mRNA_Ecto-sp9_F_contig1109.946.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1109.946.1 vs.
Match: PWWP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA8_9PHAE) HSP 1 Score: 1253 bits (3241), Expect = 0.000e+0 Identity = 841/1129 (74.49%), Postives = 866/1129 (76.71%), Query Frame = 1
Query: 4 VAPLGNTTVTGRHSKDRHGWVREVATARDALALRRPAVQLEGALYACSRDMMENLAMDWSSMAVAEGEDVSWDSPYDWNFLKSQGRDRRKGKDREQRASLGEDGGAAPSATVGSGSAAIGGGGPTAAEVGASARAPSRGKRNVAEKRESGRELTSPAAAQAAAAIAVVSPAAAALTGRGRQEGEGTREGSQGASKMAREEVIEEARVFTAGDSAGAGANSLAELLVPGGKAPPEESSAGCLPSAGRVAFQDEDDAQKVTEKADSQPAAADTRATEATPATGDKQDADTSATTTARLGGLQASDGAQGGAYSTPLEGKVGVARPASSSQQATARDGGEEGLNANSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVGPAGVDDEKDRTRLKEGADDRTATDAGGSISHPPEAAGGGSAADNVASEASSGPMEVEGGGVELERNSGTMKTAAVEESREPAGMSDDGNGDKTPVLDGQTEATPAAGDDTGPNAAFPVEDAAGAAASTPADSGGNEGDGG------------------NPSKTAGVDWFEKTKPSGTRGDIDDGDDDAEVPESVKGMQEGGRRDPGAGEQQVEEDNAVATAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXKKTPTTMTKAEADDAGLTEGNEMDGMDEAAEDXXXXXXXXXXVEPEKRWEMEREGIALANLSAELQGALSTDPAFREAWRKEMLAARTLAGVATLVYSLLKSAAGVLPALQEQDMQEQALINQDLATNQALHVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQRSLLEARDRLVVFMNEHQQFRVNHRFCKPYVGTTKHDDVMRRASRNNRRMARAIKMATKGLRVAHERFGSDGDPNAPHNRPNFDTQDTQQXXXXXXXXXXXXXXAAGTRLTGSAXXXXXXXXXXXXXXXXXXTTHRSVPPGLAAQRGLALAXXXXXXXXXXXXAAG--GETVKVSRPRRTPKVPKYLTEGMVGDGGADAPVRSIAGKGKKRKDGRVGGSTGMWQARKSQKRGXXXXXSELEQHQPAAPAERQPSRKKMPAALAQAELASGSMNMVR 3330
VAPLGNTTVTGRHSKDRHGWVREVATARDALALRRPAVQLE AL RDMME+LA+DWSSMAVAEGEDVSWDSPYDW FLK QGRDRRKGKDREQRAS GEDG AA SATVGSG AA+GG GPTAA VGA+ARAPSRGKR VA+KRE GRELTSPAAAQA VSPAAAALTGRGRQEGE REG+QGASKMAREEV EEARVF AGD AGAGANSLAELLVP G+A PEESSAGCLPSA RVAF D DDA+KVTEKADSQP ADT A EAT TGDKQDA TS T TARLGGLQASD AQ AYSTPLEGKVGV RPASSS++ATARDGGE GLNA++ XXXXXXXXXXXXXXXXXX GV+GPAGVDDEKD TRLKE ADD