mRNA_Ecto-sp9_F_contig1086.747.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1086.747.1
Unique NamemRNA_Ecto-sp9_F_contig1086.747.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U8_ECTSI)

HSP 1 Score: 620 bits (1598), Expect = 3.720e-219
Identity = 310/337 (91.99%), Postives = 318/337 (94.36%), Query Frame = 1
Query:  181 EVAPKGQVAALGVREGWRLTNIGKTDFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGADDAPNGVVRAEEQSNVEACDGSRVDNAVSETAGGEAATAGPASGGETGNSDQVCVEGKELEEDRKKGASAGVEIGEDGETKETEGKGEGQVFEGKDVPSCRAETGRGDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
            +VAPKGQVAALGVREGWRLTNIGK DFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGAD+APNG VRAEEQS VEACDGSRVDNAVSETAGGEAATAGPASGGETGNSDQVCVEGKELE+DRKKGASAGVEIGE+GETKETEGKGEGQVF GKDVPSC+AETGRGDGEVTLMYEMYDEKFPIKDGSISAA++DETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRD+E       RMKQ      VVQGMKQDLPEDGE VNRKDD RNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF
Sbjct:   60 QVAPKGQVAALGVREGWRLTNIGKNDFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGADEAPNGAVRAEEQSIVEACDGSRVDNAVSETAGGEAATAGPASGGETGNSDQVCVEGKELEQDRKKGASAGVEIGENGETKETEGKGEGQVFGGKDVPSCKAETGRGDGEVTLMYEMYDEKFPIKDGSISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDDEEEKQDRERMKQ------VVQGMKQDLPEDGEFVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 390          
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM1_9PHAE)

HSP 1 Score: 466 bits (1199), Expect = 2.150e-159
Identity = 254/346 (73.41%), Postives = 266/346 (76.88%), Query Frame = 1
Query:  160 SPSYPLYEVAPKGQVAALGVREGWRLTNIGK-TDFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGADDAPNGVVRAEEQSNVEACDGSRVDNAVSETAGGEAATAGPASGGETGNSDQVCVEGKELEEDRKKGASAGVEIGEDGETKETEGKGEGQVFEGKDVPSCRAETGR-GDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
            +P   + +VAPKGQVAALGVREGWRLTNIGK TDFTVTA STPK ILEALAAARKRGTTYTLGFSTGGA +APNGVV  EEQS+VEA DGSRVD AVSE                 GNSD V VEGKE EEDRKKGASAGVEIG+ GETKETEG GEGQVFEGKD PS +AETGR GDGEVTLMYEMYDE FPIK+G ISAA++DETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLE    GT                                    VVQGMK+DLPEDGELVNRKDD RNGLESCSCVYGNPCVDEYGCK+WHSRYAVAKANGWKGF
Sbjct:   29 TPGAHVNKVAPKGQVAALGVREGWRLTNIGKKTDFTVTAMSTPKRILEALAAARKRGTTYTLGFSTGGAYEAPNGVVGTEEQSDVEARDGSRVDTAVSEXXXXXXXXXXXXXXXXXGNSDGVRVEGKEQEEDRKKGASAGVEIGDGGETKETEGNGEGQVFEGKDAPSSKAETGRRGDGEVTLMYEMYDENFPIKNGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEALVHGT-----------------------------------QVVQGMKRDLPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKNWHSRYAVAKANGWKGF 339          
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VPD3_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.020e-47
