prot_Ecto-sp9_F_contig10994.860.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10994.860.1
Unique Nameprot_Ecto-sp9_F_contig10994.860.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length146
Homology
BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Match: RING-CH-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 1.090e-65
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query:   30 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAVTPTLHRAWCAARLKLLARRR 146
            GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAVTPTLHRAWCAARLKLLARRR
Sbjct: 1156 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAVTPTLHRAWCAARLKLLARRR 1272          
BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Match: RING-CH-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 5.800e-52
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query:   30 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKA 125
            GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKA
Sbjct: 1072 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKA 1167          
BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.520e-19
Identity = 58/114 (50.88%), Postives = 70/114 (61.40%), Query Frame = 0
Query:   19 IVGPPLRRPPPGWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVL----PFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLKAVTP 128
            +VG PL+RPPPGWDD AG  QGRWAWG E P EV+ NLA RR      + L  VLL   WATVL    CLV+L    P +LGR +F L+ +P    HD  +FA+G+ L  A  P
Sbjct:  840 LVGAPLQRPPPGWDDLAGGGQGRWAWGNEEPTEVERNLAKRRTPDRLTLRL-GVLLGLGWATVL----CLVLLGTWAPLVLGRRVFQLLRIPTSVIHDPFAFALGIGLCLAARP 948          
BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PCV0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.450e-8
Identity = 44/114 (38.60%), Postives = 59/114 (51.75%), Query Frame = 0
Query:   19 IVGPPLRRPPPGWDD-PAGVA--QGRWAWGAEPPGEVQLNLAPRRR----------HGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVG 119
            + GPP+ RPP GWDD  AG A  QGRWAWG E    ++  +A R +               + LV+V+LL+ +AT       L   P  +GRLL+  + +P  W HD   FAVG
Sbjct:  448 VPGPPVARPPEGWDDLGAGGADVQGRWAWGREKKSTIERGVAQRLKLFYPHQGVLNFALVLIKLVSVILLSWFATTCFLGAVLGG-PLAIGRLLYIALRIPDHWIHDPLGFAVG 560          
BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Match: RING-CH-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.710e-5
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 0
Query:    6 DGGEAGKDEEEGIIVGPPLRRPPPGWDDPAGVAQ 39
            D G  G DE++GI+VG PL RPPPGWDDPAG  Q
Sbjct: 1085 DSGLRGSDEDDGIVVGAPLVRPPPGWDDPAGAHQ 1118          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10994.860.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
RING-CH-type1.090e-65100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RING-CH-type5.800e-52100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical5.520e-1950.88protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical5.450e-838.60protein (Fragment) n=1 Tax=Amphora coffeiformis Ta... [more]
RING-CH-type3.710e-567.65domain-containing protein n=1 Tax=Tribonema minus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 95..113
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 138..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..94
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..68
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 114..137
NoneNo IPR availableTMHMMTMhelixcoord: 69..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10994contigEcto-sp9_F_contig10994:456..2381 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10994.860.1mRNA_Ecto-sp9_F_contig10994.860.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10994 456..2382 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10994.860.1 ID=prot_Ecto-sp9_F_contig10994.860.1|Name=mRNA_Ecto-sp9_F_contig10994.860.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=146bp
VKAWWDGGEAGKDEEEGIIVGPPLRRPPPGWDDPAGVAQGRWAWGAEPPG
EVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLF
SLIHLPRRWTHDTASFAVGLTLLKAVTPTLHRAWCAARLKLLARRR
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