prot_Ecto-sp9_F_contig10450.432.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig10450.432.1
Unique Name	prot_Ecto-sp9_F_contig10450.432.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	143

Homology

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BLAST of mRNA_Ecto-sp9_F_contig10450.432.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK33_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 5.390e-89
Identity = 137/142 (96.48%), Postives = 137/142 (96.48%), Query Frame = 0

Query:    1 MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVILSVVCWLSAANALISLRMGLWTNSLLLFDAESKLVGQKRSTFIPAPASFREWFGQNDDNSSLP 142
            MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVILSVVCW SAANALISLRMGLW NSLLLFDAESKLV QKRSTFIPAPASFREWFGQND NSS P
Sbjct:   75 MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVILSVVCWFSAANALISLRMGLWMNSLLLFDAESKLVDQKRSTFIPAPASFREWFGQND-NSSQP 215

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10450.432.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS41_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.620e-45
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query:    1 MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVIL 80
            MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVIL
Sbjct:  180 MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGILLFVVGILLEATIGYDTYWALAGVGPVVIL 259

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10450.432.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10450.432.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	5.390e-89	96.48	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	2.620e-45	100.00	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 60..70
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..36
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 37..59
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..93
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 94..142
None	No IPR available	TMHMM	TMhelix		coord: 69..91
None	No IPR available	TMHMM	TMhelix		coord: 37..59

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10450	contig	Ecto-sp9_F_contig10450:2295..3796 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10450.432.1	mRNA_Ecto-sp9_F_contig10450.432.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig10450 1423..3798 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig10450.432.1 ID=prot_Ecto-sp9_F_contig10450.432.1|Name=mRNA_Ecto-sp9_F_contig10450.432.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=143bp
MFATIFFSIISFYAKQAFNYGSTNNHRTARFMYHVRWITFSSQACYTIGI
LLFVVGILLEATIGYDTYWALAGVGPVVILSVVCWLSAANALISLRMGLW
TNSLLLFDAESKLVGQKRSTFIPAPASFREWFGQNDDNSSLP*