mRNA_Ecto-sp9_F_contig11117.967.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig11117.967.1
Unique Name	mRNA_Ecto-sp9_F_contig11117.967.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig11117.967.1 vs.
Match: PPR_long (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.320e-15
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 2

Query:  335 CVRVNQQMETAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKR 469
            CV  N  +  AGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKR
Sbjct:  642 CVPANLPVFEAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKR 686

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig11117.967.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig11117.967.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
PPR_long	2.320e-15	84.44	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig11117	contig	Ecto-sp9_F_contig11117:754..3399 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	84.0
Seed ortholog evalue	6.6e-14
Seed eggNOG ortholog	2880.D7FY15
EggNOG free text desc.	endonuclease activity
EggNOG OGs	KOG4197@1,KOG4197@2759
Ec32 ortholog description	Pentatricopeptide repeat
Ec32 ortholog	Ec-08_004690.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	4
Model size	470
Cds size	444
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig11117.967.1	prot_Ecto-sp9_F_contig11117.967.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig11117 754..3374 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928351.6489325-CDS-Ecto-sp9_F_contig11117:753..858	1622928351.6489325-CDS-Ecto-sp9_F_contig11117:753..858	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11117 754..858 -
1692277842.3287969-CDS-Ecto-sp9_F_contig11117:753..858	1692277842.3287969-CDS-Ecto-sp9_F_contig11117:753..858	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11117 754..858 -
1622928351.6658738-CDS-Ecto-sp9_F_contig11117:1578..1732	1622928351.6658738-CDS-Ecto-sp9_F_contig11117:1578..1732	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11117 1579..1732 -
1692277842.34309-CDS-Ecto-sp9_F_contig11117:1578..1732	1692277842.34309-CDS-Ecto-sp9_F_contig11117:1578..1732	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11117 1579..1732 -
1622928351.6802022-CDS-Ecto-sp9_F_contig11117:2570..2689	1622928351.6802022-CDS-Ecto-sp9_F_contig11117:2570..2689	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11117 2571..2689 -
1692277842.3514793-CDS-Ecto-sp9_F_contig11117:2570..2689	1692277842.3514793-CDS-Ecto-sp9_F_contig11117:2570..2689	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11117 2571..2689 -
1622928351.6950917-CDS-Ecto-sp9_F_contig11117:3308..3374	1622928351.6950917-CDS-Ecto-sp9_F_contig11117:3308..3374	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11117 3309..3374 -
1692277842.3603437-CDS-Ecto-sp9_F_contig11117:3308..3374	1692277842.3603437-CDS-Ecto-sp9_F_contig11117:3308..3374	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11117 3309..3374 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928351.7134366-UTR-Ecto-sp9_F_contig11117:3374..3399	1622928351.7134366-UTR-Ecto-sp9_F_contig11117:3374..3399	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11117 3375..3399 -
1692277842.3707085-UTR-Ecto-sp9_F_contig11117:3374..3399	1692277842.3707085-UTR-Ecto-sp9_F_contig11117:3374..3399	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11117 3375..3399 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig11117:754..3399-
coding sequence from alignment at Ecto-sp9_F_contig11117:754..3399-

protein sequence of mRNA_Ecto-sp9_F_contig11117.967.1

>prot_Ecto-sp9_F_contig11117.967.1 ID=prot_Ecto-sp9_F_contig11117.967.1|Name=mRNA_Ecto-sp9_F_contig11117.967.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=148bp
MLEEIRAAGFKVNCMAYSAAIKACDKAFQWERAMELLDRMVERDGVKPNL
FAYNHAMSACVRGQQPEVALELLDRMKAEGLHMDRMTYGVLMFLHSRKGD
HEECVRVNQQMETAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKR

