQENSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASback to top mRNA from alignment at Ecto-sp9_F_contig8823:3612..5678- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8823.17005.1 ID=mRNA_Ecto-sp9_F_contig8823.17005.1|Name=mRNA_Ecto-sp9_F_contig8823.17005.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2067bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8823:3612..5678- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8823:3612..5678- >mRNA_Ecto-sp9_F_contig8823.17005.1 ID=mRNA_Ecto-sp9_F_contig8823.17005.1|Name=mRNA_Ecto-sp9_F_contig8823.17005.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2796bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8823:3612..5678- (Ectocarpus species9 EcSCA_722f female)back to top |