mRNA_Ecto-sp9_F_contig1086.747.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U8_ECTSI) HSP 1 Score: 620 bits (1598), Expect = 3.720e-219 Identity = 310/337 (91.99%), Postives = 318/337 (94.36%), Query Frame = 1
Query: 181 EVAPKGQVAALGVREGWRLTNIGKTDFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGADDAPNGVVRAEEQSNVEACDGSRVDNAVSETAGGEAATAGPASGGETGNSDQVCVEGKELEEDRKKGASAGVEIGEDGETKETEGKGEGQVFEGKDVPSCRAETGRGDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
+VAPKGQVAALGVREGWRLTNIGK DFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGAD+APNG VRAEEQS VEACDGSRVDNAVSETAGGEAATAGPASGGETGNSDQVCVEGKELE+DRKKGASAGVEIGE+GETKETEGKGEGQVF GKDVPSC+AETGRGDGEVTLMYEMYDEKFPIKDGSISAA++DETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRD+E RMKQ VVQGMKQDLPEDGE VNRKDD RNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF
Sbjct: 60 QVAPKGQVAALGVREGWRLTNIGKNDFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGADEAPNGAVRAEEQSIVEACDGSRVDNAVSETAGGEAATAGPASGGETGNSDQVCVEGKELEQDRKKGASAGVEIGENGETKETEGKGEGQVFGGKDVPSCKAETGRGDGEVTLMYEMYDEKFPIKDGSISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDDEEEKQDRERMKQ------VVQGMKQDLPEDGEFVNRKDDGRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 390
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM1_9PHAE) HSP 1 Score: 466 bits (1199), Expect = 2.150e-159 Identity = 254/346 (73.41%), Postives = 266/346 (76.88%), Query Frame = 1
Query: 160 SPSYPLYEVAPKGQVAALGVREGWRLTNIGK-TDFTVTATSTPKHILEALAAARKRGTTYTLGFSTGGADDAPNGVVRAEEQSNVEACDGSRVDNAVSETAGGEAATAGPASGGETGNSDQVCVEGKELEEDRKKGASAGVEIGEDGETKETEGKGEGQVFEGKDVPSCRAETGR-GDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
+P + +VAPKGQVAALGVREGWRLTNIGK TDFTVTA STPK ILEALAAARKRGTTYTLGFSTGGA +APNGVV EEQS+VEA DGSRVD AVSE GNSD V VEGKE EEDRKKGASAGVEIG+ GETKETEG GEGQVFEGKD PS +AETGR GDGEVTLMYEMYDE FPIK+G ISAA++DETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLE GT VVQGMK+DLPEDGELVNRKDD RNGLESCSCVYGNPCVDEYGCK+WHSRYAVAKANGWKGF
Sbjct: 29 TPGAHVNKVAPKGQVAALGVREGWRLTNIGKKTDFTVTAMSTPKRILEALAAARKRGTTYTLGFSTGGAYEAPNGVVGTEEQSDVEARDGSRVDTAVSEXXXXXXXXXXXXXXXXXGNSDGVRVEGKEQEEDRKKGASAGVEIGDGGETKETEGNGEGQVFEGKDAPSSKAETGRRGDGEVTLMYEMYDENFPIKNGCISAAEIDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEALVHGT-----------------------------------QVVQGMKRDLPEDGELVNRKDDGRNGLESCSCVYGNPCVDEYGCKNWHSRYAVAKANGWKGF 339
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VPD3_9STRA) HSP 1 Score: 175 bits (444), Expect = 1.020e-47 Identity = 82/172 (47.67%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 679 RGDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVP-YLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
R +G V L YEMY E+F I +GS +A VDE YCLSFVMP+C +HL P + A+E++ Y+ E+P+GTFHGLE G+ Y+VY+ ++ E +M+ Q K D +DG G ESCSC+ GNPCVDEYGCKDWH+RYA+A NGWKGF