TATDAGGSISHP EAAGGGSAA NVASEASSGPMEVEGGGVELE+ S TMK AAVEESRE AGMSDDGNGDKTPVLDGQTEATPAAGDDTGP+ AF ++ AAGAAA N SKTAGVD FEKTKPSGT+ D DDGDDDAEVPE V+GMQEGGRRDPGAGEQQVE DNAVATAAV KK TMTKAEAD AGLTEGN + XXXXVEPEKRWEMEREGIALANLSA LQGALSTDPAFREAWR+EMLAARTLAGVATLVYSLL SAAGVLPALQEQDMQEQALINQ ALHVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQRSLLEA DRLVVFMNE Q FRVNHRFCKPYVGTTKHD VMRRASRNNRRMARAIKMATKGLRVAHERFGSDGDPNAPHNRPNFDTQDTQ XXXXXXXXXXX AAG RLTGSA XXXXXXXXXXXXTTHR VPPG AAQRGLALAXXXXXXXXXXXXA G GETV VSRPRRTPK PKYL EGMVG+GGADAPVRSIAGKGK DGRVGGS+G+W+A KSQKRGXXXXX ERQPSRKKM ALAQAELASGSMNMVR
Sbjct: 8 VAPLGNTTVTGRHSKDRHGWVREVATARDALALRRPAVQLERAL----RDMMESLAIDWSSMAVAEGEDVSWDSPYDWTFLKLQGRDRRKGKDREQRASSGEDGRAALSATVGSGIAAVGGWGPTAAAVGAAARAPSRGKRKVAKKREGGRELTSPAAAQAXXXXXXVSPAAAALTGRGRQEGESIREGTQGASKMAREEVAEEARVFAAGDIAGAGANSLAELLVPVGEASPEESSAGCLPSAARVAFHDGDDAEKVTEKADSQPPTADTPANEATQVTGDKQDAATSTTNTARLGGLQASDSAQLSAYSTPLEGKVGVVRPASSSEKATARDGGE-GLNASNAXXXXXXXXXXXXXXXXXXDAEGSSVGTSDTSTATGRTVASEPKATTPAVATRASEEAKEVRALNKVKEEKAGKTDISGERMGGFRGG--GVIGPAGVDDEKDCTRLKEEADDGTATDAGGSISHPREAAGGGSAAGNVASEASSGPMEVEGGGVELEKGSATMKMAAVEESREQAGMSDDGNGDKTPVLDGQTEATPAAGDDTGPDDAFFLKGAAGAAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTSKTAGVDRFEKTKPSGTQDDSDDGDDDAEVPEIVEGMQEGGRRDPGAGEQQVEADNAVATAAVAAATVALSVAGDGST------------KKPTMTMTKAEADHAGLTEGNVSLKRVDLEPRYEEDEEXXXXVEPEKRWEMEREGIALANLSAGLQGALSTDPAFREAWRQEMLAARTLAGVATLVYSLLASAAGVLPALQEQDMQEQALINQ------ALHVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQRSLLEAGDRLVVFMNEQQHFRVNHRFCKPYVGTTKHDGVMRRASRNNRRMARAIKMATKGLRVAHERFGSDGDPNAPHNRPNFDTQDTQXXXXXXXXXXXXAL-AAGERLTGSATAAPPAXXXXXXXXXXXXTTHRLVPPGQAAQRGLALAXXXXXXXXXXXXAGGRRGETVMVSRPRRTPKPPKYLIEGMVGNGGADAPVRSIAGKGK---DGRVGGSSGVWRASKSQKRGXXXXXXXXXXXXXXXXXERQPSRKKMLTALAQAELASGSMNMVR 1107
BLAST of mRNA_Ecto-sp9_F_contig1109.946.1 vs.
