mRNA_Ecto-sp9_F_contig1109.943.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1109.943.1
Unique NamemRNA_Ecto-sp9_F_contig1109.943.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1109.943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI)

HSP 1 Score: 469 bits (1207), Expect = 9.050e-167
Identity = 229/248 (92.34%), Postives = 236/248 (95.16%), Query Frame = 1 
Query:    1 MAAPMDSAEGGSDYYDSGDEHGNDLGDVMKENPSLLAMFSMAYLVVWVMGLAFSSTCFNRSRFYRGGLCMKGHNPISRVIFVPFLVLVVVPAFGIFTAPVMTCWLLCRLCFLLGGVDCNFPAGWLMRPPQRRHHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQPQQDDSHPWLCKRRLRDLCSITRVMTADDPLATAGNEPSVGAQGIADIELYERGTYDQEFAQAVVSVAGIMEEGIFRGIILYL 744
            MAAPMDSAEGGSDYYDSGDE GNDLGDVMKENPSL AMF MAYLVVWV GLAFSSTCFNRSRFYRGGLCM+GHNPISR+IFVPFLVLVVVPAFGIFTAPVMTCW LCR+CFLLG VDC+FPAGWLMRPPQRR HLSNFPSGRERRWKRRGWLVMLRARHQIFLAQ QQ+DS PWLCKR+LRDLC ITRVMTADDPLATAGNEPSVGAQGIADIEL E+GTYDQEFAQAVVSVAGIMEEGIFRGI LYL
Sbjct:    1 MAAPMDSAEGGSDYYDSGDEQGNDLGDVMKENPSLWAMFIMAYLVVWVQGLAFSSTCFNRSRFYRGGLCMQGHNPISRMIFVPFLVLVVVPAFGIFTAPVMTCWSLCRVCFLLGRVDCDFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLCKRKLRDLCGITRVMTADDPLATAGNEPSVGAQGIADIELNEQGTYDQEFAQAVVSVAGIMEEGIFRGITLYL 248
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BLAST of mRNA_Ecto-sp9_F_contig1109.943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF96_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 2.260e-58
Identity = 118/248 (47.58%), Postives = 125/248 (50.40%), Query Frame = 1 
Query:    1 MAAPMDSAEGGSDYYDSGDEHGNDLGDVMKENPSLLAMFSMAYLVVWVMGLAFSSTCFNRSRFYRGGLCMKGHNPISRVIFVPFLVLVVVPAFGIFTAPVMTCWLLCRLCFLLGGVDCNFPAGWLMRPPQRRHHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQPQQDDSHPWLCKRRLRDLCSITRVMTADDPLATAGNEPSVGAQGIADIELYERGTYDQEFAQAVVSVAGIMEEGIFRGIILYL 744
            MAAP DSAEGGSDYYDSGDEHGNDLGDVMKEN S                      C NRSRFYRGGLCMKGHNPISRVI +                                                                              + LA         WLC+R+LRD C ITRVMTADDPL  AGNEPSVGAQGIA IELYE+GTYDQEFAQAV+SVA IMEEG+F  I LYL
Sbjct:    1 MAAPTDSAEGGSDYYDSGDEHGNDLGDVMKENRS--------------------DKCLNRSRFYRGGLCMKGHNPISRVIMI------------------------------------------------------------------------------LSLA---------WLCERKLRDPCGITRVMTADDPLGIAGNEPSVGAQGIAGIELYEQGTYDQEFAQAVISVAAIMEEGVFCEITLYL 141
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BLAST of mRNA_Ecto-sp9_F_contig1109.943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.820e-6
