mRNA_Ecto-sp9_F_contig10450.432.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10450.432.1
Unique NamemRNA_Ecto-sp9_F_contig10450.432.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10450.432.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK33_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 1.760e-84
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 3 
Query:    3 MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVILSVVCWLSAANALISLRMGLWTNSLLLFDAESKLVGQKRSTFIPAPASFREWFGQNDDNSSLP 428
            MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVILSVVCW SAANALISLRMGLW NSLLLFDAESKLV QKRSTFIPAPASFREWFGQND NSS P
Sbjct:   75 MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVILSVVCWFSAANALISLRMGLWMNSLLLFDAESKLVDQKRSTFIPAPASFREWFGQND-NSSQP 215
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BLAST of mRNA_Ecto-sp9_F_contig10450.432.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS41_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.420e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 3 
Query:    3 MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVIL 242
            MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVIL
Sbjct:  180 MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVIL 259
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10450.432.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.760e-8496.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.420e-41100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10450contigEcto-sp9_F_contig10450:1423..3798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size1303
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10450.432.1prot_Ecto-sp9_F_contig10450.432.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10450 2295..3796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.9163957-UTR-Ecto-sp9_F_contig10450:1422..22941622928254.9163957-UTR-Ecto-sp9_F_contig10450:1422..2294Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10450 1423..2294 -
1692277810.7453582-UTR-Ecto-sp9_F_contig10450:1422..22941692277810.7453582-UTR-Ecto-sp9_F_contig10450:1422..2294Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10450 1423..2294 -
1622928255.0823684-UTR-Ecto-sp9_F_contig10450:3796..37981622928255.0823684-UTR-Ecto-sp9_F_contig10450:3796..3798Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10450 3797..3798 -
1692277810.7808654-UTR-Ecto-sp9_F_contig10450:3796..37981692277810.7808654-UTR-Ecto-sp9_F_contig10450:3796..3798Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10450 3797..3798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928255.005919-CDS-Ecto-sp9_F_contig10450:2294..24821622928255.005919-CDS-Ecto-sp9_F_contig10450:2294..2482Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10450 2295..2482 -
