mRNA_Ecto-sp9_F_contig10994.860.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10994.860.1
Unique NamemRNA_Ecto-sp9_F_contig10994.860.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Match: RING-CH-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.090e-65
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:   88 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAVTPTLHRAWCAARLKLLARRR 438
            GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAVTPTLHRAWCAARLKLLARRR
Sbjct: 1156 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAVTPTLHRAWCAARLKLLARRR 1272
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BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Match: RING-CH-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 5.800e-52
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:   88 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKA 375
            GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKA
Sbjct: 1072 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKA 1167
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BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.520e-19
Identity = 58/114 (50.88%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:   55 IVGPPLRRPPPGWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVL----PFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAVTP 384
            +VG PL+RPPPGWDD AG  QGRWAWG E P EV+ NLA RR      + L  VLL   WATVL    CLV+L    P +LGR +F L+ +P    HD  +FA+G+ L  A  P
Sbjct:  840 LVGAPLQRPPPGWDDLAGGGQGRWAWGNEEPTEVERNLAKRRTPDRLTLRL-GVLLGLGWATVL----CLVLLGTWAPLVLGRRVFQLLRIPTSVIHDPFAFALGIGLCLAARP 948
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BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PCV0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.450e-8
Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 1 
Query:   55 IVGPPLRRPPPGWDD-PAGVA--QGRWAWGAEPPGEVQLNLAPRRR----------HGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVG 357
            + GPP+ RPP GWDD  AG A  QGRWAWG E    ++  +A R +               + LV+V+LL+ +AT       L   P  +GRLL+  + +P  W HD   FAVG
Sbjct:  448 VPGPPVARPPEGWDDLGAGGADVQGRWAWGREKKSTIERGVAQRLKLFYPHQGVLNFALVLIKLVSVILLSWFATTCFLGAVLGG-PLAIGRLLYIALRIPDHWIHDPLGFAVG 560
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BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Match: RING-CH-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.710e-5
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   16 DGGEAGKDEEEGIIVGPPLRRPPPGWDDPAGVAQ 117
            D G  G DE++GI+VG PL RPPPGWDDPAG  Q
Sbjct: 1085 DSGLRGSDEDDGIVVGAPLVRPPPGWDDPAGAHQ 1118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
RING-CH-type1.090e-65100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RING-CH-type5.800e-52100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical5.520e-1950.88protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical5.450e-838.60protein (Fragment) n=1 Tax=Amphora coffeiformis Ta... [more]