Identity = 82/172 (47.67%), Postives = 106/172 (61.63%), Query Frame = 1
Query:  679 RGDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVP-YLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
            R +G V L YEMY E+F I +GS +A  VDE YCLSFVMP+C +HL    P  + A+E++      Y+ E+P+GTFHGLE G+ Y+VY+ ++ E       +M+         Q  K D  +DG           G ESCSC+ GNPCVDEYGCKDWH+RYA+A  NGWKGF
Sbjct:   82 RQNGHVVLKYEMYSEQFEIANGSTTATVVDEAYCLSFVMPHCRIHLSEWDPPTKVAKESQSATNSVYVLEDPAGTFHGLESGKTYYVYIEQEAEQLAQDQAKMRAIAATMDGAQPSKADKKDDGR----------GFESCSCIEGNPCVDEYGCKDWHNRYAIAMKNGWKGF 243          
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0G6_9STRA)

HSP 1 Score: 175 bits (444), Expect = 7.510e-47
Identity = 82/172 (47.67%), Postives = 106/172 (61.63%), Query Frame = 1
Query:  679 RGDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVP-YLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
            R +G V L YEMY E+F I +GS +A  VDE YCLSFVMP+C +HL    P  + A+E++      Y+ E+P+GTFHGLE G+ Y+VY+ ++ E       +M+         Q  K D  +DG           G ESCSC+ GNPCVDEYGCKDWH+RYA+A  NGWKGF
Sbjct:  153 RQNGHVVLKYEMYSEQFEIANGSTTATVVDEAYCLSFVMPHCRIHLSEWDPPTKVAKESQSATNSVYVLEDPAGTFHGLESGKTYYVYIEQEAEQLAQDQAKMRAIAATMDGAQPSKADKKDDGR----------GFESCSCIEGNPCVDEYGCKDWHNRYAIAMKNGWKGF 314          
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Hypothetical (protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXS3_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.330e-46
Identity = 87/172 (50.58%), Postives = 110/172 (63.95%), Query Frame = 1
Query:  688 GEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVP----YLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
            G V L+YE YDE FPI DGS +   +DE Y LSFVMPNC +HL    P  +  R+ E EL P    Y+EENP+G +HGL   EVY+VY+ +D            +      V++ +K D     E + +KDD R  +ESCSC+YGNPCVDEYGCKDW++RYA+AKANGWKGF
Sbjct:   38 GLVKLIYETYDELFPITDGSTTHENIDEVYALSFVMPNCRIHLSKYDPKQK--RQLEIELKPLNEIYIEENPTGVYHGLIADEVYYVYIEQDSIQLEL------EKENNAKVIEILKND-----EEIIKKDDGRV-IESCSCIYGNPCVDEYGCKDWNNRYAIAKANGWKGF 195          
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6C9_PYTOL)

HSP 1 Score: 170 bits (430), Expect = 1.440e-44
Identity = 86/171 (50.29%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  679 RGDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
            RG+G V L+YE YDE FPI DGS + A +DE YCLSFVMPNC + L     A+R+ REN G     + E+P G +  L   E Y+V V ++ +       R  Q  T+      +KQD          KDD R G ESCSC+YGNPCVDEYGCKDWHSR+A+A ANGWKGF
Sbjct:  181 RGNGMVKLIYEQYDELFPIVDGSTTQANIDEVYCLSFVMPNCLVRLSYHPNAERFERENTGTFDSLVREDPRGVYQDLIKDETYYVVVEQEADQL-----RRDQEATKVKWAPEIKQDKLS-------KDDGR-GFESCSCIYGNPCVDEYGCKDWHSRFAIATANGWKGF 338          
