prot_Ecto-sp9_F_contig8823.17005.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8823.17005.1
Unique Nameprot_Ecto-sp9_F_contig8823.17005.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length466
Homology
BLAST of mRNA_Ecto-sp9_F_contig8823.17005.1 vs.
Match: Predicted (E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI4_ECTSI)

HSP 1 Score: 441 bits (1134), Expect = 1.980e-145
Identity = 360/465 (77.42%), Postives = 369/465 (79.35%), Query Frame = 0
Query:    1 LKWWNVRGCPNQQLQENSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFKAISRKCSSRTTSLDLTASRTPSNSRDARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGVSALAILTEVLGPQLLRGWQGDQRDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEESQEGRRYRRAPHPSVLSPRSWMPPXXFHXXXXXXXXXXXXXXXXXXXXXXEVXXXXXXXXXXXXXXXXXXXXXXXAYSTPQVDAVXXXXXXXXXXXXXXXXXXXXXXXDGEGRTDEEGGVIFRDDDASRCSAGEVTVGKANAVAPPVDEEALPEAATEAGRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATVAADVLES 465
             +WWNVRGCPNQQLQE+SHQSPRGRQCHKLLSAVQIVVVGPLALLLT ASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFK +SRKCSSRTTSLDLTA RT SNS DARSG XXXXXXXXXXXXXX       XXXXX             XXXXXXXXXXXX          AAGVSALAILTEVLGPQLLRGWQGDQRDE            XXXXXXXXXXXXXXXXXX GDEES +GRRYRRAPHPSVLSP SWMP      XXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXX            A+S P+V+ V         XXXXXXX       DGEGRTDEEGGVIFRD DASR SAGEVTVG+A+AVAPPVDEE LPEAA EAGRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATV A VLES
Sbjct:  258 FQWWNVRGCPNQQLQEDSHQSPRGRQCHKLLSAVQIVVVGPLALLLTAASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFKVVSRKCSSRTTSLDLTAPRTSSNSHDARSGSXXXXXXXXXXXXXXTGREGEAXXXXXDPSAIESGTIGAAXXXXXXXXXXXXGEIGA-----AAGVSALAILTEVLGPQLLRGWQGDQRDEEERGNGGHDEGWXXXXXXXXXXXXXXXXXX-GDEESHQGRRYRRAPHPSVLSPHSWMP------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEILEAGRRRPGAFSIPEVEVVSSLSSSALGXXXXXXXVTSTAAPDGEGRTDEEGGVIFRDGDASRWSAGEVTVGEASAVAPPVDEEPLPEAAAEAGRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATVGAYVLES 710          
BLAST of mRNA_Ecto-sp9_F_contig8823.17005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD10_9PHAE)

HSP 1 Score: 432 bits (1111), Expect = 4.370e-140
Identity = 307/472 (65.04%), Postives = 318/472 (67.37%), Query Frame = 0
Query:    1 LKWWNVRGCPNQQLQENSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFKAISRKCSSRTTSLDLTASRTPSNSRDARSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-AGVSALAILTEVLGPQLLRGWQGDQRDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEESQEGRRYRRAPHPSVLSPRSWMPPXXFHXXXXXXXXXXXXXXXXXXXXXX-----EVXXXXXXXXXXXXXXXXXXXXXXXAYSTPQVDAVXXXXXXXXXXXXXXXXXXXXXXX--DGEGRTDEEGGVIFRDDDASRCSAGEVTVGKANAVAPPVDEEALPEAATEAGRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATVAADVLE 464
             +WWNVRGCPNQQLQE+SHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRL PRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLF+AISRKCSSRTTSLDLTASR P+NSRDARSG    XXXXXXXXXXXX            XXXXX                             A AG SALAILTEVLGPQL RG QGD+RDE           XXXXXXXX            GDEES+EGRRYRRAPHPS LSP SWMPP  FH            XXXXXXXXXX     EV                       A  TP+V+ V                         DGEGRTDEEGGV FRD DASR SAGEVTV KA+ VAPPV EEALP+AA E+GRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATVAADVLE
