mRNA_Ecto-sp9_F_contig1030.309.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 587 bits (1514), Expect = 2.260e-208 Identity = 386/403 (95.78%), Postives = 394/403 (97.77%), Query Frame = 1
Query: 1 MELVELDEHGKDKYGISRGPIPIINAAGRGLSKIVRKLVEQGHDVSLTNDAGFTALHTAAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHAKANPLLTWSSESSGTSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAALYGQVDIMSMLMDAGVVDPVGLALLAAVGGGKEAAVGFLLRQQEERWQTCYVNIARDDDGLTALLWSFRGTNNKSCNPRITRRLVDAGADTTSAVQLRAERSRTCINVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLQAVAVHAVSWMWPSDAPLLARPANSPRTAKHSPTPLTTMLPVLRRRARRRALLWDTLFRWA 1209
MELVELDEHGKDKYGISRGPIPIINAAGRGLSKIVRKLVEQGHDVSLTNDAGFTALHTAAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHAKANPLLTWSSESSG SFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAA+YGQVDIMSMLMDAGVVDPVGLALLAAVG GKEAAVGFLLRQQEERWQT YVNIARDDDGLTALLWSFRG NK CNPRITRRLVDAGADTTSAVQLRA+RSRTC+NVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLL+ VAVHAVSW+WPSDAPLLARPANSPRTAKHSPT LTT+LPVLRRRA RRALLWDTLFR++
Sbjct: 1 MELVELDEHGKDKYGISRGPIPIINAAGRGLSKIVRKLVEQGHDVSLTNDAGFTALHTAAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHAKANPLLTWSSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTSYVNIARDDDGLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYS 403
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI1_9PHAE) HSP 1 Score: 406 bits (1043), Expect = 8.570e-138 Identity = 217/267 (81.27%), Postives = 225/267 (84.27%), Query Frame = 1
Query: 412 LHAKANPLLTWSSESSGTSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGL-DALRVAALYGQVDIMSMLMDAGVVDPVGLALLAAVGGGKEAAVGFLLRQQEERWQTCYVNIARDDDGLTALLWSFRGTNNKSCNPRITRRLVDAGADTTSAVQLRAERSRTCINVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLQAVAVHAVSWMWPSDAPLLARPANSPRTAKHSPTPLTTMLPVLRRRARRRALLWDTLFRWA 1209
LHAKANPLLT SSE SG SFVPLEVAAQTGRSAVV ELLREFGIRCCGGPSG L DALRVAA+YGQVDIMS++M AGVVDPVGLALLAAVG GKEAAVGFLLRQQ+ERWQT YVN A DDDGLTALLWSF G NNK CNPRITRRLVDAGADTTS VQLRAERSRT +N+TPLEYVN EATRRVLLQAVAVHAVSWMWPSD P+LARPANSPRT KHSPTPL+TML VLRRRAR RA LWDTLFRWA
Sbjct: 32 LHAKANPLLTRSSECSGRSFVPLEVAAQTGRSAVVRELLREFGIRCCGGPSGRLLDALRVAAVYGQVDIMSIIMGAGVVDPVGLALLAAVGSGKEAAVGFLLRQQQERWQTSYVNTACDDDGLTALLWSFGGNNNKPCNPRITRRLVDAGADTTSTVQLRAERSRTRVNMTPLEYVN---------------------EATRRVLLQAVAVHAVSWMWPSDDPVLARPANSPRTTKHSPTPLSTMLTVLRRRARTRASLWDTLFRWA 277
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 177 bits (450), Expect = 9.560e-48 Identity = 121/273 (44.32%), Postives = 163/273 (59.71%), Query Frame = 1
Query: 412 LHAKANPLLTWSSESSGTSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAALYGQVDIMSMLMDAGVVDPVGLALLAAVGGGKEAAVGFLLRQQEERW---QTCYVNIARDDDGLTALLWSFRGTNNKSCNPRITRRLVDAGADTTSAVQLRAERSRTCINVTPLEYVNDWALRETN--GDHPATDEQLLRLEATRRVLLQAVAVHAVSWMWPSDAPLLARPA--NSPRTAKHSPTPLTTMLPVLRRRARRRALLWDTLFRWA 1209
L AKA+PLLT + SG +F+PL+ AA+ G VV+EL+R+ GI CGG SGG+ AL+ AA + ++IM +L +AGVVD GLAL+ A G G E + FLL Q R + YVN RD G+T LLW + PR+ R LV+AGADTTS V +R + +++TPL + + G PA+ EQL +LEA RR+LL+ AVHAVSW+WPSD + R A + RT S T +T + V RRRAR R + L R++
