mRNA_Ecto-sp9_F_contig1033.333.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1033.333.1
Unique NamemRNA_Ecto-sp9_F_contig1033.333.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1033.333.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT81_ECTSI)

HSP 1 Score: 407 bits (1046), Expect = 2.850e-129
Identity = 217/222 (97.75%), Postives = 220/222 (99.10%), Query Frame = 1 
Query:    1 MEAQKGGFGRQVALKEREIVILTEEQRELKRDLQNFKADYFSADAEDVIRALRKRQRGLNEQVRYLERQLELAQQSSHVEGGAIEVLEGLLRQRDTDKQLVHGLGLKSLEIGLKIGLLETDAGGKTVEVSRMGQKEQQAVAHLKGRLVKERGIVDARRKTVEAELGRSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLETTTTAVGDRRGLGG 666
            MEAQKGGFGRQVALKEREIVILTEEQRELKRDL+NFKADY+SADAEDVIRALRKRQRGLN+QVRYLERQLELAQQSSHVEGGAIEVLEGLLRQRDTDKQLVHGLGLKSLEIGLKIGLLETDAG KTVEVSRMGQKEQQAVAHLKGRLVKERGIVDARRKTVEAEL RSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLETTTTAVGDRRGLGG
Sbjct: 1032 MEAQKGGFGRQVALKEREIVILTEEQRELKRDLRNFKADYYSADAEDVIRALRKRQRGLNDQVRYLERQLELAQQSSHVEGGAIEVLEGLLRQRDTDKQLVHGLGLKSLEIGLKIGLLETDAGSKTVEVSRMGQKEQQAVAHLKGRLVKERGIVDARRKTVEAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLETTTTAVGDRRGLGG 1253
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BLAST of mRNA_Ecto-sp9_F_contig1033.333.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ1_9PHAE)

HSP 1 Score: 387 bits (993), Expect = 1.020e-125
Identity = 213/244 (87.30%), Postives = 217/244 (88.93%), Query Frame = 1 
Query:    1 MEAQKGGFGRQVALKEREIVILTEEQRELKRDLQNFKADYFSADAEDVIRALRKRQRGLNEQVRYLERQLELAQQSSHVEGGAIEVLEGLLRQRDTDKQLVHGLGLKSLEIGLKIGLLETDAGGKTVEV----------------------SRMGQKEQQAVAHLKGRLVKERGIVDARRKTVEAELGRSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLETTTTAVGDRRGLGG 666
            MEAQKGGF RQVALKEREIVILTEEQR+LKRDL+N KADY+SAD EDVIRALRKRQRGLNEQVRYLERQLELAQQSSHVEGGAIEVLEGLL QRDTDKQLVHGLGLKSLEIGLKIGLLETDAGGKTVEV                      SRMGQKEQQAVAHLKGRLVKERGIVDARRKTVEAEL RSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARL+TTTTAVGDRRGLGG
Sbjct:  427 MEAQKGGFDRQVALKEREIVILTEEQRDLKRDLRNVKADYYSADTEDVIRALRKRQRGLNEQVRYLERQLELAQQSSHVEGGAIEVLEGLLHQRDTDKQLVHGLGLKSLEIGLKIGLLETDAGGKTVEVGGPFERRQWRHAETIRFSRRFVSRMGQKEQQAVAHLKGRLVKERGIVDARRKTVEAELERSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWGRLTAARLDTTTTAVGDRRGLGG 670
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1033.333.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.850e-12997.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.020e-12587.30protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1033contigEcto-sp9_F_contig1033:9286..12458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size667
Cds size666