Sbjct: 82 RQNGHVVLKYEMYSEQFEIANGSTTATVVDEAYCLSFVMPHCRIHLSEWDPPTKVAKESQSATNSVYVLEDPAGTFHGLESGKTYYVYIEQEAEQLAQDQAKMRAIAATMDGAQPSKADKKDDGR----------GFESCSCIEGNPCVDEYGCKDWHNRYAIAMKNGWKGF 243
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0G6_9STRA) HSP 1 Score: 175 bits (444), Expect = 7.510e-47 Identity = 82/172 (47.67%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 679 RGDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVP-YLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
R +G V L YEMY E+F I +GS +A VDE YCLSFVMP+C +HL P + A+E++ Y+ E+P+GTFHGLE G+ Y+VY+ ++ E +M+ Q K D +DG G ESCSC+ GNPCVDEYGCKDWH+RYA+A NGWKGF
Sbjct: 153 RQNGHVVLKYEMYSEQFEIANGSTTATVVDEAYCLSFVMPHCRIHLSEWDPPTKVAKESQSATNSVYVLEDPAGTFHGLESGKTYYVYIEQEAEQLAQDQAKMRAIAATMDGAQPSKADKKDDGR----------GFESCSCIEGNPCVDEYGCKDWHNRYAIAMKNGWKGF 314
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Hypothetical (protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXS3_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.330e-46 Identity = 87/172 (50.58%), Postives = 110/172 (63.95%), Query Frame = 1
Query: 688 GEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVP----YLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
G V L+YE YDE FPI DGS + +DE Y LSFVMPNC +HL P + R+ E EL P Y+EENP+G +HGL EVY+VY+ +D + V++ +K D E + +KDD R +ESCSC+YGNPCVDEYGCKDW++RYA+AKANGWKGF
Sbjct: 38 GLVKLIYETYDELFPITDGSTTHENIDEVYALSFVMPNCRIHLSKYDPKQK--RQLEIELKPLNEIYIEENPTGVYHGLIADEVYYVYIEQDSIQLEL------EKENNAKVIEILKND-----EEIIKKDDGRV-IESCSCIYGNPCVDEYGCKDWNNRYAIAKANGWKGF 195
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6C9_PYTOL) HSP 1 Score: 170 bits (430), Expect = 1.440e-44 Identity = 86/171 (50.29%), Postives = 105/171 (61.40%), Query Frame = 1
Query: 679 RGDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
RG+G V L+YE YDE FPI DGS + A +DE YCLSFVMPNC + L A+R+ REN G + E+P G + L E Y+V V ++ + R Q T+ +KQD KDD R G ESCSC+YGNPCVDEYGCKDWHSR+A+A ANGWKGF
Sbjct: 181 RGNGMVKLIYEQYDELFPIVDGSTTQANIDEVYCLSFVMPNCLVRLSYHPNAERFERENTGTFDSLVREDPRGVYQDLIKDETYYVVVEQEADQL-----RRDQEATKVKWAPEIKQDKLS-------KDDGR-GFESCSCIYGNPCVDEYGCKDWHSRFAIATANGWKGF 338
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2RJ32_PHYPN) HSP 1 Score: 165 bits (417), Expect = 2.270e-43 Identity = 83/174 (47.70%), Postives = 106/174 (60.92%), Query Frame = 1
Query: 682 GDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRK----DDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
G+G V L+YE YDE FPI+DGS + A +DE YCLSFVMPNC + L +R+ RE G + E+P GT+H LE + Y+V + ++ + R Q T+ DGEL +K DD R G ESCSC+YGNPCVDEYGC+DWHSR+A+A NGWKGF
Sbjct: 122 GNGMVKLIYESYDELFPIEDGSTTQANIDEIYCLSFVMPNCLVRLSRHPNPERFQREESGIFDSLVREDPRGTYHDLEKDQTYYVIIEQEADQL-----RRDQEATKALW----------DGELQKQKKADKDDGR-GFESCSCIYGNPCVDEYGCRDWHSRFAIATKNGWKGF 279