mRNA from alignment at Ecto-sp9_F_contig11117:754..3399-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig11117.967.1 ID=mRNA_Ecto-sp9_F_contig11117.967.1|Name=mRNA_Ecto-sp9_F_contig11117.967.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2646bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11117:754..3399- (Ectocarpus species9 EcSCA_722f female)
GGGGGAGTGGGAGAAAGCCCTGTCCATGCTAGAAGAGATTCGCGCGGCCG
GTTTCAAGGTCAACTGCATGGCCTACAGCGCCGCCATCAAGGTCAGGGCG
CTTGGGCCAACGCACTGCTCCGACTTGTTTCTTTTGTTTGTTTTTTCACG
AATGTGGCGGAAGGGCGACCCGCAGGAATCAACCATGGAGCAGAACAGCA
GTGGTACAGCAGTTGTGCCTTGCTGTTGGAAACAGGCACTGCTGTGGCGA
TGGCATCAGCATGTGTTGGTGGGAGGCCGCTCTCTCCCTCGATTTTTTTG
GCCACTGCTGCTGTGTAGTTCGCCGGCCAGAATGAACCCCCTACGATGAC
GATAGGGGAGGGAAAAAACAAGAAAACTTCCAAGAATTCTGCCCCCATGA
ACTGCTGCTGTCCGCCCTCAAGTTACCACCGAAGTGCAGTAAATCCGCAC
ATTTTTGTTTTTGCAATCGCCCCACTCCGCCTTCAGGCCACCGCGGCTCA
TCGTTCCGGTGCACTTCTCGCTTGCTTCTGCTGCTGCTGCTGCTGCTGCT
GTAATGCTGCTGCTGTAATGCTGCGTCTGCTGCTGCTGTAATGCTGCTTC
TGCTGCTGCTGTAATGCTGCTGCTGTAATGCTGCGTCTGCTGCTGCTGTA
ATGCTGCGTCTGCTGCTGCTGTAATGCTGCTTCTGCTGCTGCTGTAATGC
TGCTGCACAGGCGTGCGACAAAGCCTTCCAGTGGGAGAGGGCCATGGAGC
TGCTGGACAGGATGGTGGAGAGGGACGGGGTCAAGCCCAACCTCTTCGCC
TACAACCACGCCATGTCCGCCTGCGTCCGGTGAGCTATCATAAACATAGC
TGCATACAGGAAACAGGCGGTGCTCGCTGAGCAACGAGCTACAGCAGTGA
TAACCTTCCGACCAAGCTGCTTCTTTTTTTTCGTGAGGCGTTTTTTCTTC
GTACGGGGAGGAAAGAGTCCGACGGCTCTCTCTCTCTCTCTGTGTGTCAT
TTTCCTGTACGTGTAACGATCCCCACGTTTTTTTCGTTCTTTGGTTTCTT
TTTGCGCTTCTTTCATACGAGGGAGGTTTTTTCTCGGAGTTCCGCGGCTG
TCTCGCTGCCGTTTTCCTACACGTGTAGCCATCCGCGAAGCGTTTCTTTC
TCCCGTGCTTGCTTGATTGATTTTGTGCGAGAGACGTTTTTCTCCTCGTC
GTGCCGGGAGGAAGGAGTTCCATTGCTCTCTGGCATTTTTACTTCTAGGG
GAAAGGGTGGGGACAGGGTACCGTTTCACCCACTTCATTTGCGTGACAGC
AGTCTCCCTGTTTCCGAGGGCACATTTTTAATCTAAGACAAAAACACGAC
GAAATAATATCTATCCACAGATAAGAGTCCGGGATTTTGTATTGTCTTTT
CCCTCGTGGTGTAAAACAAGATTGTCGTCAACTGCTGTGTCATCTCGTCT
CACTCGATTTTAAAAGGCAAAAAATTTACCTGTAGGGTCAGCGATTTCCC
AAAATCGCGATTGTGCTGGTGCTGTTTACCGAGAGAATTGGCAGAATCGG
CTGACTCGGCCGGCCTAGAGTCTCAATTTGCCTCTGTACGATCATCCCGT
CGCCCCACGTCCTCCCTGTCTGCGTGCGCCCTCCTCCGAACCGATGCTGC
TGCTGCTGCTTCTGCAGGGGGCAGCAGCCGGAGGTTGCACTTGAACTTCT
GGACCGCATGAAGGCGGAGGGGCTGCACATGGACCGCATGACGTACGGGG
TGCTCATGTTCCTGCACAGCCGGAAGGGGGACCATGAGGAGTGCGTACGG
GTTAACCAGCAGATGGAAACGGTACGCTTGTGGTTGTTGTTGTTTTTGTT
GTGGTTGTGGTTGTTGTTGGTGTTGGTGTTGGTATTGGTGTTGGTGTTGG
TGTTGGTGTTGTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTGGTGGTGTTGGTGGTGGTGTTAGTG
TTGGTGGTGCTATCGTCGAACCCCCGAATAATGGCGAACAACCGGCAGAT
GATAACGGTATGCTTGTTGTTGTTGTTGTTGTTGTCGAGCCCCACAAATA
TTGACGAACAGACAGCAGATGGAAGAGGTGCGCTTGTTCTTGTCATCGTT
GTTGTTGTCGTCGAAAATGCCGAACATCCTCGAGGACTAGCAGCGGCCAT
CATACCACGGACTCATACCTTCTCCCGCCCCCCGTCAGGAACGGCAACGA
AAACAATAGTCACCTCCTTCTGGTTTGGCACAGCAAACGCAAGGATGGTA
ATGGCCAGCTTTCTGATTCATCCTTGTGAAGAACGTGTAGCCTGGGCCGC
CGAAAACTCGGCATATCACTTCTCCGTCCGGAGGGATGCGAGATCGATGG
TCTGACGACTACCGCATGCGTTTACAGCATATCTCTCCGTCCCGGCATTT
GCAAGTGATGCGAGACCGATGGTCTAACGACTCGACGGCATGCGTTTACA
TGAGTAGTACTCCCCCCCTGATCTGGTTCGTCTTCGGGCAGGCGGGCATC
CCCGGAGACTGGTACAGCAACCACGCCCTACTTGAGGCGCTCGGCCGGGG
GGGGAGGTGGGAGGAGGCCGTGAAGACGTTCGAGGACAAGAAGAGG

