mRNA_Ecto-sp9_F_contig11473.1259.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: Hydroxymethylglutaryl-CoA (reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK73_ECTSI) HSP 1 Score: 232 bits (591), Expect = 2.980e-70 Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 1
Query: 1 EGGTVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 345
EGGTVLSKLPFEDM YSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR
Sbjct: 163 EGGTVLSKLPFEDMAYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 277
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: Hydroxymethylglutaryl-CoA (reductase (NADPH) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV27_9PHAE) HSP 1 Score: 133 bits (334), Expect = 8.560e-34 Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1
Query: 142 VWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 345
VWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSS SGG RTEVLDDGVTRAPCIAMPNIRLASELRR
Sbjct: 3 VWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSASGGVRTEVLDDGVTRAPCIAMPNIRLASELRR 70
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA) HSP 1 Score: 125 bits (315), Expect = 5.900e-32 Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 1
Query: 13 VLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 342
V KLP + DY RI+G NCE V+GYVP+P G GPL++DGE V++P+ATTEG LVAS NRGC AI + GGAR VL DG+TRAPCI MP+ A++L+
Sbjct: 74 VFEKLPVDHFDYERIFGANCEIVVGYVPLPCGVVGPLLLDGEPVYVPMATTEGCLVASTNRGCKAI-----------TACGGARARVLKDGITRAPCILMPSAMAAADLK 172
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9X0Y6_9ACAR) HSP 1 Score: 122 bits (307), Expect = 3.780e-30 Identity = 59/113 (52.21%), Postives = 77/113 (68.14%), Query Frame = 1
Query: 1 EGGTVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASEL 339
E G L KLP+ DYS + G CENV+GYVPVPVG AGPL++DG K ++P+ATTEG LVAS NRGC AI + +GGA +E++DDG+TR P I +P++ AS +
Sbjct: 373 EAGQALQKLPYLHYDYSLVMGACCENVIGYVPVPVGVAGPLLLDGRKFYVPMATTEGCLVASTNRGCSAILK-----------AGGAHSEIIDDGMTRGPVIKLPSVMEASRI 474
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=9 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0SZT8_ICTPU) HSP 1 Score: 122 bits (306), Expect = 5.250e-30 Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 10 TVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 342
+ L LP+ D DYS++ G NCENV+GYVPVPVG AGPL++DG++ ++P+ATTEG LVAS NRGC AI + SGGA VL DG+TR P + +P++ A+E++
Sbjct: 477 SALENLPYTDYDYSKVMGTNCENVIGYVPVPVGVAGPLLLDGKEFYVPIATTEGCLVASTNRGCRAI-----------TLSGGASARVLADGMTRGPVVQLPSVCKAAEVK 576
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0R4_THAPS) HSP 1 Score: 119 bits (298), Expect = 5.550e-30 Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = 1
Query: 13 VLSKLPFE-DMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASEL 339
VLS+LP E D+DY R+ G NCE V+GY+P+PVG GP+ ++GE V+IP+ATTEG LVAS NRGC AI++G GAR+ +L DG+TRAPC+ +P+ A+++
Sbjct: 2 VLSELPHEHDLDYKRVLGANCEIVVGYIPIPVGIVGPVTLNGESVYIPMATTEGCLVASTNRGCKAITQG-----------SGARSTILRDGITRAPCVRLPSAHEAAQV 100
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA) HSP 1 Score: 120 bits (300), Expect = 2.150e-29 Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 13 VLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 345
L LP DY+R++G NCE V GYVP+PVG GPL++DG +V++P+ATTEG LVAS NRGC AIS+G GGAR+ VL DG+TRAPC+ MP+ A+ +++
Sbjct: 198 ALRALPHAGYDYARVFGANCEIVCGYVPLPVGIVGPLLLDGREVYVPMATTEGCLVASTNRGCKAISQG-----------GGARSVVLKDGITRAPCLRMPDTIGAARVKQ 297
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PCQ9_9TELE) HSP 1 Score: 120 bits (301), Expect = 2.480e-29 Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 1
Query: 13 VLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 342
L LPF D DYS++ G NCENV+GYVPVPVG AGPL++DG++ +PLATTEG LVAS NRGC A+ + SGG ++ VL DG+TR P + +P+ A+E++
Sbjct: 474 ALDNLPFRDYDYSKVTGTNCENVIGYVPVPVGVAGPLLLDGKEFHVPLATTEGCLVASTNRGCRAV-----------TLSGGVKSRVLADGMTRGPVVQLPSACRAAEVK 572
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB74_TRICV) HSP 1 Score: 120 bits (300), Expect = 2.950e-29 Identity = 60/113 (53.10%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 7 GTVLSKLPFE-DMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 342
G L +LP E +DY R++G NCE V+GYVP+P G GPL +DGE V++P+ATTEG LVAS NRGC AIS+G GGAR+ V+ DG+TRAPC+ M + A+EL+
Sbjct: 292 GGALDELPHEPSLDYGRVHGANCEIVVGYVPLPCGVIGPLTLDGETVYVPMATTEGCLVASANRGCKAISQG-----------GGARSAVIRDGITRAPCVRMRSAMEAAELK 393
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: Hydroxymethylglutaryl-CoA (reductase (NADPH) (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUQ8_9STRA) HSP 1 Score: 119 bits (297), Expect = 4.670e-29 Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 7 GTVLSKLPFE-DMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASEL 339
G L++LP + D+DY R+ G NCE V+GY+P+PVG AGP+ ++GE V+IP+ATTEG LVAS NRGC AI++G GA + +L DG+TRAPC+ +P+ + ASE+
Sbjct: 257 GGALAELPHKHDLDYKRVLGANCEIVVGYIPIPVGMAGPITLNGESVYIPMATTEGCLVASTNRGCKAITQG-----------SGAVSSILRDGITRAPCVRLPSAKEASEV 357 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11473.1259.1 >prot_Ecto-sp9_F_contig11473.1259.1 ID=prot_Ecto-sp9_F_contig11473.1259.1|Name=mRNA_Ecto-sp9_F_contig11473.1259.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp EGGTVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIback to top mRNA from alignment at Ecto-sp9_F_contig11473:1015..2576- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11473.1259.1 ID=mRNA_Ecto-sp9_F_contig11473.1259.1|Name=mRNA_Ecto-sp9_F_contig11473.1259.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1562bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11473:1015..2576- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11473:1015..2576- >mRNA_Ecto-sp9_F_contig11473.1259.1 ID=mRNA_Ecto-sp9_F_contig11473.1259.1|Name=mRNA_Ecto-sp9_F_contig11473.1259.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11473:1015..2576- (Ectocarpus species9 EcSCA_722f female)back to top |