mRNA_Ecto-sp9_F_contig11099.950.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11099.950.1
Unique NamemRNA_Ecto-sp9_F_contig11099.950.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11099.950.1 vs.
Match: PsbP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH7_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 1.370e-111
Identity = 178/187 (95.19%), Postives = 180/187 (96.26%), Query Frame = 2 
Query:    2 VNSVLSAYGIPMIAEDGGFTSSYVKVEDNGQGTVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMGTPSKAKTIGDVGALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVERISYIAATVKQRKLFTLVATVSSERRNKMDLILNSIQASFRVGDVGVVETSSTDFNTK 562
            VNSVLSAYGIPMIAEDGGFTSSYVKVEDNGQ TVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMG PSKAKTIGDV ALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVER+SYIAATVKQRKL TLVATVS ERRNKMDLIL +IQASFRVGDVGVVETSSTDFN K
Sbjct:   76 VNSVLSAYGIPMIAEDGGFTSSYVKVEDNGQETVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMGAPSKAKTIGDVSALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVERVSYIAATVKQRKLLTLVATVSGERRNKMDLILKAIQASFRVGDVGVVETSSTDFNIK 262
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BLAST of mRNA_Ecto-sp9_F_contig11099.950.1 vs.
Match: PsbP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW7_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 4.040e-109
Identity = 173/176 (98.30%), Postives = 174/176 (98.86%), Query Frame = 2 
Query:   35 MIAEDGGFTSSYVKVEDNGQGTVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMGTPSKAKTIGDVGALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVERISYIAATVKQRKLFTLVATVSSERRNKMDLILNSIQASFRVGDVGVVETSSTDFNTK 562
            MIAEDG FTSSYVKVEDNGQGTVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMGTPSKAKTIGDVGALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVERISYIAATVKQRKLFTLVATVSSERRNKMDLILN+IQASFRVGDVGVVETSSTD NTK
Sbjct:    1 MIAEDGDFTSSYVKVEDNGQGTVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMGTPSKAKTIGDVGALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVERISYIAATVKQRKLFTLVATVSSERRNKMDLILNAIQASFRVGDVGVVETSSTDLNTK 176
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BLAST of mRNA_Ecto-sp9_F_contig11099.950.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUM0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.540e-14
Identity = 58/180 (32.22%), Postives = 93/180 (51.67%), Query Frame = 2 
Query:    2 VNSVLSAYGIPMIAEDGGFTSSYVKVED--NGQGTVCAYAYPVGWVEKKKADGFATAANYQTGDSLSLNMGTPSK--AKTIGDVGALAIAAEATPSEG-----AAKVLQ-EKAVTKGGVNYTYLTVKYNTVTRSGYDVERISYIAATVKQRKLFTLVATVSSERRNKMDLILNSIQASFR 511
            VNSVL AYG+P +  + GF + + +      G   + ++AYP  WVE  K      A+NYQTGD + L      +   +++ D+    +A   TP +      A KV++ E+  +     Y  +T+K+NT+T SGYDVE+    + T+ +  LF L A+  + R+ KM+  +     SFR
Sbjct:   15 VNSVLGAYGVPYMDSEIGFAALFEETTAPYGGAKAIISFAYPKTWVETTKGRTLG-ASNYQTGDRVVLVTKAKGQYDGRSVMDIPVQELAEVITPGDATQAASAYKVMKDEQLASMKSQEYRLVTLKFNTITSSGYDVEQYLVASCTLSKGNLFCLAASCPTARKKKMEESITKTALSFR 193
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BLAST of mRNA_Ecto-sp9_F_contig11099.950.1 vs.
