mRNA_Ecto-sp9_F_contig11004.891.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11004.891.1
Unique NamemRNA_Ecto-sp9_F_contig11004.891.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11004.891.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ1_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.410e-58
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:   31 QVEEHPVYDLPKEWKALVSTLCLRTNFEPAELADLFQRFRQLAGTKEYLTAGEFRRTVRRNFGIMNEEWVKKYFKAFDRNHSGTIDFHEYVMGFA 315
            QVEEHPVYDLPKEWK LVSTLCLRTNFEPAELADLFQRFRQLAGTKEYLTAGEFRRTVRRNFGIMNEEWVKKYFKAFDRNHSGTIDF EYVMGFA
Sbjct:   11 QVEEHPVYDLPKEWKTLVSTLCLRTNFEPAELADLFQRFRQLAGTKEYLTAGEFRRTVRRNFGIMNEEWVKKYFKAFDRNHSGTIDFQEYVMGFA 105
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BLAST of mRNA_Ecto-sp9_F_contig11004.891.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K900_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.320e-57
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:    1 VADVVYGALGQVEEHPVYDLPKEWKALVSTLCLRTNFEPAELADLFQRFRQLAGTKEYLTAGEFRRTVRRNFGIMNEEWVKKYFKAFDRNH 273
            V+DVVYGALGQ EEHPVYDLPKEWK LVSTLCLRTNFEPAELADLFQRFRQLAGTKEYLTAGEFRRTVRRNFGIMNEEWVKKYFKAFDRNH
Sbjct:  121 VSDVVYGALGQAEEHPVYDLPKEWKTLVSTLCLRTNFEPAELADLFQRFRQLAGTKEYLTAGEFRRTVRRNFGIMNEEWVKKYFKAFDRNH 211
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BLAST of mRNA_Ecto-sp9_F_contig11004.891.1 vs.
Match: ATP-NAD (kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J6_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.280e-30
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1 
Query:   67 EWKALVSTLCLRTNFEPAELADLFQRFRQLAGTKEYLTAGEFRRTVRRNFGIMNEEWVKKYFKAFDRNHSGTIDFHEYVMGFA 315
            +W  +   L LRTNF P EL DL+Q FR++AG+KEYL+  EFRRT++RNFGIM EEW  KYF+AFDRN SGTIDF EYVMGFA
Sbjct:   70 DWAQITKALKLRTNFTPEELEDLWQSFREIAGSKEYLSRDEFRRTIKRNFGIMKEEWATKYFRAFDRNDSGTIDFPEYVMGFA 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11004.891.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
EF-hand2.410e-5897.89domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.320e-5796.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
ATP-NAD1.280e-3067.47kinase-like domain-containing protein n=1 Tax=Trib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11004contigEcto-sp9_F_contig11004:1324..3278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.1
Seed ortholog evalue8.5e-48
Seed eggNOG ortholog2880.D7FLZ1
KEGG rclassRC00002,RC00078
KEGG koko:K00858
KEGG ReactionR00104
KEGG Pathwayko00760,ko01100,map00760,map01100
EggNOG free text desc.NADP biosynthetic process
EggNOG OGsCOG0061@1,KOG2178@2759