RING-CH-type3.710e-567.65domain-containing protein n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10994contigEcto-sp9_F_contig10994:456..2382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.6e-44
Seed eggNOG ortholog2880.D8LBR1
KEGG koko:K10661
KEGG Pathwayko04141,map04141
GOsGO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215
EggNOG free text desc.chlorophyll binding
EggNOG OGsCOG5183@1,KOG1609@2759
EC2.3.2.27
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categorysignal anchor
Exons4
Model size439
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10994.860.1prot_Ecto-sp9_F_contig10994.860.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10994 456..2381 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928331.265231-CDS-Ecto-sp9_F_contig10994:455..5001622928331.265231-CDS-Ecto-sp9_F_contig10994:455..500Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10994 456..500 +
1692277835.9503145-CDS-Ecto-sp9_F_contig10994:455..5001692277835.9503145-CDS-Ecto-sp9_F_contig10994:455..500Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10994 456..500 +
1622928331.2797437-CDS-Ecto-sp9_F_contig10994:925..10561622928331.2797437-CDS-Ecto-sp9_F_contig10994:925..1056Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10994 926..1056 +
1692277835.9608316-CDS-Ecto-sp9_F_contig10994:925..10561692277835.9608316-CDS-Ecto-sp9_F_contig10994:925..1056Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10994 926..1056 +
1622928331.2951803-CDS-Ecto-sp9_F_contig10994:1553..17491622928331.2951803-CDS-Ecto-sp9_F_contig10994:1553..1749Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10994 1554..1749 +
1692277835.9691443-CDS-Ecto-sp9_F_contig10994:1553..17491692277835.9691443-CDS-Ecto-sp9_F_contig10994:1553..1749Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10994 1554..1749 +
1622928331.310037-CDS-Ecto-sp9_F_contig10994:2315..23811622928331.310037-CDS-Ecto-sp9_F_contig10994:2315..2381Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10994 2316..2381 +
1692277835.9777184-CDS-Ecto-sp9_F_contig10994:2315..23811692277835.9777184-CDS-Ecto-sp9_F_contig10994:2315..2381Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10994 2316..2381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10994.860.1

>prot_Ecto-sp9_F_contig10994.860.1 ID=prot_Ecto-sp9_F_contig10994.860.1|Name=mRNA_Ecto-sp9_F_contig10994.860.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=146bp
VKAWWDGGEAGKDEEEGIIVGPPLRRPPPGWDDPAGVAQGRWAWGAEPPG
EVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLF
SLIHLPRRWTHDTASFAVGLTLLKAVTPTLHRAWCAARLKLLARRR
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mRNA from alignment at Ecto-sp9_F_contig10994:456..2382+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10994.860.1 ID=mRNA_Ecto-sp9_F_contig10994.860.1|Name=mRNA_Ecto-sp9_F_contig10994.860.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1927bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10994:456..2382+ (Ectocarpus species9 EcSCA_722f female)
GTGAAGGCTTGGTGGGACGGAGGAGAGGCGGGCAAAGATGAGGAGGTGGG
TGGTGGTGGTGGTGGTGGTGGTGTATGGTTTGGTTTGGGCATGAACGTAA
TTTTCGGTGGTTGCTTTTTCGTGGAGTTTGGTGTACACTCGAGAAGGTCG