Sbjct: 168 LLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDT-GLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNT-RDRGGVTPLLWGIQ-----HYRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAIS-TAVTLPMLVTRRRARGRKVPLAALLRYS 432
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 174 bits (441), Expect = 1.110e-45 Identity = 155/408 (37.99%), Postives = 208/408 (50.98%), Query Frame = 1
Query: 10 VELDEHGKDKYGISRGPIPIINAAGRGLSKIVRKLVEQGHDVSLTNDAGFTALH--TAAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHAKANPLLTWSSESSGTSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAALYGQVDIMSMLMDAGVVDPVGLALLAAVGGGKEAAVGFLLRQQEERW----QTCYVNIARDDDGLTALLWSFRGTNNKSCNPRITRRLVDAGADTTSAVQLRAERSRTCINVTPLEYVNDWALRETNGD-HPATDEQLLRLEATRRVLLQAVAVHAVSWMWPSDAPLLARPANSPRTAKHSPTP-LTTMLPVLRRRARRRALLWDTLFRWA 1209
VE+D+ ++ YG + P++ A G S+I + L+++G +VS+ + GFTALH A XXXXXXXXXXXXX L ANPLL +S T+ VPL++AA+ G + VV EL++E GI C S G AL AA +DIM++L +AGVVD G AL A G G EA+V FLLR + + + Y+N ARD +G T L+ +G +++ PRI R LVDAGADTTS VQ+ + N TPL + ++ D PAT E L RLEA R+LL+ AVHAVSW+WPS AP + R + T P P L MLP+L+RR +RR L TL R++
Sbjct: 130 VEIDQ--RNSYGAT----PLMMAVHNGHSRIAKMLIKKGANVSIADKRGFTALHFCCAREEDDAIVKLLAKAGADLDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTALHIAAEEGQVAVMRELLRGNANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDT-GKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLN-ARDVNGYTPLVVCTQGCFSQA--PRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGR---ATETDPEPPLPALKLMLPILKRRTKRRCGLVATLLRYS 524
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Match: EsV-1-199 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 172 bits (435), Expect = 1.470e-45 Identity = 121/272 (44.49%), Postives = 161/272 (59.19%), Query Frame = 1
Query: 412 LHAKANPLLTWSSESSGTSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAALYGQVDIMSMLMDAGVVDPVGLALLAAVGGGKEAAVGFLLRQQEERWQTCYVNIARDDDGLTALLWSFRGTNNKSCNPRITRRLVDAGADTTSAVQLRAERSR-TCINVTPLEYVNDWALRETNGD-HPATDEQLLRLEATRRVLLQAVAVHAVSWMWPS-DAPLLARPANSPRTAKHSP---TPLTTMLPVLRRRARRRALLWDTLFRWA 1209
L AKANPLL S G S+VPLE+AA G V E++R+ GIR CGGPSGG++ALR AA ++ M++L+DAG V G AL+ A G+ AV FLLR+++ YVN RD G T ++ + + C+P+I R LVDAGA+TT AV + R + TPL + LRE D AT EQL RL+ TR +L +A AVHAVSW+W S + P +A+ A +T S TPL M P+LRR+ R +L TLFR++
Sbjct: 165 LRAKANPLLC-SHTPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQAD-ADAYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTR-LLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFRYS 433
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 172 bits (435), Expect = 2.030e-45 Identity = 118/271 (43.54%), Postives = 158/271 (58.30%), Query Frame = 1
Query: 412 LHAKANPLLTWSSESSGTSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAALYGQVDIMSMLMDAGVVDPVGLALLAAVGGGKEAAVGFLLRQQEERWQT---CYVNIARDDDGLTALLWSFRGTNNKSCNPRITRRLVDAGADTTSAVQLRAERSRTCINVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLQAVAVHAVSWMWPSDAPLL--ARPANSPRTAKHSPTPLTTMLPVLRRRARRRALLWDTLFRWA 1209