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2RJ32_PHYPN)

HSP 1 Score: 165 bits (417), Expect = 2.270e-43
Identity = 83/174 (47.70%), Postives = 106/174 (60.92%), Query Frame = 1
Query:  682 GDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRK----DDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
            G+G V L+YE YDE FPI+DGS + A +DE YCLSFVMPNC + L      +R+ RE  G     + E+P GT+H LE  + Y+V + ++ +       R  Q  T+             DGEL  +K    DD R G ESCSC+YGNPCVDEYGC+DWHSR+A+A  NGWKGF
Sbjct:  122 GNGMVKLIYESYDELFPIEDGSTTQANIDEIYCLSFVMPNCLVRLSRHPNPERFQREESGIFDSLVREDPRGTYHDLEKDQTYYVIIEQEADQL-----RRDQEATKALW----------DGELQKQKKADKDDGR-GFESCSCIYGNPCVDEYGCRDWHSRFAIATKNGWKGF 279          
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Aste57867_16892 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7F0_9STRA)

HSP 1 Score: 165 bits (418), Expect = 3.180e-43
Identity = 78/168 (46.43%), Postives = 106/168 (63.10%), Query Frame = 1
Query:  688 GEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
            G+VTL YEMY E+F I +GS+ AA +D+ YCLSFVMP C +HL    P  +   E  G+   ++ ENP GT+HGL+    Y+VY+ ++ +       RM++     + ++G  +  P       + DD R G ESCSCV GNPCVDEYGCKDWH+R+A+A  NGWKGF
Sbjct:  147 GQVTLKYEMYSEQFAIANGSMVAAAIDDAYCLSFVMPQCLIHLSLHDPPTKLELETAGQRNLFVYENPLGTYHGLDADSTYYVYIEQEADQLARDQARMREIA---ATMEGANRGKPM------KMDDGR-GFESCSCVEGNPCVDEYGCKDWHNRFAIATKNGWKGF 304          
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AGU3_9STRA)

HSP 1 Score: 165 bits (417), Expect = 5.310e-43
Identity = 80/168 (47.62%), Postives = 101/168 (60.12%), Query Frame = 1
Query:  688 GEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
            G V L YEMY E+F I  GS +AA VD+ YCLSFVMP C +HL    P  +   E EG +  ++ E+P GT+HGLE    Y+VY+ ++ +        M   R   + ++G       D     +KDD   G ESCSCV GNPCVDEYGCKDWH+RYA+A  NGWKGF
Sbjct:  154 GRVVLKYEMYSEQFDIAQGSTTAAVVDDAYCLSFVMPQCRIHLSEWDPPTKV--EKEGHVDVFVREDPVGTYHGLEADRTYYVYIEQEADQLARDQAAM---RATAATMEGAASITKAD-----KKDDDGRGFESCSCVEGNPCVDEYGCKDWHNRYAIAMKNGWKGF 311          
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WVH3_PHYIN)

HSP 1 Score: 160 bits (406), Expect = 7.560e-43
Identity = 81/170 (47.65%), Postives = 105/170 (61.76%), Query Frame = 1
Query:  682 GDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
            G+G V L+Y+ YDE FPI+DGS + A +DE YCLSFVMPNC + L      +R+ RE  G     + E+P GT+H LE  + Y+V V ++ +       R  Q  T+ ++  G  Q   + G+   R      G ESCSCVYGNPCVDEYGC+DWHSR+AVA  NGWKGF