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1033.333.1prot_Ecto-sp9_F_contig1033.333.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1033 9286..12458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928236.9924335-CDS-Ecto-sp9_F_contig1033:9285..94711622928236.9924335-CDS-Ecto-sp9_F_contig1033:9285..9471Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 9286..9471 -
1692277805.338908-CDS-Ecto-sp9_F_contig1033:9285..94711692277805.338908-CDS-Ecto-sp9_F_contig1033:9285..9471Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 9286..9471 -
1622928237.0134232-CDS-Ecto-sp9_F_contig1033:10276..103721622928237.0134232-CDS-Ecto-sp9_F_contig1033:10276..10372Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 10277..10372 -
1692277805.3464398-CDS-Ecto-sp9_F_contig1033:10276..103721692277805.3464398-CDS-Ecto-sp9_F_contig1033:10276..10372Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 10277..10372 -
1622928237.029269-CDS-Ecto-sp9_F_contig1033:10955..111531622928237.029269-CDS-Ecto-sp9_F_contig1033:10955..11153Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 10956..11153 -
1692277805.356543-CDS-Ecto-sp9_F_contig1033:10955..111531692277805.356543-CDS-Ecto-sp9_F_contig1033:10955..11153Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 10956..11153 -
1622928237.0414069-CDS-Ecto-sp9_F_contig1033:11881..120231622928237.0414069-CDS-Ecto-sp9_F_contig1033:11881..12023Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 11882..12023 -
1692277805.3638752-CDS-Ecto-sp9_F_contig1033:11881..120231692277805.3638752-CDS-Ecto-sp9_F_contig1033:11881..12023Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 11882..12023 -
1622928237.0522444-CDS-Ecto-sp9_F_contig1033:12414..124581622928237.0522444-CDS-Ecto-sp9_F_contig1033:12414..12458Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 12415..12458 -
1692277805.371652-CDS-Ecto-sp9_F_contig1033:12414..124581692277805.371652-CDS-Ecto-sp9_F_contig1033:12414..12458Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1033 12415..12458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1033.333.1

>prot_Ecto-sp9_F_contig1033.333.1 ID=prot_Ecto-sp9_F_contig1033.333.1|Name=mRNA_Ecto-sp9_F_contig1033.333.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=222bp
MEAQKGGFGRQVALKEREIVILTEEQRELKRDLQNFKADYFSADAEDVIR
ALRKRQRGLNEQVRYLERQLELAQQSSHVEGGAIEVLEGLLRQRDTDKQL
VHGLGLKSLEIGLKIGLLETDAGGKTVEVSRMGQKEQQAVAHLKGRLVKE
RGIVDARRKTVEAELGRSLPHGMRAFERVSRTIQRLCNGYTSLPGLVEWG
RLTAARLETTTTAVGDRRGLGG