Identity = 43/114 (37.72%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:  403 LSNFPSGRERRWKRRGWLVMLRARHQIFLAQPQQDDSHPWLCKRRLRDLCSITRVMTADDPLATAGNEPSVGAQGIADIELYERGTYDQEFAQAVVSVAGIMEEGIFRGIILYL 744
            L  FP   +RRW   GWL+M+RARHQ FLA+P+      W    RLR L                 NE ++  +   ++EL E G     F +AV +V  I EEG+FR II +L
Sbjct:  204 LRTFPG--QRRWHAGGWLIMIRARHQRFLARPKG-----WPI--RLRKLERF--------------NEANIVHKIPPELELLEAGRSRMNFVRAVTAVVEINEEGLFRHIISFL 294
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1109.943.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized9.050e-16792.34protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.260e-5847.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.820e-637.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1109contigEcto-sp9_F_contig1109:2554..4532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_000100.1
Exons5
Model size747
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1109.943.1prot_Ecto-sp9_F_contig1109.943.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1109 2554..4532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928348.8693721-CDS-Ecto-sp9_F_contig1109:2553..29361622928348.8693721-CDS-Ecto-sp9_F_contig1109:2553..2936Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 2554..2936 -
1692277841.0302076-CDS-Ecto-sp9_F_contig1109:2553..29361692277841.0302076-CDS-Ecto-sp9_F_contig1109:2553..2936Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 2554..2936 -
1622928348.8840544-CDS-Ecto-sp9_F_contig1109:3098..32161622928348.8840544-CDS-Ecto-sp9_F_contig1109:3098..3216Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 3099..3216 -
1692277841.054545-CDS-Ecto-sp9_F_contig1109:3098..32161692277841.054545-CDS-Ecto-sp9_F_contig1109:3098..3216Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 3099..3216 -
1622928348.8962517-CDS-Ecto-sp9_F_contig1109:3521..36001622928348.8962517-CDS-Ecto-sp9_F_contig1109:3521..3600Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 3522..3600 -
1692277841.0652168-CDS-Ecto-sp9_F_contig1109:3521..36001692277841.0652168-CDS-Ecto-sp9_F_contig1109:3521..3600Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 3522..3600 -
1622928348.9080822-CDS-Ecto-sp9_F_contig1109:3980..40391622928348.9080822-CDS-Ecto-sp9_F_contig1109:3980..4039Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 3981..4039 -
1692277841.074958-CDS-Ecto-sp9_F_contig1109:3980..40391692277841.074958-CDS-Ecto-sp9_F_contig1109:3980..4039Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 3981..4039 -
1622928348.9234478-CDS-Ecto-sp9_F_contig1109:4424..45321622928348.9234478-CDS-Ecto-sp9_F_contig1109:4424..4532Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 4425..4532 -
