mRNA_Ecto-sp9_F_contig11473.1259.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11473.1259.1
Unique NamemRNA_Ecto-sp9_F_contig11473.1259.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: Hydroxymethylglutaryl-CoA (reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK73_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 2.980e-70
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 1
Query:    1 EGGTVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 345
            EGGTVLSKLPFEDM YSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR
Sbjct:  163 EGGTVLSKLPFEDMAYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 277          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: Hydroxymethylglutaryl-CoA (reductase (NADPH) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV27_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 8.560e-34
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1
Query:  142 VWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 345
            VWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSS SGG RTEVLDDGVTRAPCIAMPNIRLASELRR
Sbjct:    3 VWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSASGGVRTEVLDDGVTRAPCIAMPNIRLASELRR 70          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.900e-32
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   13 VLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 342
            V  KLP +  DY RI+G NCE V+GYVP+P G  GPL++DGE V++P+ATTEG LVAS NRGC AI           +  GGAR  VL DG+TRAPCI MP+   A++L+
Sbjct:   74 VFEKLPVDHFDYERIFGANCEIVVGYVPLPCGVVGPLLLDGEPVYVPMATTEGCLVASTNRGCKAI-----------TACGGARARVLKDGITRAPCILMPSAMAAADLK 172          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9X0Y6_9ACAR)

HSP 1 Score: 122 bits (307), Expect = 3.780e-30
Identity = 59/113 (52.21%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 EGGTVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASEL 339
            E G  L KLP+   DYS + G  CENV+GYVPVPVG AGPL++DG K ++P+ATTEG LVAS NRGC AI +           +GGA +E++DDG+TR P I +P++  AS +
Sbjct:  373 EAGQALQKLPYLHYDYSLVMGACCENVIGYVPVPVGVAGPLLLDGRKFYVPMATTEGCLVASTNRGCSAILK-----------AGGAHSEIIDDGMTRGPVIKLPSVMEASRI 474          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=9 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0SZT8_ICTPU)

HSP 1 Score: 122 bits (306), Expect = 5.250e-30
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   10 TVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 342
            + L  LP+ D DYS++ G NCENV+GYVPVPVG AGPL++DG++ ++P+ATTEG LVAS NRGC AI           + SGGA   VL DG+TR P + +P++  A+E++
Sbjct:  477 SALENLPYTDYDYSKVMGTNCENVIGYVPVPVGVAGPLLLDGKEFYVPIATTEGCLVASTNRGCRAI-----------TLSGGASARVLADGMTRGPVVQLPSVCKAAEVK 576          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0R4_THAPS)

HSP 1 Score: 119 bits (298), Expect = 5.550e-30
Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   13 VLSKLPFE-DMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASEL 339
            VLS+LP E D+DY R+ G NCE V+GY+P+PVG  GP+ ++GE V+IP+ATTEG LVAS NRGC AI++G            GAR+ +L DG+TRAPC+ +P+   A+++
Sbjct:    2 VLSELPHEHDLDYKRVLGANCEIVVGYIPIPVGIVGPVTLNGESVYIPMATTEGCLVASTNRGCKAITQG-----------SGARSTILRDGITRAPCVRLPSAHEAAQV 100          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.150e-29
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   13 VLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 345
             L  LP    DY+R++G NCE V GYVP+PVG  GPL++DG +V++P+ATTEG LVAS NRGC AIS+G           GGAR+ VL DG+TRAPC+ MP+   A+ +++
Sbjct:  198 ALRALPHAGYDYARVFGANCEIVCGYVPLPVGIVGPLLLDGREVYVPMATTEGCLVASTNRGCKAISQG-----------GGARSVVLKDGITRAPCLRMPDTIGAARVKQ 297          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PCQ9_9TELE)

HSP 1 Score: 120 bits (301), Expect = 2.480e-29
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   13 VLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 342
             L  LPF D DYS++ G NCENV+GYVPVPVG AGPL++DG++  +PLATTEG LVAS NRGC A+           + SGG ++ VL DG+TR P + +P+   A+E++
Sbjct:  474 ALDNLPFRDYDYSKVTGTNCENVIGYVPVPVGVAGPLLLDGKEFHVPLATTEGCLVASTNRGCRAV-----------TLSGGVKSRVLADGMTRGPVVQLPSACRAAEVK 572          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB74_TRICV)