EC2.7.1.23
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATP-NAD kinase, PpnK-type, all-beta
Ec32 orthologEc-22_000250.1
Exons3
Model size319
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11004.891.1prot_Ecto-sp9_F_contig11004.891.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11004 1326..3278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928335.7612476-CDS-Ecto-sp9_F_contig11004:1325..13651622928335.7612476-CDS-Ecto-sp9_F_contig11004:1325..1365Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11004 1326..1365 -
1692277838.0947855-CDS-Ecto-sp9_F_contig11004:1325..13651692277838.0947855-CDS-Ecto-sp9_F_contig11004:1325..1365Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11004 1326..1365 -
1622928335.8964732-CDS-Ecto-sp9_F_contig11004:2384..24991622928335.8964732-CDS-Ecto-sp9_F_contig11004:2384..2499Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11004 2385..2499 -
1692277838.1065767-CDS-Ecto-sp9_F_contig11004:2384..24991692277838.1065767-CDS-Ecto-sp9_F_contig11004:2384..2499Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11004 2385..2499 -
1622928335.9073539-CDS-Ecto-sp9_F_contig11004:3118..32781622928335.9073539-CDS-Ecto-sp9_F_contig11004:3118..3278Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11004 3119..3278 -
1692277838.1163588-CDS-Ecto-sp9_F_contig11004:3118..32781692277838.1163588-CDS-Ecto-sp9_F_contig11004:3118..3278Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11004 3119..3278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11004.891.1

>prot_Ecto-sp9_F_contig11004.891.1 ID=prot_Ecto-sp9_F_contig11004.891.1|Name=mRNA_Ecto-sp9_F_contig11004.891.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=105bp
VADVVYGALGQVEEHPVYDLPKEWKALVSTLCLRTNFEPAELADLFQRFR
QLAGTKEYLTAGEFRRTVRRNFGIMNEEWVKKYFKAFDRNHSGTIDFHEY
VMGFA
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mRNA from alignment at Ecto-sp9_F_contig11004:1324..3278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11004.891.1 ID=mRNA_Ecto-sp9_F_contig11004.891.1|Name=mRNA_Ecto-sp9_F_contig11004.891.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1955bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11004:1324..3278- (Ectocarpus species9 EcSCA_722f female)
GTGGCGGATGTTGTTTATGGCGCGCTCGGGCAGGTGGAGGAGCATCCGGT
GTACGACCTCCCGAAGGAGTGGAAGGCGCTGGTGTCGACGCTCTGCCTCA
GGACGAACTTCGAGCCCGCGGAGCTGGCGGACCTGTTCCAGAGGTTTAGG
CAGCTGGCGGGTGAGAGAAGAGAGGGACATCCTTCTCTTGTTGTTTTGGA
CCCGTTGGAAGTGGACATCAGAGTTTGAGACTTTTATGGCTCTGTTTGGA
AATATGGTGGCTATTCGGATGCAAAGGCGATTACCCCAAAGGGTCCCTGT
GTCCAAACAGCGCGTTTCTCGCACCGCATGGCACAGCAGTTCTGAGAGTA
TCCTCACTGCGAGGAATTGCGCTGCTGCTGCTGGGCTGAAGAGCTGAATT
ACCCCCGTGGTGTACATCCTGTACGGTGGTAGTGGATCCCAGGCGGTACT
ATAGTACACAACTGCCGCTTGTCCTGCGACCATCCAAGTATTAATTATTC
TATCACCGCAACCCTAGTTTTTTGCTACAGCTACTGAGCATAGACGAAGC
GTGTTGCTCGGATAGTGTGGAGTAGAGGCCGCCACCAAAGCCGTACCACG
TATATAAGAATCACCACGAAGCACGCGTATGGTCGCTGCGTTTGCCGCTG
GTAGTCTTGGGTGGGTCGGTCGTTACGTTGCGGTGTTAGATATAGAGTCG
AGGAGGGATCTTTGAGCGCGAACAAGCTATTGACAACACGCGAAACGGAA
CAATCATGGTGTTGCCGAACAACGAACAGGAACAAAGGAGTACCTCACCG
CGGGAGAGTTCCGCCGCACGGTGCGGCGTAACTTCGGCATCATGAACGAG
GAGTGGGTCAAGAAATATTTCAAGGCGTTCGATCGGAATCACAGGCAAGC
TTCGATGCTGCGAGAGATGGATGGATAATAGTCTGCACTTTCTTTTTTTT
GGTCTCGAGACTGACGCCGCATCTACAGCGTGAGGTACAAAGATCACGAG
CACTGCTCTGTAAATGTTTATCCGATCCTTGGGATAAATTAATACTTAAC
ATCAATTCAGTGCTAGTCTACACCCGGACGCATATGTGTGGAAGAGATGA
AATGTTTGTTGTGTTATTGTTTGAAAACTACTAAACGATGTGGTATGCTT
GCATCCGAATGGTCCCTAATAAGCATGTGGGTATATTTTTTTCAAGTTGT
GACATTTTCCGGACAATATGCGGCAACATGTTGTTCCTGCATCGACAGCG
CAAAACCTCGGATTTTGACCTCTCTTGGTGGCGTGTTTTCCACGTTTCAT
CGACCATGTCCCTTGATGTAGCCGCTACGCATGCCGGTGTGATGGACTTG
TGCCTCTGACTCACTGACGAATCCCCGATGTGATGATAAGACAAGAGACA
CAAGCTCCGTCCCGGCTCTGTCGATACACCAGGGTTTTTAGCCTCAACTA
TAACCCTCCGGCCTCTCGCCGTAAAAGCTGGTACTGCGTTACGGTAGGGA
AACCCACACGTTCTCTCGGGTCACACCGTAGAGTATGCTCCAATTGTGTC
GTTCTGGTGACAGTTGAGTATGCGGTGTGTTTTTTCGCCTCGTTTCTTTC
GAGTTGCTAAAGACACAAGGGCCACTGGTACGCAGACACTACCACGGTGT
AATGCAAGCTGAGCTTGACGCGGTCGTGTATACCTCTCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCGCCCGCTCCCCCCCACC
CCCCTCCTCCCGCGTTCCACCNNNNNNNNNNTTGCCAAAAACCCAAGGGG
CCCCCGGACGCGCCCCCCCCCCCCGTGTCATGCACGCCGGGCTTGCCCCG
GGGGTGTTTCCCCCCCCCCCCCCCCCCCCCCCCGTCCCCGGGTTCATGCT
TGCTGTGCTGCAGCGGTACCATCGATTTCCATGAGTACGTCATGGGATTC
GCCGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11004:1324..3278-

>mRNA_Ecto-sp9_F_contig11004.891.1 ID=mRNA_Ecto-sp9_F_contig11004.891.1|Name=mRNA_Ecto-sp9_F_contig11004.891.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11004:1324..3278- (Ectocarpus species9 EcSCA_722f female)
GTGGCGGATGTTGTTTATGGCGCGCTCGGGCAGGTGGAGGAGCATCCGGT
GTACGACCTCCCGAAGGAGTGGAAGGCGCTGGTGTCGACGCTCTGCCTCA
GGACGAACTTCGAGCCCGCGGAGCTGGCGGACCTGTTCCAGAGGTTTAGG
CAGCTGGCGGGTGGCGGATGTTGTTTATGGCGCGCTCGGGCAGGTGGAGG
AGCATCCGGTGTACGACCTCCCGAAGGAGTGGAAGGCGCTGGTGTCGACG
CTCTGCCTCAGGACGAACTTCGAGCCCGCGGAGCTGGCGGACCTGTTCCA
GAGGTTTAGGCAGCTGGCGGGAACAAAGGAGTACCTCACCGCGGGAGAGT
TCCGCCGCACGGTGCGGCGTAACTTCGGCATCATGAACGAGGAGTGGGTC
AAGAAATATTTCAAGGCGTTCGATCGGAATCACAGGAACAAAGGAGTACC
TCACCGCGGGAGAGTTCCGCCGCACGGTGCGGCGTAACTTCGGCATCATG
AACGAGGAGTGGGTCAAGAAATATTTCAAGGCGTTCGATCGGAATCACAG
CGGTACCATCGATTTCCATGAGTACGTCATGGGATTCGCCCGGTACCATC
GATTTCCATGAGTACGTCATGGGATTCGCC
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