1692277841.083749-CDS-Ecto-sp9_F_contig1109:4424..45321692277841.083749-CDS-Ecto-sp9_F_contig1109:4424..4532Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 4425..4532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1109.943.1

>prot_Ecto-sp9_F_contig1109.943.1 ID=prot_Ecto-sp9_F_contig1109.943.1|Name=mRNA_Ecto-sp9_F_contig1109.943.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=249bp
MAAPMDSAEGGSDYYDSGDEHGNDLGDVMKENPSLLAMFSMAYLVVWVMG
LAFSSTCFNRSRFYRGGLCMKGHNPISRVIFVPFLVLVVVPAFGIFTAPV
MTCWLLCRLCFLLGGVDCNFPAGWLMRPPQRRHHLSNFPSGRERRWKRRG
WLVMLRARHQIFLAQPQQDDSHPWLCKRRLRDLCSITRVMTADDPLATAG
NEPSVGAQGIADIELYERGTYDQEFAQAVVSVAGIMEEGIFRGIILYL*
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mRNA from alignment at Ecto-sp9_F_contig1109:2554..4532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1109.943.1 ID=mRNA_Ecto-sp9_F_contig1109.943.1|Name=mRNA_Ecto-sp9_F_contig1109.943.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1979bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1109:2554..4532- (Ectocarpus species9 EcSCA_722f female)
ATGGCAGCACCAATGGACTCTGCGGAGGGGGGTAGCGACTACTATGATTC
TGGAGACGAGCACGGAAACGACCTCGGCGACGTGATGAAAGAAAATCCTT
CTCTATTGGTATGTCGTAGCATTTTCATAGCAAACCGGCCGTTTTTGTAT
ATGCTCCTGTGTACGGAGGTGGCGAGCTGAGCTCTGACCTTCCTTGCTTG
TTGCCATGCTGTGAAACATATCGCAACTGGACTTTTGGCAATCTGCAAAC
AGTTTGTAAATGCTCTCACATGGTAAGACTGTTGGTTACAGTAGATCATT
TTTTAAACCTCGAAGGACAAGGAAATTCGGGTTGCCGGTCCTTTCCGATT
TCGCGTGTGTGAATGCCCAGCTATAAACCGCCTTCTGTCGCTACCGCAAC
CATGAGCGAGGAGCAACTGTTGGATGTCCCGTTGTGGGTCAACGACACGT
GAGGTTGTTTCCCTTTTCCTGCGTTTGCTTGATGCTGTCACAGGCCATGT
TCTCCATGGCATATCTGGTGGTGTGGGTTATGGGCTTGGCGTTTTCGTCC
ACGTGAGTGCTACACTAACAACGCCAGTGTATTCTGTCGCTCCTGGTGAA
ACGTTTCCGGAAGTTGTGGGGAGAGGCAGAGAAATACAAGCTGGCTGACC
GGAGCTGAGTGTATTGTCGATTGAGCTTTCTGCAGACACATCCAAGGCAC
GACGGCGGGAGTATTGCGAGCGATGGTTGTTGACAATGCCAGGAACGAAC
TGCCAGCACGCGATACAGTGAGTGAGTTGGGTGAGCTTTTTCGTCGTAGG
ATCCGGTCGTTTTGTTCTTCTCTTGTCTGAACCCAAGGGCAGCGCCAGGG
ATTGATATATGCATCACGACGACTGTCGTCGCAGAAGTTCCCACTGAAGT
CGTCTCGAATGATGCCTCTGCCACCGTCCCAGGTGCTTCAACCGTTCCAG
GTTCTACCGGGGGGGCTTGTGCATGAAGGGCCACAACCCCATCTCGAGGG
TGATATTCGTGGTGGGTCTTAGGCGGCGACCGTAGAGGACACAGAAGCGC
CGTCGTGAGATGATGATATCAACGAATTCTTGAAGCGCCGTCGTGATGAT
GATTACGTTTTGATAGGGACGGGTTGCCCCAAACCCATCCAGTACCCCAT
CGCACGGCACCCTTTCCTGCGGTGCATAACTTCCGGCGCGGCGTCCGTTA
CGAATAATTGCTTGTAAGGTCGCACTGCGGCTCCTCCAAAGCTTCCTTCC
TATGCTTAACCCGCTGTGCCCTTTTTGTGCGTCTTACAGCATACCGGTAC
GTCGTTTGTTCCCCAGCCGTTCCTCGTACTTGTTGTCGTTCCAGCATTCG