HSP 1 Score: 120 bits (300), Expect = 2.950e-29
Identity = 60/113 (53.10%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    7 GTVLSKLPFE-DMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 342
            G  L +LP E  +DY R++G NCE V+GYVP+P G  GPL +DGE V++P+ATTEG LVAS NRGC AIS+G           GGAR+ V+ DG+TRAPC+ M +   A+EL+
Sbjct:  292 GGALDELPHEPSLDYGRVHGANCEIVVGYVPLPCGVIGPLTLDGETVYVPMATTEGCLVASANRGCKAISQG-----------GGARSAVIRDGITRAPCVRMRSAMEAAELK 393          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: Hydroxymethylglutaryl-CoA (reductase (NADPH) (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUQ8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.670e-29
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    7 GTVLSKLPFE-DMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASEL 339
            G  L++LP + D+DY R+ G NCE V+GY+P+PVG AGP+ ++GE V+IP+ATTEG LVAS NRGC AI++G            GA + +L DG+TRAPC+ +P+ + ASE+
Sbjct:  257 GGALAELPHKHDLDYKRVLGANCEIVVGYIPIPVGMAGPITLNGESVYIPMATTEGCLVASTNRGCKAITQG-----------SGAVSSILRDGITRAPCVRLPSAKEASEV 357          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hydroxymethylglutaryl-CoA2.980e-7099.13reductase (NADPH) n=1 Tax=Ectocarpus siliculosus T... [more]
Hydroxymethylglutaryl-CoA8.560e-3497.06reductase (NADPH) n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
3-hydroxy-3-methylglutaryl5.900e-3254.55coenzyme A reductase n=1 Tax=Phaeomonas parva TaxI... [more]
3-hydroxy-3-methylglutaryl3.780e-3052.21coenzyme A reductase n=1 Tax=Tropilaelaps mercedes... [more]
3-hydroxy-3-methylglutaryl5.250e-3051.35coenzyme A reductase n=9 Tax=Siluroidei TaxID=1489... [more]
3-hydroxy-3-methylglutaryl5.550e-3051.82coenzyme A reductase (Fragment) n=1 Tax=Thalassios... [more]
3-hydroxy-3-methylglutaryl2.150e-2952.25coenzyme A reductase n=1 Tax=Tribonema minus TaxID... [more]
3-hydroxy-3-methylglutaryl2.480e-2951.82coenzyme A reductase n=1 Tax=Triplophysa tibetana ... [more]
3-hydroxy-3-methylglutaryl2.950e-2953.10coenzyme A reductase (Fragment) n=1 Tax=Trieres ch... [more]
Hydroxymethylglutaryl-CoA4.670e-2950.89reductase (NADPH) (Fragment) n=1 Tax=Skeletonema m... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11473contigEcto-sp9_F_contig11473:1015..2576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.0
Seed ortholog evalue1.8e-59
Seed eggNOG ortholog2880.D8LK73
Preferred nameHMGR
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
EggNOG free text desc.hydroxymethylglutaryl-CoA reductase (NADPH) activity
EggNOG OGsCOG1257@1,KOG2480@2759
EC1.1.1.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size347
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11473.1259.1prot_Ecto-sp9_F_contig11473.1259.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11473 1015..2576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928400.144553-CDS-Ecto-sp9_F_contig11473:1014..12181622928400.144553-CDS-Ecto-sp9_F_contig11473:1014..1218Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11473 1015..1218 -
1692277858.7752144-CDS-Ecto-sp9_F_contig11473:1014..12181692277858.7752144-CDS-Ecto-sp9_F_contig11473:1014..1218Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11473 1015..1218 -
1622928400.1586437-CDS-Ecto-sp9_F_contig11473:1873..19611622928400.1586437-CDS-Ecto-sp9_F_contig11473:1873..1961Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11473 1874..1961 -
1692277858.789931-CDS-Ecto-sp9_F_contig11473:1873..19611692277858.789931-CDS-Ecto-sp9_F_contig11473:1873..1961Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11473 1874..1961 -
1622928400.174867-CDS-Ecto-sp9_F_contig11473:2523..25761622928400.174867-CDS-Ecto-sp9_F_contig11473:2523..2576Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11473 2524..2576 -
1692277858.801823-CDS-Ecto-sp9_F_contig11473:2523..25761692277858.801823-CDS-Ecto-sp9_F_contig11473:2523..2576Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11473 2524..2576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11473.1259.1

>prot_Ecto-sp9_F_contig11473.1259.1 ID=prot_Ecto-sp9_F_contig11473.1259.1|Name=mRNA_Ecto-sp9_F_contig11473.1259.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
EGGTVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWI
PLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAP
CIAMPNIRLASELRR
back to top