Match: Uncharacterized (protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSH8_PORPP)

HSP 1 Score: 59.3 bits (142), Expect = 3.860e-6
Identity = 52/189 (27.51%), Postives = 89/189 (47.09%), Query Frame = 2 
Query:    2 VNSVLSAYGIPMIAEDGGFTSSYVKVEDNGQGTVCAYAYPVGWVEKKKADGFATA----------ANYQTGDSLSLNMGTPS------KAKTIGDVGALAIAAEATPSEGAAKVLQEKAVTKGGVNYTYLTVKYNTVTRSGYDVERISYIAATVKQRKLFTLVATVSSERRNK----MDLILNSIQASF 508
            VN+ LS YGIP + +  G+T+   + +D   G    + YP  WV  +     + A          +NY+T D  +L +G P        A ++ ++ AL +  +AT       ++++ A +    +      K+N+ TRSGYDVER +  +ATV +  +  L  +  S R       + LI +S QA++
Sbjct:   86 VNAALSGYGIP-VQDVAGYTTFVHQWDD---GLFVKFQYPKSWVVSRVGSSLSAAPGKAVSPVSMSNYRTADQCALYVGPPQPKYRDISAVSVEELTALVLPGDATRDYSEYTLIRQ-AASAANASCKQYEFKFNSTTRSGYDVERYNVTSATVLKTCVVALSCSCVSNRIKSQAPALKLIADSFQATW 269
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11099.950.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
PsbP1.370e-11195.19domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
PsbP4.040e-10998.30domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical3.540e-1432.22protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized3.860e-627.51protein n=1 Tax=Porphyridium purpureum TaxID=35688... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11099contigEcto-sp9_F_contig11099:393..2099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1487
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11099.950.1prot_Ecto-sp9_F_contig11099.950.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11099 1315..2065 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928349.3926342-UTR-Ecto-sp9_F_contig11099:392..13141622928349.3926342-UTR-Ecto-sp9_F_contig11099:392..1314Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11099 393..1314 -
1692277841.2811458-UTR-Ecto-sp9_F_contig11099:392..13141692277841.2811458-UTR-Ecto-sp9_F_contig11099:392..1314Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11099 393..1314 -
1622928349.4237568-UTR-Ecto-sp9_F_contig11099:2065..20991622928349.4237568-UTR-Ecto-sp9_F_contig11099:2065..2099Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11099 2066..2099 -
1692277841.3066416-UTR-Ecto-sp9_F_contig11099:2065..20991692277841.3066416-UTR-Ecto-sp9_F_contig11099:2065..2099Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11099 2066..2099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928349.4029136-CDS-Ecto-sp9_F_contig11099:1314..15871622928349.4029136-CDS-Ecto-sp9_F_contig11099:1314..1587Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11099 1315..1587 -
1692277841.2894337-CDS-Ecto-sp9_F_contig11099:1314..15871692277841.2894337-CDS-Ecto-sp9_F_contig11099:1314..1587Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11099 1315..1587 -
1622928349.4132605-CDS-Ecto-sp9_F_contig11099:1807..20651622928349.4132605-CDS-Ecto-sp9_F_contig11099:1807..2065Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11099 1808..2065 -
1692277841.297633-CDS-Ecto-sp9_F_contig11099:1807..20651692277841.297633-CDS-Ecto-sp9_F_contig11099:1807..2065Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11099 1808..2065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11099.950.1

>prot_Ecto-sp9_F_contig11099.950.1 ID=prot_Ecto-sp9_F_contig11099.950.1|Name=mRNA_Ecto-sp9_F_contig11099.950.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=177bp
MIAEDGGFTSSYVKVEDNGQGTVCAYAYPVGWVEKKKADGFATAANYQTG
DSLSLNMGTPSKAKTIGDVGALAIAAEATPSEGAAKVLQEKAVTKGGVNY
TYLTVKYNTVTRSGYDVERISYIAATVKQRKLFTLVATVSSERRNKMDLI
LNSIQASFRVGDVGVVETSSTDFNTK*