1692277810.7534025-CDS-Ecto-sp9_F_contig10450:2294..24821692277810.7534025-CDS-Ecto-sp9_F_contig10450:2294..2482Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10450 2295..2482 -
1622928255.0497909-CDS-Ecto-sp9_F_contig10450:3092..32041622928255.0497909-CDS-Ecto-sp9_F_contig10450:3092..3204Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10450 3093..3204 -
1692277810.7612724-CDS-Ecto-sp9_F_contig10450:3092..32041692277810.7612724-CDS-Ecto-sp9_F_contig10450:3092..3204Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10450 3093..3204 -
1622928255.0664215-CDS-Ecto-sp9_F_contig10450:3667..37961622928255.0664215-CDS-Ecto-sp9_F_contig10450:3667..3796Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10450 3668..3796 -
1692277810.769896-CDS-Ecto-sp9_F_contig10450:3667..37961692277810.769896-CDS-Ecto-sp9_F_contig10450:3667..3796Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10450 3668..3796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10450.432.1

>prot_Ecto-sp9_F_contig10450.432.1 ID=prot_Ecto-sp9_F_contig10450.432.1|Name=mRNA_Ecto-sp9_F_contig10450.432.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=143bp
MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGI
LLFVVGILLEATIGYDTYWALAGVGPVVILSVVCWLSAANALISLRMGLW
TNSLLLFDAESKLVGQKRSTFIPAPASFREWFGQNDDNSSLP*
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mRNA from alignment at Ecto-sp9_F_contig10450:1423..3798-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10450.432.1 ID=mRNA_Ecto-sp9_F_contig10450.432.1|Name=mRNA_Ecto-sp9_F_contig10450.432.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2376bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10450:1423..3798- (Ectocarpus species9 EcSCA_722f female)
AGATGTTCGCCACGATCTTCTTCTCCATCATTAGTTTCTACGCGAAGCAG
GCCTTCAACTATGGCTCGACCAACAACCATCGCACTGCAAGGTTCATGTA
CCACGTTCGATGGATCACCTTCAGCTCGCAGGTAAGAAGGTAGAGAGGGG
TAGGTGTGAGAGACCGGCTGCGCGCGTCTATTATAAGGACCACGGTTTCA
ACGGTTGCGTGTTTTCCGTTGTAGTTGTTTAGCGCGGCAAGTGCGTCATG
ACAGGTCGGTCTGTTGTAGGTGAACGCTTGCCTCTACAGTATTCCAGGTT
TGCCGTTTGAGAGGAATCATGATAGTGCAGCCAGTCCTTTTTCGTGCCTT
GCACCACCTTTCTTTGCCCTGGGTTGAGCGAGCTGTAATACCTTCCTATT
GTACCTTGCGTAAACCCCCACGCGCACCTAACGGTAACTGCTCAACACAC
GCGCCAACCGTTTAATCACACCATGTCCGGCTGCCCTTTCTCTCGCACAC
ACGCGTGCTTCAATTGGACCGATCAACGCCCTTCAACGCCCTCCCCCTCA
CGTGTCGCCGCATGGTTGCGGAAATGTTAATGCTACTGCTGCAGGCGTGC
TACACGATCGGGATCCTCCTGTTCGTGGTCGGCATCCTCCTCGAGGCCAC
CATCGGCTACGACACGTACTGGGCGCTCGCGGGGGTGGGGCCCGTCGTTA
TCCTGAGTGAGTCAAGTCAAAGGACGGTGGAAGGGAAGGGTACCCCCCCC
CCCCTACGTAGAGAGAGGCACGCCGGGGCCCCCGCCCTTTAGCTTGTTGC
GATCGTCCCAGGCGGAGGGAGGGCGGCGGCAGGCATCCGAAATCAGAATT
GACCAAAAGCAAGAGAGAGAGAGGGGGGGGGGGGCGGAGAGAGACCACAC
AGACACAATCATGTCACCGAGTGGGGGGGCACGCGGTTCCAAGGGCGATA