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Aste57867_16892 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7F0_9STRA) HSP 1 Score: 165 bits (418), Expect = 3.180e-43 Identity = 78/168 (46.43%), Postives = 106/168 (63.10%), Query Frame = 1
Query: 688 GEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
G+VTL YEMY E+F I +GS+ AA +D+ YCLSFVMP C +HL P + E G+ ++ ENP GT+HGL+ Y+VY+ ++ + RM++ + ++G + P + DD R G ESCSCV GNPCVDEYGCKDWH+R+A+A NGWKGF
Sbjct: 147 GQVTLKYEMYSEQFAIANGSMVAAAIDDAYCLSFVMPQCLIHLSLHDPPTKLELETAGQRNLFVYENPLGTYHGLDADSTYYVYIEQEADQLARDQARMREIA---ATMEGANRGKPM------KMDDGR-GFESCSCVEGNPCVDEYGCKDWHNRFAIATKNGWKGF 304
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AGU3_9STRA) HSP 1 Score: 165 bits (417), Expect = 5.310e-43 Identity = 80/168 (47.62%), Postives = 101/168 (60.12%), Query Frame = 1
Query: 688 GEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
G V L YEMY E+F I GS +AA VD+ YCLSFVMP C +HL P + E EG + ++ E+P GT+HGLE Y+VY+ ++ + M R + ++G D +KDD G ESCSCV GNPCVDEYGCKDWH+RYA+A NGWKGF
Sbjct: 154 GRVVLKYEMYSEQFDIAQGSTTAAVVDDAYCLSFVMPQCRIHLSEWDPPTKV--EKEGHVDVFVREDPVGTYHGLEADRTYYVYIEQEADQLARDQAAM---RATAATMEGAASITKAD-----KKDDDGRGFESCSCVEGNPCVDEYGCKDWHNRYAIAMKNGWKGF 311
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WVH3_PHYIN) HSP 1 Score: 160 bits (406), Expect = 7.560e-43 Identity = 81/170 (47.65%), Postives = 105/170 (61.76%), Query Frame = 1
Query: 682 GDGEVTLMYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYARENEGELVPYLEENPSGTFHGLEDGEVYWVYVSRDEEXXXXXXXRMKQARTRFSVVQGMKQDLPEDGELVNRKDDWRNGLESCSCVYGNPCVDEYGCKDWHSRYAVAKANGWKGF 1191
G+G V L+Y+ YDE FPI+DGS + A +DE YCLSFVMPNC + L +R+ RE G + E+P GT+H LE + Y+V V ++ + R Q T+ ++ G Q + G+ R G ESCSCVYGNPCVDEYGC+DWHSR+AVA NGWKGF
Sbjct: 37 GNGMVKLIYDSYDELFPIEDGSTTQANIDEIYCLSFVMPNCFVRLSRHPNPERFHREESGIFDSLVCEDPRGTYHNLEKDQAYYVVVEQEADRL-----RRDQEATK-ALWDGDLQKQKKAGKYDGR------GFESCSCVYGNPCVDEYGCRDWHSRFAVATKNGWKGF 194 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1086.747.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1086.747.1 >prot_Ecto-sp9_F_contig1086.747.1 ID=prot_Ecto-sp9_F_contig1086.747.1|Name=mRNA_Ecto-sp9_F_contig1086.747.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=164bp MYEMYDEKFPIKDGSISAAQVDETYCLSFVMPNCTLHLGPLGPADRYAREback to top mRNA from alignment at Ecto-sp9_F_contig1086:1650..6109+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1086.747.1 ID=mRNA_Ecto-sp9_F_contig1086.747.1|Name=mRNA_Ecto-sp9_F_contig1086.747.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4460bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1086:1650..6109+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1086:1650..6109+ >mRNA_Ecto-sp9_F_contig1086.747.1 ID=mRNA_Ecto-sp9_F_contig1086.747.1|Name=mRNA_Ecto-sp9_F_contig1086.747.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1086:1650..6109+ (Ectocarpus species9 EcSCA_722f female)back to top |