CTGGTTGTGTAGCGAAACGTTTGTACACGATCTCACGGCCGCGTTGTGCA
CCAAGCTGAAGATGTAGTGGATGGTGAGGAGGGCGATGGGGAGCGGAGTT
TGATAAGCAGGACGTGGTGGTGGGAATGGCCTTGACATGGCAGCGATATA
AACGAAGACAAAAGATGTGGCTTTTCCAGCCCGTCGCTTGGCATGAGCAC
CATGTGTGGCGGTCGCGTTCATTCTTGGTGTTCCTTGTTCCCCGGTCGCC
TACACCAACGGCCCGCGTAACGATGCGCTGAACCTATGCTGTCTTGGTTG
CTTCTTCCCCCTTTCGACAGGAGGGTATCATCGTAGGGCCTCCGTTGCGG
CGCCCGCCCCCCGGGTGGGACGACCCCGCCGGCGTGGCACAGGGTAGGTG
GGCGTGGGGCGCGGAGCCCCCCGGAGAGGTGCAGCTCAACCTTGCGCCGA
GGTGAGGATATGGTGGTTTTTGGCTCGATAAGGCTGGCACTGGTGTTGTC
GGCCTTGTGTTCGTGTTTCGTTGCTCTGGACGCGAAGAAACGCGTATTTC
GTGCCGTATGTAGGCACTTTTTTTTTGTTGGTGGTGGTGTGGCCTGCGAC
CGCGGTGTATGGAAAGCCTTTGTCGGTAGCGAGCCGGTTGGACCAATGCA
CCATGGGAAGAGAACAACGTTTGGTCGCGGCAAAGGGCCATAAGGCGTTT
CTGTATGACGGAAGCAGCAGTTAGCCGCAGCAACTTGCAACGACGATGGC
AGCGGCGTCAGAAACCAACACGACGTAAACGCAGAAAAAGAACGACGATG
AAAACTTAGCCATACTTGAAAAAATAGCCACACTCCTTCGCGGTCTTCAT
GTTCTTGTAGTACAGCAGTGCGGTTGTATGATCTTCCTGGTTATATTTAC
ATTTTTTTTGTTTTGTGGTACTGTAATCCGTGTTTTAAACGCGGTCAGGC
GGCGGCACGGCGCGCGCGCGGTCCCTCTGGTGGCGGTGCTGCTTCTGGCG
GCGTGGGCGACCGTTCTCGTGGCCGCCCTGTGCCTCGTAGTGCTCCCGTT
CCTGCTGGGACGCCTGCTGTTCTCGCTGATCCACCTGCCCAGGCGCTGGA
CGCACGACACGGCCAGTTTCGCCGTGGGATTGACTCTACTAAAGGTGTGC
CAGGTGGTTGCAATGCTGTCAGGGAGGGGGGGGGGGTGCGTATTGTTGTT
CGTGTGCGTGCTTCCCTGGTGTGGGGACGCGGTGTGAGGGGGGGGGACAG
GTGTGAGGTTTTTTGGTGAGGTGTTGAAGCGCGGCGCAGAAAGACGCAGA
CGGAGTAGAGAGAGAGAGCGGGGGCGGGGAGGGAGGGAGGGAGGGAGGGA
GAGAGGCAGAGACCGAGGCAAGCACGCCGTGAGATAGAGACAGACAGGCA
GGCAGGCAGGCCTTTTTACAGCCGCAGGTCGGGTAAGGTTGGAAGCGTAT
GTGTCGCGTGTATTGTCACCCCGTCCACTGACGTGAGCCTACACCTTTCG
ATGTGCGTGGGCGCAATTGCAGCCGAGGCCCCCCTAAAAGAAGTCTGCGC
CTAGTGATTTACATTACATAGGATTATCTCTCAGTAGTTTCACCGATCTT
CTTCTGACCCAGGACCTGTCGGGACCGGGGACTACCGCCGTGTTTTGTAT
GTTTCTCACTTGTACCCCCGTTCTTTTTGTTGCATCCCGTGTCCCATCCC
CGTCCGTCAGGCCGTTACCCCGACGCTCCACCGCGCCTGGTGCGCGGCGC
GCCTCAAGCTCCTCGCCAGGCGAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10994:456..2382+

>mRNA_Ecto-sp9_F_contig10994.860.1 ID=mRNA_Ecto-sp9_F_contig10994.860.1|Name=mRNA_Ecto-sp9_F_contig10994.860.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=876bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10994:456..2382+ (Ectocarpus species9 EcSCA_722f female)
GTGAAGGCTTGGTGGGACGGAGGAGAGGCGGGCAAAGATGAGGAGGTGAA
GGCTTGGTGGGACGGAGGAGAGGCGGGCAAAGATGAGGAGGAGGGTATCA
TCGTAGGGCCTCCGTTGCGGCGCCCGCCCCCCGGGTGGGACGACCCCGCC
GGCGTGGCACAGGGTAGGTGGGCGTGGGGCGCGGAGCCCCCCGGAGAGGT
GCAGCTCAACCTTGCGCCGAGGAGGGTATCATCGTAGGGCCTCCGTTGCG
GCGCCCGCCCCCCGGGTGGGACGACCCCGCCGGCGTGGCACAGGGTAGGT
GGGCGTGGGGCGCGGAGCCCCCCGGAGAGGTGCAGCTCAACCTTGCGCCG
AGGCGGCGGCACGGCGCGCGCGCGGTCCCTCTGGTGGCGGTGCTGCTTCT
GGCGGCGTGGGCGACCGTTCTCGTGGCCGCCCTGTGCCTCGTAGTGCTCC
CGTTCCTGCTGGGACGCCTGCTGTTCTCGCTGATCCACCTGCCCAGGCGC
TGGACGCACGACACGGCCAGTTTCGCCGTGGGATTGACTCTACTAAAGGC
GGCGGCACGGCGCGCGCGCGGTCCCTCTGGTGGCGGTGCTGCTTCTGGCG
GCGTGGGCGACCGTTCTCGTGGCCGCCCTGTGCCTCGTAGTGCTCCCGTT
CCTGCTGGGACGCCTGCTGTTCTCGCTGATCCACCTGCCCAGGCGCTGGA
CGCACGACACGGCCAGTTTCGCCGTGGGATTGACTCTACTAAAGGCCGTT
ACCCCGACGCTCCACCGCGCCTGGTGCGCGGCGCGCCTCAAGCTCCTCGC
CAGGCGAAGAGCCGTTACCCCGACGCTCCACCGCGCCTGGTGCGCGGCGC
GCCTCAAGCTCCTCGCCAGGCGAAGA
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