CAGCACGAAAACTATGTTTGTTCGAATCCAAATCGTGCTTGGTCTCGCAA
ACCCATGTCCCCGAACGCTTGCCCCGGCCGCTAAACGTCCATATCTTGCC
GTCACGGGCCATGCCACCCTGCAGTACACTAAATATACGACAATACTGCA
GAACGAGCCACCACTTTAGAACCTGTTTCTTTGCCGAGAATTCTGTTTTT
GTCTGTGGGGTACTGTACTGTGCCCCTACGGCGACTATGTAGGTGTTGTG
TGCCCTTCTTGACTGAGAACCTGTTTTTGTTACGGACAAGATCCTACAGT
AGGTTATTTTAGGCTCAAAACGGCTAAGTTCTTACTACTTTCTACACCGT
TGACGGTGTGTCGCAGGCGTGGTGTGCTGGTTGTCGGCCGCAAACGCCCT
GATCTCCCTGCGGATGGGGCTGTGGACGAACAGTCTTCTGCTGTTTGACG
CCGAATCGAAGCTGGTCGGCCAGAAGCGGTCAACCTTCATCCCGGCCCCT
GCGTCGTTCCGGGAGTGGTTCGGCCAAAACGACGACAACAGCAGCCTGCC
CTAACACAAGCAACGACCATATTATCACCGCTGGCAGAAAAATCATCCCG
AGCTTGGGGGCTCCGTGTGATCGAATCGATCGCTGTTCTTGAGAGCTTGT
TGGCGTTTGCTGCAGCGCTCACAGGATGATGTTTGCCCCAGTGTGCTCAC
GGGCGGGTCTTGTAGACAACACTAATGGCCCGGAAGAGAAACGGCATGTG
TGTGTGGTGTCCAGCTCAACTCGAAGTTTTCCGGAGGAGCAAGGGTGATG
TTGCGAGTGGTAGTGGTAGTGGTAGTGATGGTGACGGTGACGACAAGAAG
GCCAACACGACGATATAAAGGCTGCATTCTCTTTGCTCTCACCTGCTGCA
TGTCCTTACCGTCTCCGGGGAGAATATGGTATGTAAAGAGGCTTTCGATT
TTGCAGGCAGAGAAATTTCAAGCATGTTTGACATTGGGGGACGGGCGACT
TAGCATCGTAGGTCCAAGGGCGTGCCGCTGTTGTTGACGTTTCCAGCGCA
CAGCAGTAGTTGTTGATCGAGAGAGGCGCACACGCGACACTTTCGTCCAT
CATCACGGACGGGCTTTACACCTCCCCTTTCGTCGAATGTGTTGGTGTGC
ATATAGACCCCACACGTGACCACGGCAGAGCCCTCTCTCGCAAGCCTTCA
TTGTTTTTTTGTCACTATTGACTTAAGGGTGGGGCGCACTGACTCAAGCA
ACGTTTTGTCTGGCCATTGTTCTGGGGGAGGAACATACCTGGTAGGCTAA
AGTAACTGTTACGGTGTGCCGGTGGGTACGGAGGAGCAGATTCCGCTGGG
GATTGGAAGGCAGTCGCCGAATGGAACACGTGCAATCTCATGTATCTTGT
CATGGCGGATGTGGGTGGGCGTCTTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10450:1423..3798-

>mRNA_Ecto-sp9_F_contig10450.432.1 ID=mRNA_Ecto-sp9_F_contig10450.432.1|Name=mRNA_Ecto-sp9_F_contig10450.432.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=858bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10450:1423..3798- (Ectocarpus species9 EcSCA_722f female)
ATGTTCGCCACGATCTTCTTCTCCATCATTAGTTTCTACGCGAAGCAGGC
CTTCAACTATGGCTCGACCAACAACCATCGCACTGCAAGGTTCATGTACC
ACGTTCGATGGATCACCTTCAGCTCGCAGATGTTCGCCACGATCTTCTTC
TCCATCATTAGTTTCTACGCGAAGCAGGCCTTCAACTATGGCTCGACCAA
CAACCATCGCACTGCAAGGTTCATGTACCACGTTCGATGGATCACCTTCA
GCTCGCAGGCGTGCTACACGATCGGGATCCTCCTGTTCGTGGTCGGCATC
CTCCTCGAGGCCACCATCGGCTACGACACGTACTGGGCGCTCGCGGGGGT
GGGGCCCGTCGTTATCCTGAGCGTGCTACACGATCGGGATCCTCCTGTTC
GTGGTCGGCATCCTCCTCGAGGCCACCATCGGCTACGACACGTACTGGGC
GCTCGCGGGGGTGGGGCCCGTCGTTATCCTGAGCGTGGTGTGCTGGTTGT
CGGCCGCAAACGCCCTGATCTCCCTGCGGATGGGGCTGTGGACGAACAGT
CTTCTGCTGTTTGACGCCGAATCGAAGCTGGTCGGCCAGAAGCGGTCAAC
CTTCATCCCGGCCCCTGCGTCGTTCCGGGAGTGGTTCGGCCAAAACGACG
ACAACAGCAGCCTGCCCTAAGCGTGGTGTGCTGGTTGTCGGCCGCAAACG
CCCTGATCTCCCTGCGGATGGGGCTGTGGACGAACAGTCTTCTGCTGTTT
GACGCCGAATCGAAGCTGGTCGGCCAGAAGCGGTCAACCTTCATCCCGGC
CCCTGCGTCGTTCCGGGAGTGGTTCGGCCAAAACGACGACAACAGCAGCC
TGCCCTAA
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