Sbjct:  398 FQWWNVRGCPNQQLQEDSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLSPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLYLVMLPARLFRAISRKCSSRTTSLDLTASRRPNNSRDARSGSRKRXXXXXXXXXXXXAGRGDTGQEGEAXXXXXDPNAIESGTIGAAAEAVTETTGSSSAESGATAGASALAILTEVLGPQLFRGGQGDRRDEEEPGNGGHDVGXXXXXXXXRMQANY------GDEESEEGRRYRRAPHPSALSPHSWMPPPPFHQYSSGSGVGGDVXXXXXXXXXXXGKGDEVLAAPSSSASSSPEILEAGQRRPGAPYTPEVEMVASPSSSWSALGGSSTTAAVTSTAAPDGEGRTDEEGGVNFRDGDASRRSAGEVTVAKASTVAPPVGEEALPKAAAESGRDDGSVGVDGAVLGSRVVAVGDEGAPPVGATVAADVLE 863          
BLAST of mRNA_Ecto-sp9_F_contig8823.17005.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.470e-13
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 0
Query:    1 LKWWNVRGCPNQQLQENSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLP-VVLVGAVLAAVLYLVM 103
             +WWNV GCPNQQ+QE++    R R C ++LS +Q+V++GP                LP F   P ++F+GC+SGWG  VM L LLP V+ +G  +  +L L M
Sbjct:  312 FEWWNVTGCPNQQMQEDAQPGRRSRVCLRVLSLIQVVIIGPXXXXXXXXXXXXXXXXLPLFGQGPVEVFSGCMSGWGYVVMALLLLPFVIAIGVPILLILGLCM 415          
BLAST of mRNA_Ecto-sp9_F_contig8823.17005.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B5E8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.420e-6
Identity = 37/99 (37.37%), Postives = 52/99 (52.53%), Query Frame = 0
Query:    1 LKWWNVRGCPNQQLQENSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVASSLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVL 99
             +WWN+RGCPN QL E+   S       K +S +QIVVVG  + +L V + L   C   +     +       S WGN + V+ LLPV L+  VL+ +L
Sbjct:  505 FQWWNIRGCPNMQLNESIEPSKTELFLSKAMSVMQIVVVGVPSAILAVGTFLPLYCVFHSIGSSFQDRALNFFSLWGNILTVVLLLPVALLALVLSPLL 603          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8823.17005.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Predicted1.980e-14577.42E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus... [more]
Uncharacterized4.370e-14065.04protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.470e-1341.35protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical3.420e-637.37protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 62..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..61
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..104
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 105..465
NoneNo IPR availableTMHMMTMhelixcoord: 79..101
NoneNo IPR availableTMHMMTMhelixcoord: 36..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8823contigEcto-sp9_F_contig8823:3612..5678 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8823.17005.1mRNA_Ecto-sp9_F_contig8823.17005.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8823 3612..5678 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8823.17005.1 ID=prot_Ecto-sp9_F_contig8823.17005.1|Name=mRNA_Ecto-sp9_F_contig8823.17005.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=466bp
LKWWNVRGCPNQQLQENSHQSPRGRQCHKLLSAVQIVVVGPLALLLTVAS
SLACVCCLPAFRLPPRQLFTGCISGWGNFVMVLPLLPVVLVGAVLAAVLY
LVMLPARLFKAISRKCSSRTTSLDLTASRTPSNSRDARSGSSSKSSVGGG
GGGGGAGRGDTGQEGEAGSGGGDPGAIESGTIGSVAEAVAETTSSSSGES
GAAAGVSALAILTEVLGPQLLRGWQGDQRDEEEQGNGGHDEGWRRRRRGG
GQEEEERMQANDGDEESQEGRRYRRAPHPSVLSPRSWMPPPPFHQYSSGS
GSGTGGGGGGGGGKGDEVLAAPSSSSSSPQEILEAGRRRRGAYSTPQVDA
VSSPSSSALGGSSTTAAVTSAAAPDGEGRTDEEGGVIFRDDDASRCSAGE
VTVGKANAVAPPVDEEALPEAATEAGRDDGSVGVDGAVLGSRVVAVGDEG
APPVGATVAADVLES*
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