prot_Ecto-sp9_F_contig110.881.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig110.881.1
Unique Nameprot_Ecto-sp9_F_contig110.881.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length261
Homology
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BLAST of mRNA_Ecto-sp9_F_contig110.881.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA5_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 4.230e-118
Identity = 203/224 (90.62%), Postives = 204/224 (91.07%), Query Frame = 0 
Query:    1 MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSEDRDSXXXXXNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVDTSVADGDPRVETFVEPYQGRPQLKRMRVRYKPAGAGSEYSPSRPLAGHEQPKGRQDDEDGATPAXXXXXXXXXXXXXXXXXXXXXXXXXEVSAETPKS 224
            MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSED DS     NRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVD SVADGDPRV+TFVEPYQGRPQLK MRVRYKPA AGSEYSP RP AGHEQPKGRQDDEDGATPAXXXXXXXXXXXXXXXX         EVSAETPKS
Sbjct:    1 MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSEDGDSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVDASVADGDPRVDTFVEPYQGRPQLKGMRVRYKPARAGSEYSPCRPPAGHEQPKGRQDDEDGATPAXXXXXXXXXXXXXXXXRGVAAAQAAEVSAETPKS 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig110.881.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.230e-11890.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013240DNA-directed RNA polymerase I, subunit RPA34.5PFAMPF08208RNA_polI_A34coord: 20..255
e-value: 6.1E-41
score: 140.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig110contigEcto-sp9_F_contig110:38134..41296 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig110.881.1mRNA_Ecto-sp9_F_contig110.881.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig110 38134..41296 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig110.881.1 ID=prot_Ecto-sp9_F_contig110.881.1|Name=mRNA_Ecto-sp9_F_contig110.881.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=261bp
MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGR
EGKVLGRANKRNDSEDRDSDEEDGNRDGEDLALRAGDVAETHGFRALFSA
KEDGALAAAPPFVGQVNVSVDMPDVDTSVADGDPRVETFVEPYQGRPQLK
RMRVRYKPAGAGSEYSPSRPLAGHEQPKGRQDDEDGATPATPDQGEKAKK
ASAANSRGAAAAQAAEVSAETPKSSKKKKRKSTAGGGRAEEEGHGVSSAK
KSKKKKGVER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013240DNA-dir_RNA_pol1_su_RPA34