Sbjct:   37 GNGMVKLIYDSYDELFPIEDGSTTQANIDEIYCLSFVMPNCFVRLSRHPNPERFHREESGIFDSLVCEDPRGTYHNLEKDQAYYVVVEQEADRL-----RRDQEATK-ALWDGDLQKQKKAGKYDGR------GFESCSCVYGNPCVDEYGCRDWHSRFAVATKNGWKGF 194          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.720e-21991.99protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.150e-15973.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.020e-4747.67protein n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Uncharacterized7.510e-4747.67protein n=1 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Hypothetical1.330e-4650.58protein n=1 Tax=Chromulina nebulosa TaxID=96789 Re... [more]
Uncharacterized1.440e-4450.29protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Uncharacterized2.270e-4347.70protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2R... [more]
Aste57867_168923.180e-4346.43protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized5.310e-4347.62protein n=3 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized7.560e-4347.65protein n=1 Tax=Phytophthora infestans TaxID=4787 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1086contigEcto-sp9_F_contig1086:1650..6109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score316.6
Seed ortholog evalue6.7e-84
Seed eggNOG ortholog2880.D7G1U8
EggNOG OGs2B80G@1,2S0QQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004050.1
Exons5
Model size1619
Cds size492
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.7775104-UTR-Ecto-sp9_F_contig1086:1649..18321622928307.7775104-UTR-Ecto-sp9_F_contig1086:1649..1832Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1086 1650..1832 +
1692277829.4418483-UTR-Ecto-sp9_F_contig1086:1649..18321692277829.4418483-UTR-Ecto-sp9_F_contig1086:1649..1832Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1086 1650..1832 +
1622928307.7916095-UTR-Ecto-sp9_F_contig1086:2238..27571622928307.7916095-UTR-Ecto-sp9_F_contig1086:2238..2757Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1086 2239..2757 +
1692277829.4534042-UTR-Ecto-sp9_F_contig1086:2238..27571692277829.4534042-UTR-Ecto-sp9_F_contig1086:2238..2757Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1086 2239..2757 +
1622928307.8690774-UTR-Ecto-sp9_F_contig1086:5684..61091622928307.8690774-UTR-Ecto-sp9_F_contig1086:5684..6109Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1086 5685..6109 +
1692277829.503249-UTR-Ecto-sp9_F_contig1086:5684..61091692277829.503249-UTR-Ecto-sp9_F_contig1086:5684..6109Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1086 5685..6109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928307.80721-CDS-Ecto-sp9_F_contig1086:2757..27931622928307.80721-CDS-Ecto-sp9_F_contig1086:2757..2793Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1086 2758..2793 +
1692277829.4630861-CDS-Ecto-sp9_F_contig1086:2757..27931692277829.4630861-CDS-Ecto-sp9_F_contig1086:2757..2793Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1086 2758..2793 +
1622928307.8251274-CDS-Ecto-sp9_F_contig1086:3140..32851622928307.8251274-CDS-Ecto-sp9_F_contig1086:3140..3285Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1086 3141..3285 +
1692277829.472659-CDS-Ecto-sp9_F_contig1086:3140..32851692277829.472659-CDS-Ecto-sp9_F_contig1086:3140..3285Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1086 3141..3285 +
1622928307.8409233-CDS-Ecto-sp9_F_contig1086:4196..43211622928307.8409233-CDS-Ecto-sp9_F_contig1086:4196..4321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1086 4197..4321 +
1692277829.48235-CDS-Ecto-sp9_F_contig1086:4196..43211692277829.48235-CDS-Ecto-sp9_F_contig1086:4196..4321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1086 4197..4321 +
1622928307.8567-CDS-Ecto-sp9_F_contig1086:5498..56841622928307.8567-CDS-Ecto-sp9_F_contig1086:5498..5684Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1086 5499..5684 +
1692277829.4926748-CDS-Ecto-sp9_F_contig1086:5498..56841692277829.4926748-CDS-Ecto-sp9_F_contig1086:5498..5684Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1086 5499..5684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1086.747.1prot_Ecto-sp9_F_contig1086.747.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1086 2758..5684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1086.747.1

>prot_Ecto-sp9_F_contig1086.747.1 ID=prot_Ecto-sp9_F_contig1086.747.1|Name=mRNA_Ecto-sp9_F_contig1086.747.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=164bp
MYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARE
NEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEEEEQDRERMKQARTR
FSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHS
RYAVAKANGWKGF*
back to top

mRNA from alignment at Ecto-sp9_F_contig1086:1650..6109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1086.747.1 ID=mRNA_Ecto-sp9_F_contig1086.747.1|Name=mRNA_Ecto-sp9_F_contig1086.747.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4460bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1086:1650..6109+ (Ectocarpus species9 EcSCA_722f female)
GCCTCAACAAAGAACGTTACAGCTGGGGGCGCGAAGGTCACAACAGTTGC TGGACAGCACCACAGCTCGTCGAAGGAACCAGAAAACGTGACTATCCAGG CGGATCCCGCCAGTTCTCTTGGACTGTCTTTCGGTATTGGCGGTGTTGTT CGGCAGGCAAGTCCAAGCTACCCATTGTATGAAGTGACTGAACACACCGC GTATCTACAATTCGACAGAATCTCTCCAGTTAAATGGTTACATCATTCCC TTTGGTTCTCTATGAACAAGACGTTCACGTACCCGGCACATAATTGCGTG GTCCCATCCTTGAAACGTAAAACGTTTTAGCAAGGTCTGGGTGATGGCAG GTGGTGCGGTATGAACGGCGTTAAGTACTGTAGTCCTACGTCAACCTAGC TAACTATTTGGCCAAGAATGCAATGAGCGAAATTTTTCAACGTTTTCGCG TACCGACACGGTGTGAGTGTGCTCTATGTGACGCCATGTAGACACTACAT