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mRNA from alignment at Ecto-sp9_F_contig1033:9286..12458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1033.333.1 ID=mRNA_Ecto-sp9_F_contig1033.333.1|Name=mRNA_Ecto-sp9_F_contig1033.333.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3173bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1033:9286..12458- (Ectocarpus species9 EcSCA_722f female)
ATGGAGGCGCAGAAGGGTGGCTTCGGTCGGCAGGTTGCCCTCAAGTGAGC
CGCAAGCCGAGTCGAACCTGCTGAAAAGGCCAGATTTTCGTGTCGTGAAA
GCATGCACGTTCGTAAGTGCATCTCACTGCTACAGTCGCCGACATCCAGT
CTCAAGGTCGCGCTCGACGCCCCGGTTGAACTGGACTGCCTGTGATTACA
GGTCAAGCGTGTTTCCGCAGGCACCACACCCAACATGAGAGGAATACCCG
GTTCAGCCATTCTCTTCTTCCCTGTTACAGCACATCATAACACCCCGACA
GCAAGCACAACGGTAGTCGTCGACTGCAGTAGATCTTCTGGCGCGGTAGA
CCCGAAACGCCATGTGCACGTGTGCGATCTAAAGTGCACCATGGTTTTCC
TCCGCGCCGCTTCCTCCGTCTTTCTCCTGGTAAAGGGAACGAGAGATTGT
GATCCTCACCGAAGAACAGCGCGAACTCAAGCGCGACCTGCAGAATTTCA
AGGCGGACTACTTTAGCGCGGACGCCGAAGACGTCATTCGAGCGTTAAGG
AAGAGGCAGCGCGGGCTCAATGAGCAGGTGAAACGATAAAGCTTGTATGA
GGTGTGTAGATCGGCCGTACGTGAGAATACCCTTTCTCTGCTACCAGTAA
GGGTCCCTGAAGTGGTGAATAACCGTTCACCAGCGGAGGCATTTCACTCT
TTTCTTATCAATGTGGCGAGGAATTGCCAAGCGTGGCCGGCGTTGGTCGG
CCTTGCTACTTTTTATGAAAGATCAAAGGTGAGAGTGAGCCTCGGGGCAC
TCTTTCAACCTCCGGCAGATCACAGCAGGCGGAGGATCTTTCTTTGTAAA
CATCTTCAGACCCGGGGAACATGGTTCGTGGGGTCTCGTATGTGCGTCAC
TGTACCACTGTAGGAAGATACCTATATCCTGATTTCCACATACGTAGGGG
AAAAACTGGTTGCGGTGCTGGAGGTATGCTCTTCAGCTTTGTTTATCCCT
GTGCGGTGGCACCTGGCAACACAGCCAATCCTCTATCTGCCTACCTGCTA
GGTACTTCGTAATAGTTTGTAGTACATCTCCGAAGACGCGACAGTCGTGA
TAAGTGCGTTTCCCCTTTTTACGAAACGGTTTCCGCCGAAGCTGGCATCC
TATCGTATTTCCTACGTCCTTCCGCGCCAAAGCACTACGCCGACGAACGG
CCATCCGAAACACGCTCCGGCACTGTACTATTCGGTCTGCATGTCTGCCG
TTTGCGTTGGGGTCCTCCGGCCACAATTGAACCTTGTACGGTTTTGTTCC
CTCAGGTGAGGTACCTCGAGCGGCAGCTCGAACTTGCACAGCAGTCTTCG
CATGTGGAGGGCGGCGCCATCGAGGTGCTCGAGGGGCTCCTCCGTCAGAG
GGACACGGACAAGCAGCTGGTCCATGGCTTGGGCCTTAAGAGTCTGGAAA
TCGGGCTCAAGATTGGGCTGCTGGAGACAGACGCCGGCGGCAAGACTGTG
GAGGTGGGTGGGCCTTGTTGAGCGCGTGAAAGCTTGCAGGTTTCTTCGCT
CCCACTGGTCTTGTTGCAATGGGATAGAAATGAGATGAACGTCCTCGTCG
CGGAAGAAACAAAAAGGACGATATGAACAAAGCAAAACCAAGCAAGTCGA
TAGCGTCTATGCACGCATCCTTGCTATTCTATGCATAACTCGCGGAGATG
TGAAATATTGTCCCCCTCAAGCTGTGCTGGCAGAGACGATACGGTTCTCC
CGGCGGTTTGTAAGTAGCACTCATCAGTGGGTCCTCTTCGGCAAATACGC
CAATGGACCTTCGGTCTTCCTAACCTTCAAGGTGTCCTCGTTTATTATCT
TGAAAGAACCGGATTCAAACAACCAGCTTCGCCAACAGGTGGTGTCTTTC
AGCAATAGACACCACCGCGTACTAAAATATCAAGCATTGTCAATGGCCGA
GCAACAAGCACAAAACGATACCGTTACGACGTTTCCGAACCCCGACCGCC
CCCGTTCCCCGCTCTTCCATCACCGTCCGTAACGGTGCTCTATTCATGCC
GGTTGGCTTTCTTTGGACGACGACTCAAAACACCAGGTAAGCCGCATGGG
CCAAAAGGAGCAGCAAGCCGTGGCTCACCTCAAGGGGCGCTTGGTAAAGG
AACGGGGGATTGTCGACGCCAGAAGAAAGACGGTGAGTTGTTCTATCTAT
GACCCGCCGCGCCGGCATTCCGCACGGCGGTATGTAGTAGTCGTAGCCTA
AAGTTTGGTGCTACAGTAGCACACGCTCACGGACCTCGTGAGCTTTCAAG
