prot_Ecto-sp9_F_contig11117.967.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig11117.967.1
Unique Nameprot_Ecto-sp9_F_contig11117.967.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length148
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11117.967.1 vs.
Match: PPR_long (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.790e-15
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0 
Query:  104 CVRVNQQMETAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKR 148
            CV  N  +  AGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKR
Sbjct:  642 CVPANLPVFEAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKR 686
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11117.967.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
PPR_long1.790e-1584.44domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 2..61
e-value: 1.4E-8
score: 34.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 52..84
e-value: 3.2E-6
score: 25.0
coord: 16..49
e-value: 2.7E-4
score: 18.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 87..116
e-value: 0.14
score: 12.5
coord: 125..145
e-value: 0.078
score: 13.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 13..48
score: 8.966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 84..118
score: 8.462
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 119..148
score: 8.013
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 49..83
score: 9.975
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..148
e-value: 4.8E-35
score: 123.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 14..143
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 2..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11117contigEcto-sp9_F_contig11117:754..3374 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11117.967.1mRNA_Ecto-sp9_F_contig11117.967.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig11117 754..3399 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig11117.967.1 ID=prot_Ecto-sp9_F_contig11117.967.1|Name=mRNA_Ecto-sp9_F_contig11117.967.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=148bp
MLEEIRAAGFKVNCMAYSAAIKACDKAFQWERAMELLDRMVERDGVKPNL
FAYNHAMSACVRGQQPEVALELLDRMKAEGLHMDRMTYGVLMFLHSRKGD
HEECVRVNQQMETAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf