mRNA_Ecto-sp9_F_contig110.881.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig110.881.1
Unique NamemRNA_Ecto-sp9_F_contig110.881.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.881.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA5_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 4.230e-118
Identity = 203/224 (90.62%), Postives = 204/224 (91.07%), Query Frame = 1 
Query:    1 MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSEDRDSXXXXXNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVDTSVADGDPRVETFVEPYQGRPQLKRMRVRYKPAGAGSEYSPSRPLAGHEQPKGRQDDEDGATPAXXXXXXXXXXXXXXXXXXXXXXXXXEVSAETPKS 672
            MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSED DS     NRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVD SVADGDPRV+TFVEPYQGRPQLK MRVRYKPA AGSEYSP RP AGHEQPKGRQDDEDGATPAXXXXXXXXXXXXXXXX         EVSAETPKS
Sbjct:    1 MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSEDGDSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVDASVADGDPRVDTFVEPYQGRPQLKGMRVRYKPARAGSEYSPCRPPAGHEQPKGRQDDEDGATPAXXXXXXXXXXXXXXXXRGVAAAQAAEVSAETPKS 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig110.881.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.230e-11890.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig110contigEcto-sp9_F_contig110:38134..41296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-directed RNA polymerase I, subunit RPA34.5
Ec32 orthologEc-14_000360.1
Exons4
Model size783
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig110.881.1prot_Ecto-sp9_F_contig110.881.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig110 38134..41296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928334.7291136-CDS-Ecto-sp9_F_contig110:38133..382501622928334.7291136-CDS-Ecto-sp9_F_contig110:38133..38250Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 38134..38250 +
1692277837.5246134-CDS-Ecto-sp9_F_contig110:38133..382501692277837.5246134-CDS-Ecto-sp9_F_contig110:38133..38250Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 38134..38250 +
1622928334.7427566-CDS-Ecto-sp9_F_contig110:38711..389391622928334.7427566-CDS-Ecto-sp9_F_contig110:38711..38939Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 38712..38939 +
1692277837.5338018-CDS-Ecto-sp9_F_contig110:38711..389391692277837.5338018-CDS-Ecto-sp9_F_contig110:38711..38939Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 38712..38939 +
1622928334.7590811-CDS-Ecto-sp9_F_contig110:40216..403611622928334.7590811-CDS-Ecto-sp9_F_contig110:40216..40361Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 40217..40361 +
1692277837.5464518-CDS-Ecto-sp9_F_contig110:40216..403611692277837.5464518-CDS-Ecto-sp9_F_contig110:40216..40361Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 40217..40361 +
1622928334.770364-CDS-Ecto-sp9_F_contig110:41003..412961622928334.770364-CDS-Ecto-sp9_F_contig110:41003..41296Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 41004..41296 +
1692277837.5622065-CDS-Ecto-sp9_F_contig110:41003..412961692277837.5622065-CDS-Ecto-sp9_F_contig110:41003..41296Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 41004..41296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig110.881.1

>prot_Ecto-sp9_F_contig110.881.1 ID=prot_Ecto-sp9_F_contig110.881.1|Name=mRNA_Ecto-sp9_F_contig110.881.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=261bp
MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGR
EGKVLGRANKRNDSEDRDSDEEDGNRDGEDLALRAGDVAETHGFRALFSA
KEDGALAAAPPFVGQVNVSVDMPDVDTSVADGDPRVETFVEPYQGRPQLK
RMRVRYKPAGAGSEYSPSRPLAGHEQPKGRQDDEDGATPATPDQGEKAKK
ASAANSRGAAAAQAAEVSAETPKSSKKKKRKSTAGGGRAEEEGHGVSSAK
KSKKKKGVER*
back to top

mRNA from alignment at Ecto-sp9_F_contig110:38134..41296+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig110.881.1 ID=mRNA_Ecto-sp9_F_contig110.881.1|Name=mRNA_Ecto-sp9_F_contig110.881.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3163bp|location=Sequence derived from alignment at Ecto-sp9_F_contig110:38134..41296+ (Ectocarpus species9 EcSCA_722f female)
ATGGCAGAAGGGTTCACAGCCGCAGACTACGTCACAAGCCTGCCTTTGTC
CGAGGTGCAGGGCAAGCGATTGTGGCTCTTGAGGGTCCCTCGACATATCG
ATACATCCAGACTGGAGGTGAGAGCATGTCTGCCGTGCGGTGTCTGCAGC
TCTGGTCTGGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGACCCGTGACCTGCGTGGGGCCGTCCCACTGTTGGCGGTCCAC
GACCGCTGCTGTATCTGCATAGCACATGATGTCTCGACTCACTTTGTTGG
TATCGCTATTGTATCATAGTATGTCGTAGGGTGAGCCATCGCCAATCAAA
TCAGGCCGGACAGAGAGACTTCCGCACTCCTTGTTGTACCCTCGAGTGTA
GTGGGTCGGGATATGTAGAAGCCACCAGGACCTGCGGCCGTATTTGGTTG
TGCCACATCGTCTGTTTGCTGTGCACGACAGCATTCCAAATAACCGTGTT
GCTGGTCGATACTGCTGTCCACTGCTGCTGCTGTACGCGTATGCATACCA
CGAAACGTCCTTCTCTCTCCGTCGACAGGGTGTCAAGGTTAAGCTGCCAC
GAAAGGGTCGGGAGGGGAAGGTGTTGGGCAGGGCCAACAAGCGAAACGAT
AGCGAAGATAGAGATAGCGACGAGGAGGATGGAAACCGAGACGGTGAAGA
TTTGGCGCTCAGGGCAGGAGACGTTGCGGAGACCCATGGGTTCCGGGCCC
TTTTCAGCGCCAAGGAGGATGGCGCGTTGGCCGCCGCGCCTCCATTTGTT
GGCCAGGTGCGGAGGTGGGGGGGTGTCGGCGACCTTCACCCACAGAAGAA
CAGAAGAAGAGAAGAAGCGGGTCTTGCGGTACTGGGTTGTCTCGTCATGT
CGTGTGTTGTACATGCTCGCTCGATGCAATTTAGGCCCTGCGGATTTATT
GTACAAAAGCAATATGCTTCCGTCAGGTTTTCGGTACAATATGCCAACTT
TAAAATTCTGTTCAAACCTATGCATACATCGATCTATCCTGCTGTACTTG
CGTAGATCCATGGGATCATGTGTTGTTGTATTGTTCACACCCTGAAACGA
GGTGTTTTGTGTTTTGTGTTGTGCCTTTCACACAACAGTAGCCCGCCCTC
CTACAGCAGTAGCCCCCCCACCTCCGACGTTTGTTCTTCTCATCCAACGA
TATAGTAGTCACCCCTCGGAGCAATCTCAAAGGAGATCCGGCACATATGG
AATAGAACTGTACGAAGTAGTTATCTACTGTAGATATCCCCCAGCGAGTG
GCGGCTTGGAATTGACAAAAGTGCGAGAAAACTAATCGGTAGATCTACCT
ACCCCCGTGAGTAGCTTCGATCCCGATAGCGTTGTATCAGTGTATATTGT
ATCATTGTATGATTGACCAAACGTTCCGAAAACCCGCGCAGCTCTCACGC
CGCGGCAGTATGTACGTGCCGCTCGTTGTCCCGCATGGCCTCCAACATGG
ATCTGTCTGCGCAGCCAGAGTTTTGGCTTCCACTAACCCGTCGAACACTC
ACACTTGTTGACCAGTTCTCGAACGGGACGTTCCGGTTCGTCATGGTGAC
AGTTTCGCTTTCGCTAGAAAAGAGCTTCGATTTCGTCGGCGATGCGCGCC
TTGAATGTCATCGCGAGAAGACATCAACATCCCCTACGATCTCTCGTCAG
TAATCAAGTCGAATCTGATTTGCTCAAGAACACAACGGATTTCGAACTAG
AAACCCGGGGGAAACCACCCACGACCTTGACATTTCAAAGCTTTCATGTT
TGGGTTGACCATGAAGATATTATAGGTTGAATGTCTAGCAAGGGTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACGCGCACCCGCTGTT
TCTTCCAATCGTTTCTTCCTGCTTGACGCATTTAGCTTTGCCTTCCATGG
ACGCGCACACGTGTGTTCCAAACACGAGGATCTGACGGCTGATTTAAGAG
CGAATAATGATCCAGAGCTCTCCCAAACCGCCCCTCTTGCGCCTGTCGTG
TTACATGCCTGTTTGCCACTCCTATTGTAATAGGTGAACGTTTCGGTGGA
CATGCCAGATGTTGACACGTCCGTTGCGGATGGCGACCCACGCGTAGAAA
CGTTCGTCGAGCCCTACCAGGGACGCCCCCAGCTAAAGAGGATGCGGGTG
CGTTACAAGCCGGCCGGAGCAGGATCAGGTGGGTGGCACTCTTGTCTACT
GGTTATGCTGTTGTCTCTGTTGTTGTCTTAACATTATTAACCGTACCGGT
CCCCTCTCGGTACCTTGTAATGTCCGTACTGGTCCAACTGACGCGGACGC
CTTCCCAGTTGTGTCACCCGGCGACGATGTGCGTTTCGCGGGGGCAGCTC
ATAGGCCATTCTGTATCATTCTTTATCCGAGGGCGCCATGTACACGTTGT
TTGGCACTGCCGCTGTCGGCACGGCGCGGGGGGTCGTGCAGGGAGGGAGA
AACGTTAACTTGTTTTCATCTGTTTTCTCAGAGGATACTGAACGGGCATT
GTTTGAAAATTTCCTGGTTTAGCAGGAAGATCAGTGCCCCATCAAAGAAA
CCTTAACTTTATTGATTGAACCTTTCTTCTAAGAGTATGTGGAAAGAGCG
TTGGTCGGAAAATGTCTTGTTTGGCTGGACGATTATTCCCCTATTTTAGT
CAATCGTGCCTGTACCAGTAACTCAGTCTGCTCGACTGCTGTAAATTCCT
TCTCTTTGACACAGACACGGCTGTTGCTGTTAATATTAACTCTACACGCA
ACGGCTTACGAACGCGCATACTCACTTACAACAACAAACACGCTACTGCT
GTACATTACTTCCCACCCAGAGTATTCGCCGAGTCGCCCGCTAGCTGGAC
ATGAACAACCAAAGGGTCGCCAAGACGATGAAGATGGTGCAACGCCGGCT
ACCCCCGACCAGGGGGAAAAAGCGAAGAAAGCTTCTGCGGCCAACTCCAG
AGGAGCAGCAGCGGCGCAAGCAGCGGAGGTTTCTGCAGAAACACCGAAAA
GCTCCAAGAAAAAGAAGCGAAAGTCAACGGCGGGGGGGGGTCGTGCAGAG
GAGGAGGGGCACGGGGTGTCTTCGGCCAAGAAGTCCAAGAAGAAGAAAGG
CGTCGAAAGATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig110:38134..41296+

>mRNA_Ecto-sp9_F_contig110.881.1 ID=mRNA_Ecto-sp9_F_contig110.881.1|Name=mRNA_Ecto-sp9_F_contig110.881.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1566bp|location=Sequence derived from alignment at Ecto-sp9_F_contig110:38134..41296+ (Ectocarpus species9 EcSCA_722f female)
ATGGCAGAAGGGTTCACAGCCGCAGACTACGTCACAAGCCTGCCTTTGTC
CGAGGTGCAGGGCAAGCGATTGTGGCTCTTGAGGGTCCCTCGACATATCG
ATACATCCAGACTGGAGATGGCAGAAGGGTTCACAGCCGCAGACTACGTC
ACAAGCCTGCCTTTGTCCGAGGTGCAGGGCAAGCGATTGTGGCTCTTGAG
GGTCCCTCGACATATCGATACATCCAGACTGGAGGGTGTCAAGGTTAAGC
TGCCACGAAAGGGTCGGGAGGGGAAGGTGTTGGGCAGGGCCAACAAGCGA
AACGATAGCGAAGATAGAGATAGCGACGAGGAGGATGGAAACCGAGACGG
TGAAGATTTGGCGCTCAGGGCAGGAGACGTTGCGGAGACCCATGGGTTCC
GGGCCCTTTTCAGCGCCAAGGAGGATGGCGCGTTGGCCGCCGCGCCTCCA
TTTGTTGGCCAGGGTGTCAAGGTTAAGCTGCCACGAAAGGGTCGGGAGGG
GAAGGTGTTGGGCAGGGCCAACAAGCGAAACGATAGCGAAGATAGAGATA
GCGACGAGGAGGATGGAAACCGAGACGGTGAAGATTTGGCGCTCAGGGCA
GGAGACGTTGCGGAGACCCATGGGTTCCGGGCCCTTTTCAGCGCCAAGGA
GGATGGCGCGTTGGCCGCCGCGCCTCCATTTGTTGGCCAGGTGAACGTTT
CGGTGGACATGCCAGATGTTGACACGTCCGTTGCGGATGGCGACCCACGC
GTAGAAACGTTCGTCGAGCCCTACCAGGGACGCCCCCAGCTAAAGAGGAT
GCGGGTGCGTTACAAGCCGGCCGGAGCAGGATCAGGTGAACGTTTCGGTG
GACATGCCAGATGTTGACACGTCCGTTGCGGATGGCGACCCACGCGTAGA
AACGTTCGTCGAGCCCTACCAGGGACGCCCCCAGCTAAAGAGGATGCGGG
TGCGTTACAAGCCGGCCGGAGCAGGATCAGAGTATTCGCCGAGTCGCCCG
CTAGCTGGACATGAACAACCAAAGGGTCGCCAAGACGATGAAGATGGTGC
AACGCCGGCTACCCCCGACCAGGGGGAAAAAGCGAAGAAAGCTTCTGCGG
CCAACTCCAGAGGAGCAGCAGCGGCGCAAGCAGCGGAGGTTTCTGCAGAA
ACACCGAAAAGCTCCAAGAAAAAGAAGCGAAAGTCAACGGCGGGGGGGGG
TCGTGCAGAGGAGGAGGGGCACGGGGTGTCTTCGGCCAAGAAGTCCAAGA
AGAAGAAAGGCGTCGAAAGATAGAGTATTCGCCGAGTCGCCCGCTAGCTG
GACATGAACAACCAAAGGGTCGCCAAGACGATGAAGATGGTGCAACGCCG
GCTACCCCCGACCAGGGGGAAAAAGCGAAGAAAGCTTCTGCGGCCAACTC
CAGAGGAGCAGCAGCGGCGCAAGCAGCGGAGGTTTCTGCAGAAACACCGA
AAAGCTCCAAGAAAAAGAAGCGAAAGTCAACGGCGGGGGGGGGTCGTGCA
GAGGAGGAGGGGCACGGGGTGTCTTCGGCCAAGAAGTCCAAGAAGAAGAA
AGGCGTCGAAAGATAG
back to top