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mRNA from alignment at Ecto-sp9_F_contig11099:393..2099-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11099.950.1 ID=mRNA_Ecto-sp9_F_contig11099.950.1|Name=mRNA_Ecto-sp9_F_contig11099.950.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1707bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11099:393..2099- (Ectocarpus species9 EcSCA_722f female)
GGTAAATAGCGTGCTCTCCGCGTACGGCATACCTATGATCGCGGAAGATG
GTGGTTTCACCTCTTCATACGTCAAAGTGGAGGATAATGGGCAAGGGACA
GTGTGTGCGTACGCTTATCCGGTCGGGTGGGTGGAAAAGAAGAAGGCGGA
TGGGTTTGCGACGGCTGCCAACTACCAAACAGGAGATAGCTTGAGTTTAA
ACATGGGTACGCCAAGCAAAGCCAAGACGATAGGAGATGTGGGTGCGCTC
GCCATCGCAGCAGAAGCAACGCCGTCTGAAGGAGCTGCAAAGGTAAATCG
TGTTGGTGTCGCTGCCATTTTGCAGACATACCGAAAGTGCCCGCTGGAAT
GGAGTGGATGCACCTCCTACAACTTCGCACGACCCAAGCGTTGCCCGGGG
CATTCTCTAACATGGTGCTGCGCCCAACTCAGCATTACACCTGATACATG
TTTTGACTTTGAACCTCAGGTCATCACCGACCCCGAACTCTTGCGAACCT
CGATTGAATCAGGTCCTGCAGGAAAAAGCTGTGACTAAAGGAGGGGTCAA
CTACACATACTTGACCGTCAAGTACAACACTGTCACGAGATCAGGCTACG
ATGTGGAAAGAATATCATACATTGCGGCTACTGTGAAGCAGCGGAAGCTC
TTCACTCTGGTCGCGACTGTCTCGAGCGAGCGACGCAACAAAATGGACTT
GATTTTAAACTCCATTCAAGCGTCATTTCGAGTTGGAGATGTGGGCGTGG
TTGAGACTTCTTCGACTGACTTCAACACAAAATAGCTTCCATGTGTTCTG
ATATCACGCGTAAGAGTGAAAGCCTCGGAAAATCTACAGCTGGTAAAGTG
GTGGTGTAGTAGATCACGCACGGGTGTGTGACACTTTTATTTATCCGAAC
TACTTGCGCAGGAGAAAATAGTAGCTGTCGGAGCGACGACCACCGTGAAG
CAGTTGGGTTTGCCAATACGCCATGACTCTCGCGTAAAACCTCACCGGGG
CGGGTGCCCTCGGTTTGTATATAATGGTCGGAAACGTTGAGTTAGGTTTT
TTCGGGCTCTAAACAATGTACAATCTGTTGTTGATGATAGCTCAGCCTCT
GAGTGGATCACCTGAGACTCTTTTTCCCTCTTTTTTTGTTGCGGAGGTGG
TTTTTGTCTTTTTCTTTCCCATCCACCTTTTGTTTTCTTTCTGGACGTTC
GTTTTACTCGAAGAACATTCATTTGTCGAGCGGTTCACTATTTGTATTTT
TTATGTACCTACCTGTCTGTGTTGTGGCGGGCCGGCGTTCTTGTGATAGA
ACTGATTGGTATGTTCCGTGTCTTTGCCGTCGAAGAGTAGAGTTAGAGGA
GATACGACATAGAAGTCAGAACGCTTTTTTATTTTCTGTGGACGACGGCG
ACAACGAAACAACTTGCAAGATCATGTTACCTCTCGGGTACATGGTAATG
TTACACGTAATCGTGTACATAAGCCGGTCGCCCCGGTAGTCTGATTGATA
TCCTCGAAAAGCCTTCAAGTGGCCACGGTCAGGGGTTCGAATCCGGCGTA
AGCGAGCTTTTCTTCTGAGTTTCCCTCTCGCTTCCGTTCCTGGTCTGGGT
GGAAAGCGCTCCATGCAGTAGTTCGTGTGTACAGAGGGGAGAGAGAGCTG
CACTCTTCTCGCATTAAAAATCAAAGGCAAAGCACCGCAGGAGGGATGGG
TAGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11099:393..2099-

>mRNA_Ecto-sp9_F_contig11099.950.1 ID=mRNA_Ecto-sp9_F_contig11099.950.1|Name=mRNA_Ecto-sp9_F_contig11099.950.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1062bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11099:393..2099- (Ectocarpus species9 EcSCA_722f female)
ATGATCGCGGAAGATGGTGGTTTCACCTCTTCATACGTCAAAGTGGAGGA
TAATGGGCAAGGGACAGTGTGTGCGTACGCTTATCCGGTCGGGTGGGTGG
AAAAGAAGAAGGCGGATGGGTTTGCGACGGCTGCCAACTACCAAACAGGA
GATAGCTTGAGTTTAAACATGGGTACGCCAAGCAAAGCCAAGACGATAGG
AGATGTGGGTGCGCTCGCCATCGCAGCAGAAGCAACGCCGTCTGAAGGAG
CTGCAAAGATGATCGCGGAAGATGGTGGTTTCACCTCTTCATACGTCAAA
GTGGAGGATAATGGGCAAGGGACAGTGTGTGCGTACGCTTATCCGGTCGG
GTGGGTGGAAAAGAAGAAGGCGGATGGGTTTGCGACGGCTGCCAACTACC
AAACAGGAGATAGCTTGAGTTTAAACATGGGTACGCCAAGCAAAGCCAAG
ACGATAGGAGATGTGGGTGCGCTCGCCATCGCAGCAGAAGCAACGCCGTC
TGAAGGAGCTGCAAAGGTCCTGCAGGAAAAAGCTGTGACTAAAGGAGGGG
TCAACTACACATACTTGACCGTCAAGTACAACACTGTCACGAGATCAGGC
TACGATGTGGAAAGAATATCATACATTGCGGCTACTGTGAAGCAGCGGAA
GCTCTTCACTCTGGTCGCGACTGTCTCGAGCGAGCGACGCAACAAAATGG
ACTTGATTTTAAACTCCATTCAAGCGTCATTTCGAGTTGGAGATGTGGGC
GTGGTTGAGACTTCTTCGACTGACTTCAACACAAAATAGGTCCTGCAGGA
AAAAGCTGTGACTAAAGGAGGGGTCAACTACACATACTTGACCGTCAAGT
ACAACACTGTCACGAGATCAGGCTACGATGTGGAAAGAATATCATACATT
GCGGCTACTGTGAAGCAGCGGAAGCTCTTCACTCTGGTCGCGACTGTCTC
GAGCGAGCGACGCAACAAAATGGACTTGATTTTAAACTCCATTCAAGCGT
CATTTCGAGTTGGAGATGTGGGCGTGGTTGAGACTTCTTCGACTGACTTC
AACACAAAATAG
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