mRNA from alignment at Ecto-sp9_F_contig11473:1015..2576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11473.1259.1 ID=mRNA_Ecto-sp9_F_contig11473.1259.1|Name=mRNA_Ecto-sp9_F_contig11473.1259.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1562bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11473:1015..2576- (Ectocarpus species9 EcSCA_722f female)
GAAGGTGGAACCGTATTGTCGAAGCTTCCCTTCGAGGACATGGACTACTC TCGGTGAGTGAGATGTTTTGGTGCTGACAAAGGGGTTTGGGGGACAGGCC GGGGGGGGGGGTCTTTCTGGGGCCCCGGTTCGATACGTGAAATCTTAGGG AGTAACATCGACATCCGTAGATTTTATGGAATGGCCGCGACACAAAGCGC GCACCTTTGGTCATGAATGGTCGGAGGGAGTCTTGGGGACGGGTGGTGGG GACTACCACAGGAGGAAGGATAACAGCGTGTTCTATGTCTTGGGGCACGA GCGGTTTGACAGAAGGTTGTGCGGCGTGTAGAGTCGAGGTCGAGTTATAG ACGATGATCGCGTCGGTGGTTGTTTTTTGGTGCGTCTGCGATGTTTGTAG CGTTTCATGCATATCAGCGGCAACGCTGCAAACACATGCAGGTACTCAAG TAGTGCAACTTCGATGCTTTTATTCAAGCCAACAGTTTTTCATTACTTCA CAGGCTGCAACATGGACGAAGTATCCACCTAACCCATTTCATCTTTGCCC GCCCCCCTCCGTTCGGTTTTTGTGTTGGATTTGATGCCACTGTTTTCTTC TTGTGTCTGAAACAGGATCTATGGCAAGAATTGCGAAAACGTGATGGGGT ACGTGCCGGTGCCAGTCGGCGCCGCGGGGCCCCTCATTGTCGACGGAGAG AAGGTGCGCTTAGTTGAGACTGATGGGTGAGGTTGTTTTTATATTTTATG AACCTCTTGTCGGGAGTGTATGAGAGTTTTTTTTCTTTCTTGTGTAAGCC CTTGGCTTGTGGAGAGTATAGCGAGTTTGTGTTCGGTCGGCGCATACATA TCGCGCCACCATACATGGCGTCAGTGGACCAACCTCTGGCAACAGAGTCG CTTATCAGCCGGCTGTATCGTGCTAAACCACCCACCCCCTTCCAAACACA CACACCATTGAAGTTGGGGTACCAGGCTGCTGTTGAGCCGGTTGACCACG CGGAGTGGGAATCCACGCCACAAAGCGGAAGGCAAGCACGAAAATGCCCC CCGCTCGTGGAACTCCGGTGCTCTCCAATGGTATGCGTCTGATACAGAGT GAATGAGAATATGGCAGCTAAGCACATGAAAGCACAACATTTTCGAAACG TAACAACCTAACCCCGACCCTAAAACGTACAGTTCCTGGTACACCGTACT CATACAACATACGTTGGTAACATGCATACACCGACTGAGGGAATAAGAAA TCTAGGATGGAGGAAAAAATAATGTTCTTGCTATCGTGCGACTGCTGTGT GGCCGGCGCTTTCCTTTTTCTTCTTTCATTTGTTTTTGTTCTCCGTCACA ACACGCAGGTCTGGATACCTCTCGCGACCACAGAGGGGGGCCTCGTGGCG AGCGTGAACAGAGGCTGCCTGGCCATTTCGGAGGGCGGCGACGGCGGGGG GTGGCGCAGCAGCACCAGCGGCGGTGCTCGGACGGAGGTGCTGGACGACG GGGTGACCAGGGCCCCCTGCATCGCAATGCCCAACATCCGGCTAGCCTCG GAACTGCGGCGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11473:1015..2576-

>mRNA_Ecto-sp9_F_contig11473.1259.1 ID=mRNA_Ecto-sp9_F_contig11473.1259.1|Name=mRNA_Ecto-sp9_F_contig11473.1259.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11473:1015..2576- (Ectocarpus species9 EcSCA_722f female)
GAAGGTGGAACCGTATTGTCGAAGCTTCCCTTCGAGGACATGGACTACTC
TCGGAAGGTGGAACCGTATTGTCGAAGCTTCCCTTCGAGGACATGGACTA
CTCTCGGATCTATGGCAAGAATTGCGAAAACGTGATGGGGTACGTGCCGG
TGCCAGTCGGCGCCGCGGGGCCCCTCATTGTCGACGGAGAGAAGGATCTA
TGGCAAGAATTGCGAAAACGTGATGGGGTACGTGCCGGTGCCAGTCGGCG
CCGCGGGGCCCCTCATTGTCGACGGAGAGAAGGTCTGGATACCTCTCGCG
ACCACAGAGGGGGGCCTCGTGGCGAGCGTGAACAGAGGCTGCCTGGCCAT
TTCGGAGGGCGGCGACGGCGGGGGGTGGCGCAGCAGCACCAGCGGCGGTG
CTCGGACGGAGGTGCTGGACGACGGGGTGACCAGGGCCCCCTGCATCGCA
ATGCCCAACATCCGGCTAGCCTCGGAACTGCGGCGGGTCTGGATACCTCT
CGCGACCACAGAGGGGGGCCTCGTGGCGAGCGTGAACAGAGGCTGCCTGG
CCATTTCGGAGGGCGGCGACGGCGGGGGGTGGCGCAGCAGCACCAGCGGC
GGTGCTCGGACGGAGGTGCTGGACGACGGGGTGACCAGGGCCCCCTGCAT
CGCAATGCCCAACATCCGGCTAGCCTCGGAACTGCGGCGG
back to top