CGTGCGATCCCCCACCGCCCGGCTCCTCGACAACTGGGATGCATGGCTAA
CTTTTTCACGTTTGAATAACTATCACAGAGCACGCCGACACCCCGACTAA
ACTTGTTTCCATCTTGAAGACGAGAATGTGGAAGAGATGTTGTCGCCTGG
TAGCTCCGAACGCCATACGTTTCGACGTATTTTGCAACCCTCCGGTTGTT
ATAACGATCGTGGTGCAAAGCCTGTGAATGGCACCTACACAATAGCGGTA
TATTTTAAGTTGAACACAAGTTGACCCTACTCAAATTGGAAGACTGCTGT
GGCAAGTGCATTTCGACCTGGGAAAGGGTAGAATAGCACACACCAAGGGG
GCACGGTGAATAGTCTACACCGTTAGTTTGACGACATGGCGAATGACTCG
CGAATCTTTACTCAACACTTCTGTCTGTGCTGTTCAAGCCTATCCAAAGC
AAGACAGCGTTTGTTGCCATCCCCTCTCCCCCTTCCTCCCGGCAAAGGTC
GCCCGAAAAGTCACAATCAACAACTACACGTCTTGCGTCGAACGCGTCCG
GGATCGCTTATAATATGGGCGTCCAACATTGGCATGTTTTTGAATGTTGG
CCGTCTTGCTTTCCAGTAGCTCGCAAAAAAACTCAACCCTCTCCACTGCC
GTTGTTGTCACTCCCACCCCCGACACTGCTTGTGTAGGTAGAGGCTGAGC
TGGGGCGCTCTCTTCCACACGGCATGCGCGCGTTCGAGCGAGTCAGCCGG
ACGATCCAACGCCTCTGCAACGGGTACACCTCTCTCCCCGGGCTGGTCGA
GTGGGGCCGCCTGACCGCCGCTCGCCTCGAGACGACGACAACTGCGGTCG
GGGACAGACGCGGTCTCGGAGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1033:9286..12458-

>mRNA_Ecto-sp9_F_contig1033.333.1 ID=mRNA_Ecto-sp9_F_contig1033.333.1|Name=mRNA_Ecto-sp9_F_contig1033.333.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1332bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1033:9286..12458- (Ectocarpus species9 EcSCA_722f female)
ATGGAGGCGCAGAAGGGTGGCTTCGGTCGGCAGGTTGCCCTCAAATGGAG
GCGCAGAAGGGTGGCTTCGGTCGGCAGGTTGCCCTCAAGGAACGAGAGAT
TGTGATCCTCACCGAAGAACAGCGCGAACTCAAGCGCGACCTGCAGAATT
TCAAGGCGGACTACTTTAGCGCGGACGCCGAAGACGTCATTCGAGCGTTA
AGGAAGAGGCAGCGCGGGCTCAATGAGCAGGGAACGAGAGATTGTGATCC
TCACCGAAGAACAGCGCGAACTCAAGCGCGACCTGCAGAATTTCAAGGCG
GACTACTTTAGCGCGGACGCCGAAGACGTCATTCGAGCGTTAAGGAAGAG
GCAGCGCGGGCTCAATGAGCAGGTGAGGTACCTCGAGCGGCAGCTCGAAC
TTGCACAGCAGTCTTCGCATGTGGAGGGCGGCGCCATCGAGGTGCTCGAG
GGGCTCCTCCGTCAGAGGGACACGGACAAGCAGCTGGTCCATGGCTTGGG
CCTTAAGAGTCTGGAAATCGGGCTCAAGATTGGGCTGCTGGAGACAGACG
CCGGCGGCAAGACTGTGGAGGTGAGGTACCTCGAGCGGCAGCTCGAACTT
GCACAGCAGTCTTCGCATGTGGAGGGCGGCGCCATCGAGGTGCTCGAGGG
GCTCCTCCGTCAGAGGGACACGGACAAGCAGCTGGTCCATGGCTTGGGCC
TTAAGAGTCTGGAAATCGGGCTCAAGATTGGGCTGCTGGAGACAGACGCC
GGCGGCAAGACTGTGGAGGTAAGCCGCATGGGCCAAAAGGAGCAGCAAGC
CGTGGCTCACCTCAAGGGGCGCTTGGTAAAGGAACGGGGGATTGTCGACG
CCAGAAGAAAGACGGTAAGCCGCATGGGCCAAAAGGAGCAGCAAGCCGTG
GCTCACCTCAAGGGGCGCTTGGTAAAGGAACGGGGGATTGTCGACGCCAG
AAGAAAGACGGTAGAGGCTGAGCTGGGGCGCTCTCTTCCACACGGCATGC
GCGCGTTCGAGCGAGTCAGCCGGACGATCCAACGCCTCTGCAACGGGTAC
ACCTCTCTCCCCGGGCTGGTCGAGTGGGGCCGCCTGACCGCCGCTCGCCT
CGAGACGACGACAACTGCGGTCGGGGACAGACGCGGTCTCGGAGGGGTAG
AGGCTGAGCTGGGGCGCTCTCTTCCACACGGCATGCGCGCGTTCGAGCGA
GTCAGCCGGACGATCCAACGCCTCTGCAACGGGTACACCTCTCTCCCCGG
GCTGGTCGAGTGGGGCCGCCTGACCGCCGCTCGCCTCGAGACGACGACAA
CTGCGGTCGGGGACAGACGCGGTCTCGGAGGG
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