prot_Ecto-sp9_F_contig11473.1259.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig11473.1259.1
Unique Nameprot_Ecto-sp9_F_contig11473.1259.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length115
Homology
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: Hydroxymethylglutaryl-CoA (reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK73_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 2.980e-70
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0
Query:    1 EGGTVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 115
            EGGTVLSKLPFEDM YSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR
Sbjct:  163 EGGTVLSKLPFEDMAYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 277          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: Hydroxymethylglutaryl-CoA (reductase (NADPH) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV27_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 8.560e-34
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0
Query:   48 VWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 115
            VWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSS SGG RTEVLDDGVTRAPCIAMPNIRLASELRR
Sbjct:    3 VWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSASGGVRTEVLDDGVTRAPCIAMPNIRLASELRR 70          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0Q7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.900e-32
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 0
Query:    5 VLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 114
            V  KLP +  DY RI+G NCE V+GYVP+P G  GPL++DGE V++P+ATTEG LVAS NRGC AI           +  GGAR  VL DG+TRAPCI MP+   A++L+
Sbjct:   74 VFEKLPVDHFDYERIFGANCEIVVGYVPLPCGVVGPLLLDGEPVYVPMATTEGCLVASTNRGCKAI-----------TACGGARARVLKDGITRAPCILMPSAMAAADLK 172          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9X0Y6_9ACAR)

HSP 1 Score: 122 bits (307), Expect = 3.780e-30
Identity = 59/113 (52.21%), Postives = 77/113 (68.14%), Query Frame = 0
Query:    1 EGGTVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASEL 113
            E G  L KLP+   DYS + G  CENV+GYVPVPVG AGPL++DG K ++P+ATTEG LVAS NRGC AI +           +GGA +E++DDG+TR P I +P++  AS +
Sbjct:  373 EAGQALQKLPYLHYDYSLVMGACCENVIGYVPVPVGVAGPLLLDGRKFYVPMATTEGCLVASTNRGCSAILK-----------AGGAHSEIIDDGMTRGPVIKLPSVMEASRI 474          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=9 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0SZT8_ICTPU)

HSP 1 Score: 122 bits (306), Expect = 5.250e-30
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 0
Query:    4 TVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 114
            + L  LP+ D DYS++ G NCENV+GYVPVPVG AGPL++DG++ ++P+ATTEG LVAS NRGC AI           + SGGA   VL DG+TR P + +P++  A+E++
Sbjct:  477 SALENLPYTDYDYSKVMGTNCENVIGYVPVPVGVAGPLLLDGKEFYVPIATTEGCLVASTNRGCRAI-----------TLSGGASARVLADGMTRGPVVQLPSVCKAAEVK 576          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0R4_THAPS)

HSP 1 Score: 119 bits (298), Expect = 5.550e-30
Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = 0
Query:    5 VLSKLPFE-DMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASEL 113
            VLS+LP E D+DY R+ G NCE V+GY+P+PVG  GP+ ++GE V+IP+ATTEG LVAS NRGC AI++G            GAR+ +L DG+TRAPC+ +P+   A+++
Sbjct:    2 VLSELPHEHDLDYKRVLGANCEIVVGYIPIPVGIVGPVTLNGESVYIPMATTEGCLVASTNRGCKAITQG-----------SGARSTILRDGITRAPCVRLPSAHEAAQV 100          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX65_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.150e-29
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 0
Query:    5 VLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELRR 115
             L  LP    DY+R++G NCE V GYVP+PVG  GPL++DG +V++P+ATTEG LVAS NRGC AIS+G           GGAR+ VL DG+TRAPC+ MP+   A+ +++
Sbjct:  198 ALRALPHAGYDYARVFGANCEIVCGYVPLPVGIVGPLLLDGREVYVPMATTEGCLVASTNRGCKAISQG-----------GGARSVVLKDGITRAPCLRMPDTIGAARVKQ 297          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PCQ9_9TELE)

HSP 1 Score: 120 bits (301), Expect = 2.480e-29
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    5 VLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 114
             L  LPF D DYS++ G NCENV+GYVPVPVG AGPL++DG++  +PLATTEG LVAS NRGC A+           + SGG ++ VL DG+TR P + +P+   A+E++
Sbjct:  474 ALDNLPFRDYDYSKVTGTNCENVIGYVPVPVGVAGPLLLDGKEFHVPLATTEGCLVASTNRGCRAV-----------TLSGGVKSRVLADGMTRGPVVQLPSACRAAEVK 572          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: 3-hydroxy-3-methylglutaryl (coenzyme A reductase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB74_TRICV)