TTTGTGTACATAGCGACAAGCCAAAGACACTGGCCCGCTCTTCTATCTCT CCCGCCCCCTTTTTCACACCCGGCGCGCACATGAACAAGGTGGCGCCCAA AGGACAAGTGGCCGCTCTCGGCGTTCGTGAAGGCTGGCGGTTGACGAACA TCGGCAAAACTGATTTTACGGTAACGGCGACGTCAACACCAAAGCACATT CTCGAAGCCCTCGCTGCTGCCCGCAAGAGGGGCACCACGTACACGCTTGG GTTTTCGACAGGGGGTGCAGATGACGCGCCGAACGGAGTAGTACGTGCCG AGGAACAATCAAATGTAGAGGCTTGTGACGGCAGTAGGGTGGACAATGCG GTCAGCGAGACAGCCGGTGGTGAGGCGGCTACGGCTGGGCCGGCGTCAGG GGGTGAAACAGGAAATAGTGACCAGGTGTGCGTGGAGGGCAAGGAACTAG AAGAAGACCGGAAAAAGGGTGCCTCTGCCGGCGTGGAGATAGGCGAAGAT GGTGAGACGAAGGAGACCGAAGGAAAAGGTGAAGGACAGGTCTTCGAGGG GAAAGATGTTCCATCCTGCAGGGCCGAGACGGGAAGAGGCGATGGAGAGG TGACGCTCATGTACGAGATGTACGACGAAAAGTTTCCCATCAAGGTAAGT AAGTTGGCATAGCGTAGACACGTGATGTACAGACCCTCTCAGAAACTTAG ACATATGCCCATCAAAGTGGAAGGAATCAAGCGAGCCTCAATAAAATGTC CTTCCGACCATCAAAACGCCCAAATATTTCAAGGAGAGCTTGCTGCACAT CCTTGTGGCGACGCGCGTTGTGCGCGATGTACAGAGCCTGTCGACATTTT CTTTTATTTGGGGCTGCCACAACTGTCCCGGTTCAATCACCTGTCAATAT TTTATTGGCAAGGTTTACCATCTGATACTTTACCTAGAAAACAAGACCGA ACGCAGACCTAATGGCTCGCTCAACGTTCGTTCTTCAACAGGATGGTTCC ATCAGTGCCGCCCAAGTTGACGAGACCTACTGCCTGAGCTTCGTGATGCC GAACTGCACACTTCACCTTGGGCCGTTGGGCCCGGCGGACCGATATGCTC GAGAAAATGAAGGGGAGCTTGTGCCCTACCTTGAAGGTAAAGGGCTGTAT CTCCTATACGTGGGAACACGCAACATTAGAATTGTTAGCTGTTCGTATGT CCTACGTAGGGGAGGACCTTGGTATGACGGGTTTTCGAGAAAATAGACCG CTACACACCAGGAACCACTTGTGTAAAATGTTTAGCTTGAAGTGTTTCGT TCGAGGGTGCAATCAGCAAAATACCTAATTGTTGTCCATTCCTAACTGCG TTGTATGCAGGACTTAGAGGTACTTGTACCGACAAGAGCTTTCGAAAACG GTAAGGCACCCGGATTCTAACCCATAGCTACCACCGCCAAGAGTTACTTT TTTATTGCGTTTTTGTCCATGGAACGCAGGTAAGTCTCCGAGGCACATAC ATTTCGCTGTGCACCGTACGAACCGGTTCCGCCTAGGATGATTGGTTTTG TTGTTGCAAACCTGTGCACAACCAAGGCAATCAAGCCAACATAACGTTCT GTTTGCACCGCCCTTTCGAGCTCCTGCGGCTGCCGGACGGTGCAACATCG AGAACCGTTTGCGTTGCCTGCGCGAGACTTTAGAATGCAAAAAAAAAGGA CGGATTTTGTGGCGTCATCCCCGTTCTTTCCGTTGCTCCAAGATACAGCT GCAGAGTGCCTACCGTGACTTTCCCCTCTTGATTGAAGAGCTTCGATCCG GTGTCGCACAGAAGAATTCCTCTTCCACGGTGGCACATGTCAGCAATTCC TCGACGAGTTCAGTCGTCATTGCCTCAATGTATGAATGCACGACACGTTT ATGAAATATTCAGCCTCTACCTGTACGCCATGAAGTTGGGCGTATATCGC GGGGGATTAGCGGGATATGCCAAACTTGAGGTCGTAGTTCCAGCGCCGTC CCCGTCATAACCTCTTCCTTTGTACCACCGCTGCATGATTCCGCCAGAGA ATCCTTCAGGAACATTTCACGGGCTGGAGGACGGGGAGGTTTATTGGGTG TACGTTTCAAGGGATGAAGAGGAGGAGGAGCAAGACAGAGAGAGAATGAA ACAGGCAAGAACCCGCTTCAGCGTTATCTGTTGCAGCCCTACTACACTGC AGTGACGGTTATAGGTGTACAGTAAAAATATGCATATGGCAATACAAAGG GCGGAGGACCTTTCATGAGTTGGATAAACAACACCAGGTAACACACAGAT AGGCGGCCGGGAGAAAGGGCCTGCGCGACAAGCTGCAGTGAAATTCAAGC ATGATTCCGCGTTGAAGTGCCTGGGTAGAGTGAGCAGCTCCGTGGTTGAG ACAAGGATATACTTCAGAAGTATCAATGTGTCTATGAAAACGAACCCCAT CATCGAAGCCGGGCAAACGACGGCGTCCACTCAAAAAAATCCTAACCATG TCGTAAGACGCCCGGCAGTGGAATCAAGACGCGACGACAATGAAGGAAAA CATATATCGACCTTCCTGCCATTCCTCAAGTTCAGCCATCTGTGCATCGA