mRNA_Ecto-sp9_F_contig1048.452.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Match: Glycerophosphocholine (acyltransferase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ84_ECTSI) HSP 1 Score: 583 bits (1502), Expect = 1.120e-199 Identity = 315/344 (91.57%), Postives = 317/344 (92.15%), Query Frame = 1
Query: 1 QFWCMVAIFVMPHSCRLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYPLDPMRGGTAGAEPECQDSIDMGDVGTAMAMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKVVLALMRKIGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSVPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRYWQSMEAESAAKAEALVVKATRQRERERLRSGEDGIAAGGQMLSASSGGSGEDLADDDYEDGEDWEEEADAAPAADEXXXXXXXXXXXXXXXXXXXXDMDGLLGGEVGAAADENPGQEKSKDV 1032
QFWCMVAIFVMPHSCRLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYPLDPMRGGTAGAEPECQD DMGDVGTAM MYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHK+VLALMRK GMFKEDETFDPTTFKTKMIFMGSQLVFTVLVS+PTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRYWQSMEAESAAKAEALVVKATRQRERERLRSGEDGIAAGGQMLSASSGGSGEDLADDDYE XXXXXXXXXXXXXXX DMDGL GGEVGAAADENPGQEKSKDV
Sbjct: 207 QFWCMVAIFVMPHSCRLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYPLDPMRGGTAGAEPECQDGFDMGDVGTAMGMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKIVLALMRKTGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSLPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRYWQSMEAESAAKAEALVVKATRQRERERLRSGEDGIAAGGQMLSASSGGSGEDLADDDYE----------XXXXXXXXXXXXXXXXXXXXXXAEAVGDMDGLFGGEVGAAADENPGQEKSKDV 540
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Match: Glycerophosphocholine (acyltransferase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMU1_9STRA) HSP 1 Score: 244 bits (622), Expect = 2.150e-69 Identity = 110/225 (48.89%), Postives = 152/225 (67.56%), Query Frame = 1
Query: 7 WCMVAIFVMPHSCRLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYPLDPMRGGTAGAEPECQDSIDMGDVGTAMAMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKVVLALMRKIGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSVPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRYWQSME 681
+CMV ++V P SC +K F+F G L+WA+P WRNSLVFHD++K +S ++H FP+ L L+ RW+ G P+C D++ + D G AMA+Y AWQ++YF KTE+ D+P L ADP +QTSLRWLTT N +HK+VL R++ + DETF+P+T KTK+IFM +Q+ FTV+ P P LY S A + +F CA+WN N+YIEVF+RRYW +E
Sbjct: 156 FCMVQLYVFPDSCMGMKLAFLFANGPLIWAIPSWRNSLVFHDMEKTSSVYVHFFPALLTLSTRWHATWQHGAAPPGGAPQCDDTVTLLDFGLAMAVYTAWQIVYFIKTEVVDRPILLADPALQTSLRWLTTDSKNALHKLVLLAARRMRIMARDETFEPSTLKTKIIFMSTQMAFTVVTMAPVPALYASYPAHAAFVLAMFGCAVWNGGNFYIEVFARRYWADLE 380
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Match: Glycerophosphocholine (acyltransferase 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS45_9STRA) HSP 1 Score: 206 bits (525), Expect = 1.480e-55 Identity = 100/222 (45.05%), Postives = 146/222 (65.77%), Query Frame = 1
Query: 1 QFWCMVAIFVMPHSCRLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYPLDPMRGGTAGAEPECQDSIDMGDVGTAMAMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKVVLALMRKIGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSVPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRY 666
Q C++ ++ P +C LLKSIF+ G L +AVP+WRNSLVFHD++K+TS +IH++P L LRWYP P +A A + S+D+ D+ A +YLAWQ++Y+ K EI D+ +L+ADPE+QTSLRWL N +H++VL L R G+ DE FD T KTK IF+ +Q ++T+L +P +Y+S ++ +F A++N +NYYI+VFS RY
Sbjct: 209 QVLCILQLYAFPSNCNLLKSIFLLANGPLAFAVPVWRNSLVFHDLEKITSLYIHVYPGLLLYALRWYPSSP----SAAATLDACGSMDVKDLLPAAVVYLAWQIMYYVKIEILDRARLEADPELQTSLRWLAKDHKNALHRLVLRLTRATGVLAPDERFDHRTLKTKSIFILTQFIYTLLTCLPALVIYHSFQLHVAYGLGMFTVAVFNGANYYIDVFSVRY 426
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Match: Glycerophosphocholine (acyltransferase 1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIY4_THETB) HSP 1 Score: 196 bits (497), Expect = 1.300e-51 Identity = 102/234 (43.59%), Postives = 142/234 (60.68%), Query Frame = 1