GGATCTTCACGGCGCCAGTCATGACATGCTGGTTACTCTGCCGACTATGT
TTCCTTCTCGGAGGAGTTGACTGCAACTTCCCTGGTAAGCTGTCAAGTAC
TTCGTGGCTTCGTAACTTTCTCACACCCTCACGGAACGGGGACGTTTCGT
AATCATGGACTAGAATGAAGGTCGAAGAGTGCGACAAAAGCATCCTTCTT
TCTCTACCCGAGCCCGCTCCCCACCCTCCGTCCGCACTCTGTACAGCCGG
ATGGCTCATGAGGCCCCCCCAGCGACGGCACCATCTCTCCAACTTTCCGA
GCGGGAGAGAACGGCGCTGGAAGCGTCGGGGCTGGCTCGTAATGCTGCGA
GCTCGTCACCAAATCTTCTTGGCACAGCCACAGCAGGATGATTCTCATCC
TTGGCTATGCAAGCGGAGGTTAAGAGATCTCTGCAGTATCACGCGGGTGA
TGACGGCGGATGATCCTCTGGCAACCGCCGGCAACGAGCCTTCCGTAGGC
GCACAAGGAATTGCTGACATTGAATTGTACGAGCGAGGCACCTATGACCA
GGAGTTTGCTCAGGCTGTGGTTTCGGTCGCGGGTATCATGGAGGAAGGAA
TTTTTCGCGGGATTATCTTGTATCTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1109:2554..4532-

>mRNA_Ecto-sp9_F_contig1109.943.1 ID=mRNA_Ecto-sp9_F_contig1109.943.1|Name=mRNA_Ecto-sp9_F_contig1109.943.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1494bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1109:2554..4532- (Ectocarpus species9 EcSCA_722f female)
ATGGCAGCACCAATGGACTCTGCGGAGGGGGGTAGCGACTACTATGATTC
TGGAGACGAGCACGGAAACGACCTCGGCGACGTGATGAAAGAAAATCCTT
CTCTATTGATGGCAGCACCAATGGACTCTGCGGAGGGGGGTAGCGACTAC
TATGATTCTGGAGACGAGCACGGAAACGACCTCGGCGACGTGATGAAAGA
AAATCCTTCTCTATTGGCCATGTTCTCCATGGCATATCTGGTGGTGTGGG
TTATGGGCTTGGCGTTTTCGTCCACGCCATGTTCTCCATGGCATATCTGG
TGGTGTGGGTTATGGGCTTGGCGTTTTCGTCCACGTGCTTCAACCGTTCC
AGGTTCTACCGGGGGGGCTTGTGCATGAAGGGCCACAACCCCATCTCGAG
GGTGATATTCGTGGTGCTTCAACCGTTCCAGGTTCTACCGGGGGGGCTTG
TGCATGAAGGGCCACAACCCCATCTCGAGGGTGATATTCGTGCCGTTCCT
CGTACTTGTTGTCGTTCCAGCATTCGGGATCTTCACGGCGCCAGTCATGA
CATGCTGGTTACTCTGCCGACTATGTTTCCTTCTCGGAGGAGTTGACTGC
AACTTCCCTGCCGTTCCTCGTACTTGTTGTCGTTCCAGCATTCGGGATCT
TCACGGCGCCAGTCATGACATGCTGGTTACTCTGCCGACTATGTTTCCTT
CTCGGAGGAGTTGACTGCAACTTCCCTGCCGGATGGCTCATGAGGCCCCC
CCAGCGACGGCACCATCTCTCCAACTTTCCGAGCGGGAGAGAACGGCGCT
GGAAGCGTCGGGGCTGGCTCGTAATGCTGCGAGCTCGTCACCAAATCTTC
TTGGCACAGCCACAGCAGGATGATTCTCATCCTTGGCTATGCAAGCGGAG
GTTAAGAGATCTCTGCAGTATCACGCGGGTGATGACGGCGGATGATCCTC
TGGCAACCGCCGGCAACGAGCCTTCCGTAGGCGCACAAGGAATTGCTGAC
ATTGAATTGTACGAGCGAGGCACCTATGACCAGGAGTTTGCTCAGGCTGT
GGTTTCGGTCGCGGGTATCATGGAGGAAGGAATTTTTCGCGGGATTATCT
TGTATCTCTAGCCGGATGGCTCATGAGGCCCCCCCAGCGACGGCACCATC
TCTCCAACTTTCCGAGCGGGAGAGAACGGCGCTGGAAGCGTCGGGGCTGG
CTCGTAATGCTGCGAGCTCGTCACCAAATCTTCTTGGCACAGCCACAGCA
GGATGATTCTCATCCTTGGCTATGCAAGCGGAGGTTAAGAGATCTCTGCA
GTATCACGCGGGTGATGACGGCGGATGATCCTCTGGCAACCGCCGGCAAC
GAGCCTTCCGTAGGCGCACAAGGAATTGCTGACATTGAATTGTACGAGCG
AGGCACCTATGACCAGGAGTTTGCTCAGGCTGTGGTTTCGGTCGCGGGTA
TCATGGAGGAAGGAATTTTTCGCGGGATTATCTTGTATCTCTAG
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