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11117:754..3399-

>mRNA_Ecto-sp9_F_contig11117.967.1 ID=mRNA_Ecto-sp9_F_contig11117.967.1|Name=mRNA_Ecto-sp9_F_contig11117.967.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11117:754..3399- (Ectocarpus species9 EcSCA_722f female)
ATGCTAGAAGAGATTCGCGCGGCCGGTTTCAAGGTCAACTGCATGGCCTA
CAGCGCCGCCATCAAGATGCTAGAAGAGATTCGCGCGGCCGGTTTCAAGG
TCAACTGCATGGCCTACAGCGCCGCCATCAAGGCGTGCGACAAAGCCTTC
CAGTGGGAGAGGGCCATGGAGCTGCTGGACAGGATGGTGGAGAGGGACGG
GGTCAAGCCCAACCTCTTCGCCTACAACCACGCCATGTCCGCCTGCGTCC
GGCGTGCGACAAAGCCTTCCAGTGGGAGAGGGCCATGGAGCTGCTGGACA
GGATGGTGGAGAGGGACGGGGTCAAGCCCAACCTCTTCGCCTACAACCAC
GCCATGTCCGCCTGCGTCCGGGGGCAGCAGCCGGAGGTTGCACTTGAACT
TCTGGACCGCATGAAGGCGGAGGGGCTGCACATGGACCGCATGACGTACG
GGGTGCTCATGTTCCTGCACAGCCGGAAGGGGGACCATGAGGAGTGCGTA
CGGGTTAACCAGCAGATGGAAACGGGGGCAGCAGCCGGAGGTTGCACTTG
AACTTCTGGACCGCATGAAGGCGGAGGGGCTGCACATGGACCGCATGACG
TACGGGGTGCTCATGTTCCTGCACAGCCGGAAGGGGGACCATGAGGAGTG
CGTACGGGTTAACCAGCAGATGGAAACGGCGGGCATCCCCGGAGACTGGT
ACAGCAACCACGCCCTACTTGAGGCGCTCGGCCGGGGGGGGAGGTGGGAG
GAGGCCGTGAAGACGTTCGAGGACAAGAAGAGGGCGGGCATCCCCGGAGA
CTGGTACAGCAACCACGCCCTACTTGAGGCGCTCGGCCGGGGGGGGAGGT
GGGAGGAGGCCGTGAAGACGTTCGAGGACAAGAAGAGG