prot_Ecto-sp9_F_contig1109.943.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig1109.943.1
Unique Name	prot_Ecto-sp9_F_contig1109.943.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	249

Homology

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BLAST of mRNA_Ecto-sp9_F_contig1109.943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI)

HSP 1 Score: 469 bits (1207), Expect = 9.050e-167
Identity = 229/248 (92.34%), Postives = 236/248 (95.16%), Query Frame = 0

Query:    1 MAAPMDSAEGGSDYYDSGDEHGNDLGDVMKENPSLLAMFSMAYLVVWVMGLAFSSTCFNRSRFYRGGLCMKGHNPISRVIFVPFLVLVVVPAFGIFTAPVMTCWLLCRLCFLLGGVDCNFPAGWLMRPPQRRHHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQPQQDDSHPWLCKRRLRDLCSITRVMTADDPLATAGNEPSVGAQGIADIELYERGTYDQEFAQAVVSVAGIMEEGIFRGIILYL 248
            MAAPMDSAEGGSDYYDSGDE GNDLGDVMKENPSL AMF MAYLVVWV GLAFSSTCFNRSRFYRGGLCM+GHNPISR+IFVPFLVLVVVPAFGIFTAPVMTCW LCR+CFLLG VDC+FPAGWLMRPPQRR HLSNFPSGRERRWKRRGWLVMLRARHQIFLAQ QQ+DS PWLCKR+LRDLC ITRVMTADDPLATAGNEPSVGAQGIADIEL E+GTYDQEFAQAVVSVAGIMEEGIFRGI LYL
Sbjct:    1 MAAPMDSAEGGSDYYDSGDEQGNDLGDVMKENPSLWAMFIMAYLVVWVQGLAFSSTCFNRSRFYRGGLCMQGHNPISRMIFVPFLVLVVVPAFGIFTAPVMTCWSLCRVCFLLGRVDCDFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLCKRKLRDLCGITRVMTADDPLATAGNEPSVGAQGIADIELNEQGTYDQEFAQAVVSVAGIMEEGIFRGITLYL 248

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1109.943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF96_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 2.260e-58
Identity = 118/248 (47.58%), Postives = 125/248 (50.40%), Query Frame = 0

Query:    1 MAAPMDSAEGGSDYYDSGDEHGNDLGDVMKENPSLLAMFSMAYLVVWVMGLAFSSTCFNRSRFYRGGLCMKGHNPISRVIFVPFLVLVVVPAFGIFTAPVMTCWLLCRLCFLLGGVDCNFPAGWLMRPPQRRHHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQPQQDDSHPWLCKRRLRDLCSITRVMTADDPLATAGNEPSVGAQGIADIELYERGTYDQEFAQAVVSVAGIMEEGIFRGIILYL 248
            MAAP DSAEGGSDYYDSGDEHGNDLGDVMKEN S                      C NRSRFYRGGLCMKGHNPISRVI +                                                                              + LA         WLC+R+LRD C ITRVMTADDPL  AGNEPSVGAQGIA IELYE+GTYDQEFAQAV+SVA IMEEG+F  I LYL
Sbjct:    1 MAAPTDSAEGGSDYYDSGDEHGNDLGDVMKENRS--------------------DKCLNRSRFYRGGLCMKGHNPISRVIMI------------------------------------------------------------------------------LSLA---------WLCERKLRDPCGITRVMTADDPLGIAGNEPSVGAQGIAGIELYEQGTYDQEFAQAVISVAAIMEEGVFCEITLYL 141

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1109.943.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.820e-6
Identity = 43/114 (37.72%), Postives = 57/114 (50.00%), Query Frame = 0

Query:  135 LSNFPSGRERRWKRRGWLVMLRARHQIFLAQPQQDDSHPWLCKRRLRDLCSITRVMTADDPLATAGNEPSVGAQGIADIELYERGTYDQEFAQAVVSVAGIMEEGIFRGIILYL 248
            L  FP   +RRW   GWL+M+RARHQ FLA+P+      W    RLR L                 NE ++  +   ++EL E G     F +AV +V  I EEG+FR II +L
Sbjct:  204 LRTFPG--QRRWHAGGWLIMIRARHQRFLARPKG-----WPI--RLRKLERF--------------NEANIVHKIPPELELLEAGRSRMNFVRAVTAVVEINEEGLFRHIISFL 294

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig1109.943.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig1109.943.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
Uncharacterized	9.050e-167	92.34	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	2.260e-58	47.58	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.820e-6	37.72	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..34
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 59..78
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..58
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 102..248
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 79..101
None	No IPR available	TMHMM	TMhelix		coord: 79..101
None	No IPR available	TMHMM	TMhelix		coord: 36..58

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig1109	contig	Ecto-sp9_F_contig1109:2554..4532 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig1109.943.1	mRNA_Ecto-sp9_F_contig1109.943.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig1109 2554..4532 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig1109.943.1 ID=prot_Ecto-sp9_F_contig1109.943.1|Name=mRNA_Ecto-sp9_F_contig1109.943.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=249bp
MAAPMDSAEGGSDYYDSGDEHGNDLGDVMKENPSLLAMFSMAYLVVWVMG
LAFSSTCFNRSRFYRGGLCMKGHNPISRVIFVPFLVLVVVPAFGIFTAPV
MTCWLLCRLCFLLGGVDCNFPAGWLMRPPQRRHHLSNFPSGRERRWKRRG
WLVMLRARHQIFLAQPQQDDSHPWLCKRRLRDLCSITRVMTADDPLATAG
NEPSVGAQGIADIELYERGTYDQEFAQAVVSVAGIMEEGIFRGIILYL*