Match: Nucleosome/chromatin (assembly factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK0_ECTSI) HSP 1 Score: 1105 bits (2857), Expect = 0.000e+0 Identity = 784/1112 (70.50%), Postives = 794/1112 (71.40%), Query Frame = 1
Query: 1 QVAPLGNTTVTGRHSKDRHGWVREVATARDALALRRPAVQLEGALYACSRDMMENLAMDWSSMAVAEGEDVSWDSPYDWNFLKSQGRDRRKGKDREQRASLGEDGGAAPSATVGSGSAAIGGGGPTAAEVGASARAPSRGKRNVAEKRESGRELTSPAAAQAAAAIAVVSPAAAALTGRGRQEGEGTREGSQGASKMAREEVIEEARVFTAGDSAGAGANSLAELLVPGGKAPPEESSAGCLPSAGRVAFQDEDDAQKVTEKADSQPAAADTRATEATPATGDKQDADTSATTTARLGGLQASDGAQGGAYSTPLEGKVGVARPASSSQQATARDGGEEGLNANSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVVGPAGVDDEKDRTRLKEGADDRTATDAGGSISHPPEAAGGGSAADNVASEASSGPMEVEGGGVELERNSGTMKTAAVEESRE--PAGMSDDGNGDKTPVLDGQTEATPAAGDDTGPNAAFPVEDAAGAAASTPADSGGNEGDGGNPSKTAGVDWFEKTKPSGTRGDIDDGDDDAEVPESVKGMQEGGRRDPGAGEQQVEEDNAVATAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXKKTPTTMTKAEADDAGLTEGNEMDGMDEAAEDXXXXXXXXXXVEPEKRWEMEREGIALANLSAELQGALSTDPAFREAWRKEMLAARTLAGVATLVYSLLKSAAGVLPALQEQDMQEQALINQDLATNQALHVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQRSLLEARDRLVVFMNEHQQFRVNHRFCKPYVGTTKHDDVMRRASRNNRRMARAIKMATKGLRVAHERFGSDGDPNAPHNRPNFDTQDTQQXXXXXXXXXXXXXXAAGTRLTGSAXXXXXXXXXXXXXXXXXXTTHRSVPPGLAAQRGLALAXXXXXXXXXXXXAAGGETVKVSRPRRTPKVPKYLTEGMVGDGGADAPVRSIAGKGKKRKDGRVGGSTGMWQARKSQKRGXXXXXSELEQHQPAAPAERQPSRKKMPAALAQAELASGSMNMVR 3330
QVAPLGNTTVTGRHSKDRHGWVREVATARD LALRRPAVQLE ALYACSRDMMENLAMDWSSMAVAEGEDVSWDSPYDW FLKSQGRDRRKGKDREQRASLGEDG AAPSATVGSGSAAIGGGGPTAAEVGASARAPSRGKRNVA+KRESGRELTSPAAAQA AAA GRGRQEGEGTREG+QGA K+AREEVIEEARVF AGDSAGAG NSLAELLVPGGKAPPEESSAGCLPSAGRV FQDEDDAQK T TPA +ASD A+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVDDEKDRTRLKEGADDRTATDAGGSISHPPEAAGGGSAADNVASEA+SGPMEVEGGGVELERNSGTMKTAAVE+SRE PAGMSDDGNGDKTPVLDGQTEATP AG DTGPNAAFPVEDAAGAAASTPADSGGNEGDGGNPSKTA G GD KKTPTTMTKAEADDAGLTEGNEMDGMDEAAE+XXXXXXXXX VEPEKRWEMEREGIALANLSAELQGALSTDPAFREAWRKEMLAARTLAGVATLVYSLL SAAGVLPALQEQDMQEQALINQDLATNQAL VRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQ MATKGLRVAHERFGSDGDPNAPHNRPNFDTQDTQ XXXXXXXXXXXX AAGTRLTGSAXXXXXXXXXXXXXXXX T+HRSVPPG AAQRGLALA XXXXXXXXXX AAGGET KVSRPRRTPKVPKYLTEGMVGDGGADAPVRSIAGKGKKRKDGRVGGSTGMWQARKSQKRGXXXXXSELEQHQPAAPAERQPSRKKMPAALAQAELASGSM+MVR
Sbjct: 920 QVAPLGNTTVTGRHSKDRHGWVREVATARDVLALRRPAVQLERALYACSRDMMENLAMDWSSMAVAEGEDVSWDSPYDWTFLKSQGRDRRKGKDREQRASLGEDGRAAPSATVGSGSAAIGGGGPTAAEVGASARAPSRGKRNVAKKRESGRELTSPAAAQAXXXXXXXXXXAAAFMGRGRQEGEGTREGAQGARKVAREEVIEEARVFAAGDSAGAGVNSLAELLVPGGKAPPEESSAGCLPSAGRVVFQDEDDAQKAT-----------------TPAVA-----------------TRASDEAK---------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDDEKDRTRLKEGADDRTATDAGGSISHPPEAAGGGSAADNVASEANSGPMEVEGGGVELERNSGTMKTAAVEDSREGEPAGMSDDGNGDKTPVLDGQTEATPDAGGDTGPNAAFPVEDAAGAAASTPADSGGNEGDGGNPSKTAVA--------LGVGGD-------------------------------------------