mRNA_Ecto-sp9_F_contig11113.964.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig11113.964.1
Unique Name	mRNA_Ecto-sp9_F_contig11113.964.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Match: USP (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.030e-29
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1

Query:    7 KELYLDSKIKAGLRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYG 177
            KELYLDSKIKA L+WKQV+RMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYG
Sbjct:  245 KELYLDSKIKACLQWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYG 301

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 7.160e-17
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:   10 ELYLDSKIKAGLRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGQ 180
            ELY +S+++  L W+   ++G GL N+GNTC+LN+ LQCLSY+PPLAQHLLNG Y Q
Sbjct:  113 ELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGSYSQ 169

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.790e-17
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1

Query:   10 ELYLDSKIKAGLRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGQ 180
            ELY +S+++  L W+   ++G GL N+GNTC+LN+ LQCLSY+PPLAQHLLNG Y Q
Sbjct:  113 ELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGGYSQ 169

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Match: USP (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.360e-15
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1

Query:   43 LRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYG 177
            L W+++ ++GPGL+NLGNTCFLNATLQCL Y PPL QHLLN  YG
Sbjct:    1 LEWRELSKVGPGLQNLGNTCFLNATLQCLLYCPPLVQHLLNHKYG 45

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC)

HSP 1 Score: 75.9 bits (185), Expect = 1.420e-14
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1

Query:    7 KELYLDSKIKAGLRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLN 165
            K ++ +SKI   + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ L+
Sbjct:  114 KGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLS 166

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.440e-14
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1

Query:    7 KELYLDSKIKAGLRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLN 165
            K ++ +SKI   + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ L+
Sbjct:  114 KGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLS 166

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.440e-14
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 1

Query:    7 KELYLDSKIKAGLRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLN 165
            K ++ +SKI   + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ L+
Sbjct:  114 KGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLS 166

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Match: ubiquitin (carboxyl-terminal hydrolase 36-like n=1 Tax=Chlamydotis macqueenii TaxID=187382 RepID=UPI0005297C4E)

HSP 1 Score: 73.6 bits (179), Expect = 1.930e-14
Identity = 29/47 (61.70%), Postives = 40/47 (85.11%), Query Frame = 1

Query:   43 LRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGQV 183
            ++W+QVYR+G GL NLGNTCFLN++LQCL++ PPLA +LL+G + Q 
Sbjct:  105 MKWEQVYRVGAGLHNLGNTCFLNSSLQCLTHTPPLANYLLSGEHSQT 151

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DX59_9ASCI)

HSP 1 Score: 75.1 bits (183), Expect = 2.680e-14
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1

Query:   19 LDSKIKAGLRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGQV 183
            L S  K  L WK+ YR+G GL NLGNTCFLN+ LQCLSY PPL  +LLNG +  V
Sbjct:  100 LFSPEKMDLHWKKTYRIGSGLVNLGNTCFLNSALQCLSYTPPLTNYLLNGDHRSV 154

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Match: USP (domain-containing protein (Fragment) n=1 Tax=Micrurus paraensis TaxID=1970185 RepID=A0A2D4JT96_9SAUR)

HSP 1 Score: 71.6 bits (174), Expect = 3.390e-14
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 1

Query:   34 KAGLRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLN 165
            +  L+W++VYR+G GL NLGNTCFLN+TLQCL+Y PPLA +LL+
Sbjct:  107 RLSLKWERVYRVGAGLHNLGNTCFLNSTLQCLTYTPPLANYLLS 150