Query: 1 QFWCMVAIFVMPHSCRLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYPLDP------MRGGTAGAEPECQDS---IDMGDVG---TAMAMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKVVLALMRKIGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSVPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRY 666
Q C+++++ + +IF G LLWA+P WR S+VFH +DK+TS FIH FP+ L TL WYP P T AE S + VG MA+YL WQVLY++KTE+ D+ K +AD + TSLRWL+ NPMHK+VL+L+R+IG+ E FD +T KTK+IFM +Q V+TV+ +P P +Y+S I+L + +LWN +N+Y +VFSRRY
Sbjct: 191 QALCLISVWTPASATEWHAAIFTLANGPLLWAIPTWRCSMVFHSLDKVTSVFIHAFPAMLTFTLHWYPAVPEGVSLATAATTQWAEYNTMASHFHAPISFVGWFVMPMAIYLVWQVLYYYKTEVRDRSKFEADKTLTTSLRWLSADDKNPMHKLVLSLLRRIGVMGPTEKFDASTVKTKVIFMATQFVYTVITILPIPIIYSSVHLHIALLVALLGVSLWNGANFYFDVFSRRY 424
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Match: Glycerophosphocholine (acyltransferase 1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYG3_9STRA) HSP 1 Score: 184 bits (466), Expect = 3.230e-48 Identity = 94/222 (42.34%), Postives = 133/222 (59.91%), Query Frame = 1
Query: 40 SCRLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWY----PLDPMRGGTAGAEPECQDSIDMGDVGTAMAMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKVVLALMRKIGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSVPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRYWQSMEAESA 693
S L + +FI+ G L+WAV LWRNSLVFHDVD+M+ FIHL P L +++W+ PL G + DS+++ D G A YL WQ LYF KTE+ D+ KLDA P++ TSLRWLTT N VLA+ R+IG+ E +DP T KTK+IF+ Q V+T +PT ++ S + F+F A+ N ++YY EVF++ Y + + ++A
Sbjct: 142 STHLFRVLFIYANGPLVWAVVLWRNSLVFHDVDRMSGVFIHLMPCLLYYSIQWFGCASPLSIFSGSSGQPASGPVDSLELADFGYATIGYLIWQTLYFAKTEVVDREKLDARPDLLTSLRWLTTDKKNGFSLFVLAICRQIGVMGRTEEYDPKTTKTKIIFVTGQFVYTFCTFLPTILIFRSHFLHCLYIQFIFAAAVHNGASYYFEVFAKIYQKKLVPDAA 363
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Match: Glycerophosphocholine (acyltransferase 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCA6_9STRA) HSP 1 Score: 181 bits (459), Expect = 6.060e-47 Identity = 95/211 (45.02%), Postives = 129/211 (61.14%), Query Frame = 1
Query: 40 SCRLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYPLDPMRG--GTAGAEPECQDSIDMGDVGTAMAMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKVVLALMRKIGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSVPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRY 666
S R + +FI+ G L+WAV LWRNSLVFHDVD+M+ FIHL P L +RWY P+ +P DS+D+ D A +YL WQ YF KTE+ D+ KLDA PE+ TSLRWLTT N VL+L R + + E ++ T KTK+IF+ +QLV+T+ PTPFL+ S + + F+F A+ N ++YYIEVF++ Y
Sbjct: 171 SDRFFRVLFIYANGPLVWAVVLWRNSLVFHDVDRMSGVFIHLMPCLLYYAIRWYGCAPLFALPRFPSTDPP-HDSLDVVDFTFATILYLFWQACYFVKTEMFDREKLDARPELLTSLRWLTTDKKNGFSLFVLSLCRAMRVMGPTEEYNSRTTKTKLIFLAAQLVYTLGTFAPTPFLFRSHFVHCAYIQFIFAAAVHNGASYYIEVFAKMY 380
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Match: Transmembrane (protein n=1 Tax=Terrestrivirus sp. TaxID=2487775 RepID=A0A3G4ZKU8_9VIRU) HSP 1 Score: 175 bits (443), Expect = 8.360e-47 Identity = 92/205 (44.88%), Postives = 120/205 (58.54%), Query Frame = 1
Query: 64 FIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYPLDPMRGGTAGAEPECQDSIDM-GDVGTAMAMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKVVLALMRKIGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSVPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRYWQS 675
F+F G L WA+ WRNS VFH VDK+TS +IHLFP++L RWY E S+DM + + +Y WQV Y KTE DK KLD D IQTSLRW+++ N MHK +L ++RK+ + E FD TT KTK IF+ SQ +FT+L +P PF++ S + F+ A++N NYYIEVFS RY S
Sbjct: 20 FMFTNGPLAWAIVTWRNSFVFHSVDKITSVYIHLFPAFLLFCTRWY-----------GNYEVDFSMDMIPTLSWCITLYCMWQVCYILKTEYFDKDKLDNDCTIQTSLRWMSSDTKNSMHKFILRILRKVRIMGPTEEFDATTKKTKFIFVLSQFLFTLLTFIPVPFMFQSFILNCLFLVFLLSIAIYNGGNYYIEVFSSRYEHS 213