AACCTACTCAAACATCGCCGATAATATTAGTCACACTTATTTTTTTCCCA GAGTATATTTGGAACTCAAGGTCATGCAGTCGCTGCGCAAAGCCCAAGGC CCCACCAAGAAGTACAGCAGTAATGCTGTAAAAGAAAATGAACACCTGAC AAGGTAGCATTCCGCAGCGCTTGTAAGGAAATCGGGGTTCGATTTTCATA ATGAGACACACACATAAATATTTACATCATTGTAGCGAATTTCGGGTAAG AAATAAATCAGGATGCTGGGAAGTTTCAGATTTTGGAATAACGAATTTTG GGGGAAATTTTTGTCTTCGTGAGAGAACGGAATTGAACGAGGGCCGGTGC GGCAGAAAAAAAAAAACAGCTTTATAAGAACAGCTCGGGGCGTCGAAGCA ACACACACCTCCCCAGGCGCGGTGCTCTGCATTCTGCACCACCTCAAAAG AGGTTGTTGATGAGGAGATTGACATATCATATGCTCTGTCTTGTGTATAG TGCTGACCACAGTTTAAACGAGCACATGGCTCTACACGCAGTGTGCAAGA TAGGAGGAGCCAAGATTGCTTGAAAGGAAAGGGCAGGCAAGGCAAGACCG AGGATAGCACGGATAGCACTATGGTTCCTCGAGAACTTATCTTTCTGTTC TCAACCGATTGAAAAGTCACTGGCACACTCGAACAAACGCCGCGGCATCT TGGGTGAAATGATTCCGACGAGAGACCGAACACCACAACAACCAACCAGG TGGTGCAAGGCATGAAGCAAGACTTACCGGAAGACGGCGAATTGGTCAAC CGGAAAGACGACTGGCGGAACGGTCTCGAGAGTTGCAGTTGCGTGTATGG TAACCCTTGCGTTGACGAATATGGCTGCAAGGACTGGCATTCACGCTATG CAGTGGCGAAGGCGAACGGATGGAAGGGCTTCTAGCACCAGCGTTGTGGG CCACCTTGTTCCTCCATGTAGACAATGTGGAGGATAGCGTGGTAGATTTC ATCGACAGCAAGTCGCTCTGTGCAACGCCACTTGGTGCTTTTACCAAGTT GACGAATTCGAAAGCGGTGAACATGAAGAGCTTGGTGAGTTCAAGATGAC CAATACCCTGCCGCTGGCGTTGAGCATATGTTCTGGAAGATATTCGCGAT GGAAGAAATGGTGTTGGATGGTGTTGGTTCCTTTGGAGCGTCTCTACGAA AGGAAATGTTGTAAGATGTATCTGCTCTTCAATACGCTGAACCTTCGCAA GTGGTTACTGTAGTTCACTTCATACATGGCAGCGATTCGAAACTAAATAC GAAAGCGAATGAAACCGATGTATTGCATTGTGGCTATTGGCGTTATTAAG AACGAGAGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1086:1650..6109+

>mRNA_Ecto-sp9_F_contig1086.747.1 ID=mRNA_Ecto-sp9_F_contig1086.747.1|Name=mRNA_Ecto-sp9_F_contig1086.747.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1086:1650..6109+ (Ectocarpus species9 EcSCA_722f female)
ATGTACGAGATGTACGACGAAAAGTTTCCCATCAAGATGTACGAGATGTA
CGACGAAAAGTTTCCCATCAAGGATGGTTCCATCAGTGCCGCCCAAGTTG
ACGAGACCTACTGCCTGAGCTTCGTGATGCCGAACTGCACACTTCACCTT
GGGCCGTTGGGCCCGGCGGACCGATATGCTCGAGAAAATGAAGGGGAGCT
TGTGCCCTACCTTGAAGGATGGTTCCATCAGTGCCGCCCAAGTTGACGAG
ACCTACTGCCTGAGCTTCGTGATGCCGAACTGCACACTTCACCTTGGGCC
GTTGGGCCCGGCGGACCGATATGCTCGAGAAAATGAAGGGGAGCTTGTGC
CCTACCTTGAAGAGAATCCTTCAGGAACATTTCACGGGCTGGAGGACGGG
GAGGTTTATTGGGTGTACGTTTCAAGGGATGAAGAGGAGGAGGAGCAAGA
CAGAGAGAGAATGAAACAGGCAAGAACCCGCTTCAGCAGAATCCTTCAGG
AACATTTCACGGGCTGGAGGACGGGGAGGTTTATTGGGTGTACGTTTCAA
GGGATGAAGAGGAGGAGGAGCAAGACAGAGAGAGAATGAAACAGGCAAGA
ACCCGCTTCAGCGTGGTGCAAGGCATGAAGCAAGACTTACCGGAAGACGG
CGAATTGGTCAACCGGAAAGACGACTGGCGGAACGGTCTCGAGAGTTGCA
GTTGCGTGTATGGTAACCCTTGCGTTGACGAATATGGCTGCAAGGACTGG
CATTCACGCTATGCAGTGGCGAAGGCGAACGGATGGAAGGGCTTCTAGGT
GGTGCAAGGCATGAAGCAAGACTTACCGGAAGACGGCGAATTGGTCAACC
GGAAAGACGACTGGCGGAACGGTCTCGAGAGTTGCAGTTGCGTGTATGGT
AACCCTTGCGTTGACGAATATGGCTGCAAGGACTGGCATTCACGCTATGC
AGTGGCGAAGGCGAACGGATGGAAGGGCTTCTAG
back to top