HSP 1 Score: 120 bits (300), Expect = 2.950e-29
Identity = 60/113 (53.10%), Postives = 78/113 (69.03%), Query Frame = 0
Query:    3 GTVLSKLPFE-DMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASELR 114
            G  L +LP E  +DY R++G NCE V+GYVP+P G  GPL +DGE V++P+ATTEG LVAS NRGC AIS+G           GGAR+ V+ DG+TRAPC+ M +   A+EL+
Sbjct:  292 GGALDELPHEPSLDYGRVHGANCEIVVGYVPLPCGVIGPLTLDGETVYVPMATTEGCLVASANRGCKAISQG-----------GGARSAVIRDGITRAPCVRMRSAMEAAELK 393          
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Match: Hydroxymethylglutaryl-CoA (reductase (NADPH) (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUQ8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.670e-29
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 0
Query:    3 GTVLSKLPFE-DMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWIPLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAPCIAMPNIRLASEL 113
            G  L++LP + D+DY R+ G NCE V+GY+P+PVG AGP+ ++GE V+IP+ATTEG LVAS NRGC AI++G            GA + +L DG+TRAPC+ +P+ + ASE+
Sbjct:  257 GGALAELPHKHDLDYKRVLGANCEIVVGYIPIPVGMAGPITLNGESVYIPMATTEGCLVASTNRGCKAITQG-----------SGAVSSILRDGITRAPCVRLPSAKEASEV 357          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11473.1259.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hydroxymethylglutaryl-CoA2.980e-7099.13reductase (NADPH) n=1 Tax=Ectocarpus siliculosus T... [more]
Hydroxymethylglutaryl-CoA8.560e-3497.06reductase (NADPH) n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
3-hydroxy-3-methylglutaryl5.900e-3254.55coenzyme A reductase n=1 Tax=Phaeomonas parva TaxI... [more]
3-hydroxy-3-methylglutaryl3.780e-3052.21coenzyme A reductase n=1 Tax=Tropilaelaps mercedes... [more]
3-hydroxy-3-methylglutaryl5.250e-3051.35coenzyme A reductase n=9 Tax=Siluroidei TaxID=1489... [more]
3-hydroxy-3-methylglutaryl5.550e-3051.82coenzyme A reductase (Fragment) n=1 Tax=Thalassios... [more]
3-hydroxy-3-methylglutaryl2.150e-2952.25coenzyme A reductase n=1 Tax=Tribonema minus TaxID... [more]
3-hydroxy-3-methylglutaryl2.480e-2951.82coenzyme A reductase n=1 Tax=Triplophysa tibetana ... [more]
3-hydroxy-3-methylglutaryl2.950e-2953.10coenzyme A reductase (Fragment) n=1 Tax=Trieres ch... [more]
Hydroxymethylglutaryl-CoA4.670e-2950.89reductase (NADPH) (Fragment) n=1 Tax=Skeletonema m... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002202Hydroxymethylglutaryl-CoA reductase, class I/IIPRINTSPR00071HMGCOARDTASEcoord: 23..44
score: 60.61
coord: 50..70
score: 75.3
IPR002202Hydroxymethylglutaryl-CoA reductase, class I/IIPFAMPF00368HMG-CoA_redcoord: 6..113
e-value: 5.7E-27
score: 94.7
IPR002202Hydroxymethylglutaryl-CoA reductase, class I/IIPANTHERPTHR105723-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASEcoord: 6..114
IPR002202Hydroxymethylglutaryl-CoA reductase, class I/IIPROSITEPS50065HMG_COA_REDUCTASE_4coord: 3..114
score: 26.45
IPR023074Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamilyGENE3D3.90.770.10coord: 34..112
e-value: 8.7E-17
score: 63.3
IPR023282Hydroxymethylglutaryl-CoA reductase, N-terminalGENE3D1.10.3270.10coord: 2..33
e-value: 7.6E-9
score: 37.2
NoneNo IPR availablePANTHERPTHR10572:SF23-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASEcoord: 6..114
IPR009029Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamilySUPERFAMILY56542Substrate-binding domain of HMG-CoA reductasecoord: 6..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11473contigEcto-sp9_F_contig11473:1015..2576 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11473.1259.1mRNA_Ecto-sp9_F_contig11473.1259.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig11473 1015..2576 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig11473.1259.1 ID=prot_Ecto-sp9_F_contig11473.1259.1|Name=mRNA_Ecto-sp9_F_contig11473.1259.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
EGGTVLSKLPFEDMDYSRIYGKNCENVMGYVPVPVGAAGPLIVDGEKVWI
PLATTEGGLVASVNRGCLAISEGGDGGGWRSSTSGGARTEVLDDGVTRAP
CIAMPNIRLASELRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002202HMG_CoA_Rdtase
IPR023074HMG_CoA_Rdtase_cat_sf
IPR023282HMG_CoA_Rdtase_N
IPR009029HMG_CoA_Rdtase_sub-bd_dom_sf