------------------------GSTKKTPTTMTKAEADDAGLTEGNEMDGMDEAAEEXXXXXXXXX-VEPEKRWEMEREGIALANLSAELQGALSTDPAFREAWRKEMLAARTLAGVATLVYSLLTSAAGVLPALQEQDMQEQALINQDLATNQALRVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQ-------------------------------------------------------MATKGLRVAHERFGSDGDPNAPHNRPNFDTQDTQXXXXXXXXXXXXX--AAGTRLTGSAXXXXXXXXXXXXXXXXPATSHRSVPPGQAAQRGLALAAXXXXXXXXXX-AAGGETGKVSRPRRTPKVPKYLTEGMVGDGGADAPVRSIAGKGKKRKDGRVGGSTGMWQARKSQKRGXXXXXSELEQHQPAAPAERQPSRKKMPAALAQAELASGSMSMVR 1764
BLAST of mRNA_Ecto-sp9_F_contig1109.946.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI97_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.860e-8 Identity = 41/134 (30.60%), Postives = 68/134 (50.75%), Query Frame = 1
Query: 2332 LPALQEQDMQEQALINQ-------DLATNQALHVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQRSLLEARDRLVVFMNEHQQFRVNHRFCKPYVGTTKHDDVMRRASRNNRRMARAIKMATKGLRV--AHE 2706
LP L+EQ A +N A + ++ V TSE+VWAR+ G+PWWP+ V +P F +++ E + LVVF+ E Q+ + P+ G D+ + +R + R++++A R+ AHE
Sbjct: 3 LPDLEEQAANALAFLNDANAYGEDGRAIDPSVRVSSEPTSEMVWARVKGYPWWPSRVHRPRDPKFSQAMSERNEILVVFVGEAAQYHLPLEDTAPFTG----DEQDSHMPKKDRHIQRSLRLAIHTTRMIQAHE 132
BLAST of mRNA_Ecto-sp9_F_contig1109.946.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLH6_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.260e-5 Identity = 42/137 (30.66%), Postives = 68/137 (49.64%), Query Frame = 1
Query: 2230 PAFREAWR---KEMLAARTLAGVATLVYSLLKSAAGVLPALQEQDMQEQALINQD-------LATNQALHVRCSS--TSEIVWARLHGFPWWPALVVKPEGVGFQRSLLEARDRLVVFMNEHQQFRVNHRFCKPYVG 2604
P R WR KE + +T A A L+Y+L +A LP ++ Q + L+N + + + +A V S T ++WAR+ GFPWWPA + F+R L E + L+VF+ E ++ + P++G
Sbjct: 79 PETRNGWRLKLKETI--KTEASYALLLYTLTDTARRRLPDIEHQANEATQLLNGNAPRAEGPMVSTRAAAVMIPSIGTQTMLWARVSGFPWWPARLHTALNPEFERVLKERSEVLIVFVGEAHKYHLPETSVAPFLG 213 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1109.946.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1109.946.1 >prot_Ecto-sp9_F_contig1109.946.1 ID=prot_Ecto-sp9_F_contig1109.946.1|Name=mRNA_Ecto-sp9_F_contig1109.946.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1111bp QVAPLGNTTVTGRHSKDRHGWVREVATARDALALRRPAVQLEGALYACSRback to top mRNA from alignment at Ecto-sp9_F_contig1109:18017..26095- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1109.946.1 ID=mRNA_Ecto-sp9_F_contig1109.946.1|Name=mRNA_Ecto-sp9_F_contig1109.946.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8079bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1109:18017..26095- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1109:18017..26095- >mRNA_Ecto-sp9_F_contig1109.946.1 ID=mRNA_Ecto-sp9_F_contig1109.946.1|Name=mRNA_Ecto-sp9_F_contig1109.946.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=6666bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1109:18017..26095- (Ectocarpus species9 EcSCA_722f female)back to top |