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig11113.964.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
USP	1.030e-29	94.74	domain-containing protein n=2 Tax=Ectocarpus TaxID...	[more]
Ubiquitin	7.160e-17	59.65	carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sil...	[more]
Ubiquitin	9.790e-17	59.65	carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp....	[more]
USP	2.360e-15	71.11	domain-containing protein (Fragment) n=1 Tax=Tribo...	[more]
Ubiquitin	1.420e-14	64.15	carboxyl-terminal hydrolase n=1 Tax=Nannochloropsi...	[more]
Ubiquitin	1.440e-14	64.15	carboxyl-terminal hydrolase n=1 Tax=Nannochloropsi...	[more]
Ubiquitin	1.440e-14	64.15	carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloro...	[more]
ubiquitin	1.930e-14	61.70	carboxyl-terminal hydrolase 36-like n=1 Tax=Chlamy...	[more]
Ubiquitin	2.680e-14	61.82	carboxyl-terminal hydrolase n=1 Tax=Phallusia mamm...	[more]
USP	3.390e-14	65.91	domain-containing protein (Fragment) n=1 Tax=Micru...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig11113	contig	Ecto-sp9_F_contig11113:139..327 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	122.1
Seed ortholog evalue	9.2e-26
Seed eggNOG ortholog	2880.D8LD97
KEGG ko	ko:K11855
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
EggNOG free text desc.	ubiquitinyl hydrolase activity
EggNOG OGs	KOG1865@1,KOG1865@2759
EC	3.4.19.12
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko01002,ko04121
Hectar predicted targeting category	other localisation
Exons	1
Model size	189
Cds size	186
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928351.3746562-UTR-Ecto-sp9_F_contig11113:138..141	1622928351.3746562-UTR-Ecto-sp9_F_contig11113:138..141	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11113 139..141 +
1692277842.2490249-UTR-Ecto-sp9_F_contig11113:138..141	1692277842.2490249-UTR-Ecto-sp9_F_contig11113:138..141	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11113 139..141 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928351.3858232-CDS-Ecto-sp9_F_contig11113:141..327	1622928351.3858232-CDS-Ecto-sp9_F_contig11113:141..327	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11113 142..327 +
1692277842.2682383-CDS-Ecto-sp9_F_contig11113:141..327	1692277842.2682383-CDS-Ecto-sp9_F_contig11113:141..327	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11113 142..327 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig11113.964.1	prot_Ecto-sp9_F_contig11113.964.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig11113 142..327 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig11113:139..327+
coding sequence from alignment at Ecto-sp9_F_contig11113:139..327+

protein sequence of mRNA_Ecto-sp9_F_contig11113.964.1

>prot_Ecto-sp9_F_contig11113.964.1 ID=prot_Ecto-sp9_F_contig11113.964.1|Name=mRNA_Ecto-sp9_F_contig11113.964.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=62bp
MKELYLDSKIKAGLRWKQVYRMGPGLRNLGNTCFLNATLQCLSYLPPLAQ
HLLNGFYGQVR*

mRNA from alignment at Ecto-sp9_F_contig11113:139..327+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig11113.964.1 ID=mRNA_Ecto-sp9_F_contig11113.964.1|Name=mRNA_Ecto-sp9_F_contig11113.964.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11113:139..327+ (Ectocarpus species9 EcSCA_722f female)
GCCATGAAGGAGCTCTACCTCGACTCTAAAATCAAGGCAGGTCTCCGGTG
GAAGCAAGTCTACAGGATGGGACCGGGGCTCCGTAATCTGGGCAACACCT
GCTTCCTTAACGCCACCCTGCAGTGCCTCAGCTACCTTCCCCCGCTGGCC
CAGCACCTCCTCAATGGGTTCTACGGTCAGGTGCGATAA

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11113:139..327+

>mRNA_Ecto-sp9_F_contig11113.964.1 ID=mRNA_Ecto-sp9_F_contig11113.964.1|Name=mRNA_Ecto-sp9_F_contig11113.964.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11113:139..327+ (Ectocarpus species9 EcSCA_722f female)
ATGAAGGAGCTCTACCTCGACTCTAAAATCAAGGCAGGTCTCCGGTGGAA
GCAAGTCTACAGGATGGGACCGGGGCTCCGTAATCTGGGCAACACCTGCT
TCCTTAACGCCACCCTGCAGTGCCTCAGCTACCTTCCCCCGCTGGCCCAG
CACCTCCTCAATGGGTTCTACGGTCAGGTGCGATAAATGAAGGAGCTCTA
CCTCGACTCTAAAATCAAGGCAGGTCTCCGGTGGAAGCAAGTCTACAGGA
TGGGACCGGGGCTCCGTAATCTGGGCAACACCTGCTTCCTTAACGCCACC
CTGCAGTGCCTCAGCTACCTTCCCCCGCTGGCCCAGCACCTCCTCAATGG
GTTCTACGGTCAGGTGCGATAA