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Match: Glycerophosphocholine (acyltransferase 1 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VCE2_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.700e-46 Identity = 95/215 (44.19%), Postives = 126/215 (58.60%), Query Frame = 1
Query: 46 RLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYP-------LDPMRGGTAGAEPE-CQDSIDMGDVGTAMAMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKVVLALMRKIGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSVPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRY 666
RL + +FI+ G LLWAV LWRNSLVFHD+D+M+ FIH+ P L + W+ L P P QDS+D D A+ YL WQVLYF KTE+ D+ LDA P++ TSLRWLTT N +VL L R G+ E +DP T KTK IF+ +QLV+TV+ PTP L+ S + +F+ A+ N ++YY EVF++ Y
Sbjct: 51 RLFRVLFIYANGPLLWAVVLWRNSLVFHDIDRMSGVFIHIMPCLLYYCVHWHGCSSSSMLLHPPPSVNYFLPPSHAQDSLDGVDFAYAIIGYLIWQVLYFVKTEVVDRAALDARPDLLTSLRWLTTDRKNGFSLLVLGLCRYGGIMGPTEAYDPRTTKTKAIFVAAQLVYTVVTFAPTPLLFTSHFLHCMYIQLIFVAAVHNGASYYFEVFAKLY 265
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Match: Glycerophosphocholine (acyltransferase 1 n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CAQ5_9STRA) HSP 1 Score: 176 bits (445), Expect = 3.360e-45 Identity = 94/215 (43.72%), Postives = 126/215 (58.60%), Query Frame = 1
Query: 46 RLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYP-------LDPMRGGTAGAEPE-CQDSIDMGDVGTAMAMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKVVLALMRKIGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSVPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRY 666
RL + +FI+ G L+WAV LWRNSLVFHD+D+M+ FIH+ P L + W+ L P P QDS+D D A+ YL WQVLYF KTE+ D+ LDA P++ TSLRWLTT N +VL L R G+ E +DP T KTK IF+ +QLV+TV+ PTP L+ S + +F+ A+ N ++YY EVF++ Y
Sbjct: 130 RLFRVLFIYANGPLVWAVVLWRNSLVFHDIDRMSGVFIHIMPCLLYYCVHWHGCSSSSMLLHPPPSVNYFLPPSHAQDSLDGVDFAYAIIGYLIWQVLYFVKTEVVDRAALDARPDLLTSLRWLTTDRKNGFSLLVLGLCRYGGIMGPTEAYDPRTTKTKAIFVAAQLVYTVVTFAPTPLLFTSHFLHCMYIQLIFVAAVHNGASYYFEVFAKLY 344
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Match: Glycerophosphocholine (acyltransferase 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B0L6_9STRA) HSP 1 Score: 179 bits (455), Expect = 3.640e-45 Identity = 96/226 (42.48%), Postives = 128/226 (56.64%), Query Frame = 1
Query: 25 FVMPHSCRLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHLFPSWLALTLRWYPLDPMRGGTAGAEPECQDSIDMGDVG--TAMAMYLAWQVLYFFKTEIADKPKLDADPEIQTSLRWLTTSPSNPMHKVVLALMRKIGMFKEDETFDPTTFKTKMIFMGSQLVFTVLVSVPTPFLYNSKWASISLAFFVFLCALWNSSNYYIEVFSRRYWQSMEAESAA 696
F P SC L F + +G L +V +WRNSLVFHDVDK+T+ +IH+ PSWL RW + GT E G G TA YL WQVL++ KTE+ D L++D + QTSLRW+ S +H++VL LMRK + E FDP T KTK+IFM SQ VFT + +PT ++ +++ VF ++N YYIEVFSRRY+ E + A
Sbjct: 200 FFFPRSCTLFHMNFAYAVGPLCCSVIIWRNSLVFHDVDKVTTLYIHILPSWLVYANRW-----LIAGTGSRFEELAQCEAFGTAGLFTAFLGYLFWQVLFYVKTEVVDAAFLNSDKDHQTSLRWMALDDSKAVHRLVLWLMRKYQLMGPKERFDPRTHKTKIIFMASQFVFTAITILPTFLVHKYFLVNLAYVIAVFTAGVYNGGEYYIEVFSRRYYTQFEKTATA 420 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1048.452.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1048.452.1 >prot_Ecto-sp9_F_contig1048.452.1 ID=prot_Ecto-sp9_F_contig1048.452.1|Name=mRNA_Ecto-sp9_F_contig1048.452.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=341bp MVAIFVMPHSCRLLKSIFIFVMGSLLWAVPLWRNSLVFHDVDKMTSCFIHback to top mRNA from alignment at Ecto-sp9_F_contig1048:160..3860+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1048.452.1 ID=mRNA_Ecto-sp9_F_contig1048.452.1|Name=mRNA_Ecto-sp9_F_contig1048.452.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3701bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1048:160..3860+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1048:160..3860+ >mRNA_Ecto-sp9_F_contig1048.452.1 ID=mRNA_Ecto-sp9_F_contig1048.452.1|Name=mRNA_Ecto-sp9_F_contig1048.452.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2046bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1048:160..3860+ (Ectocarpus species9 EcSCA_722f female)back to top |