L AKA+PLLT +S+S F+PL+VAAQ G VV+EL+R+ GI CGG SGG +ALR AAL+ ++DIM++L DAGVVD GLAL+ A G G EA + FLL Q R T Y+N + GLT+LL + C PR+ + LV+AGADTTS V + + ++TPL L P T E+ +LE RR+LL+ AVHAVSW+WPSD P + A + RT S ++ ++ RR R R L L R++
Sbjct: 168 LLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDT-GLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTL-NGVGLTSLLDGIQ-----RCRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLT--MCLLGGRSAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYS 429
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 168 bits (426), Expect = 3.380e-44 Identity = 118/272 (43.38%), Postives = 158/272 (58.09%), Query Frame = 1
Query: 418 AKANPLLTWSSESSGTSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAALYGQVDIMSMLMDAGVVDPVGLALLAAVGGGKEAAVGFLLRQQE--ERWQTCYVNIARDDDGLTALLWSFRGTNNKSCNPRITRRLVDAGADTTSAVQLRAERSRTCINVTPLEYVNDWALRETNGDHPATDEQLLR-LEATRRVLLQAVAVHAVSWMWPSDAPLLARPAN---SPRTAKHSPTP--LTTMLPVLRRRARRRALLWDTLFRWA 1209
AKANPLLT + +PL+ AAQ GR VV ELL+ FGIR CGG +GG+ AL++AA+ +D+M L AGVVD G+AL+ A G V FLL+QQ ++ YV+ RD G T L+ + N+SC+P++ R LVDAGADTTS V+ + + TPL + ALR A ++LLR LE RR+LL+ AVHA SW+W + P + PA + T S T L T+LP+LRRRAR R + +L R+A
Sbjct: 169 AKANPLLT--RVNLAWQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDT-GIALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATE-ALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYA 436
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI) HSP 1 Score: 139 bits (351), Expect = 6.500e-34 Identity = 98/226 (43.36%), Postives = 130/226 (57.52%), Query Frame = 1
Query: 454 SSGTSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAALYGQVDIMSMLMDAGVVDPVGLALLAAVGGGKEAAVGFLLRQQ--EERWQTCYVNIA-RDDDGLTALLWSFRGTNNKSCNPRITRRLVDAGADTTSAVQLRAERSRTCINVTPLEYVND--WALRETNGDHPATDEQLLRLEATRRVLLQAVAVHAVSWMWPSDAPLLARPANS-PRTA 1113
SSG VPL+VAA +G S VV L++E GI+ C + G AL +AA +D +++L AG VD G AL+ A EA+ LRQ+ EE+ Y +I R GLTAL++S + +++ PRI R L++AGADTTS ++ N TPL W NG+ PAT+E L RLEA RR+LL+A AVHAVSW+WPSDA + A PR A
Sbjct: 165 SSGFPGVPLDVAASSGHSGVVRHLVQELGIKGCNPENAGKQALLLAASKRDLDTLAILTGAGAVDTSGSALMCAA----EASFKHFLRQRLKEEKGGVEYASINDRISSGLTALVFSIQRCLSQT--PRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGE-PATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEKWPRAA 383
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.070e-32 Identity = 92/214 (42.99%), Postives = 125/214 (58.41%), Query Frame = 1
Query: 418 AKANPLLTWSSESSGTSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAALYGQVDIMSMLMDAGVVDPVGLALLAAVGGGKEAAVGFLLRQQE------ERWQTCYVNIARDDDGLTALLWSFRG-TNNKSCNPRITRRLVDAGADTTSAVQLRAERSRTCINVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLQAVA 1038
AKANPLLT + S G +FVPL+ AA+ G++ VV EL+++ I+ CGG SGG+ ALR+AAL VD+MS+L DAGV+D G AL+ A G EA V LL+Q+ E + YVN D G T LL S G C+PR+ R LVDAGADT SAV L+ + +VTP+++ +G A ++ + +L A R+ Q A
Sbjct: 172 AKANPLLTKPTPS-GVTFVPLDTAAEYGQTEVVRELIKQVSIKGCGGASGGVYALRLAALSQNVDVMSVLADAGVMDT-GEALITAAGRNDEAGVKLLLQQRHGTSAGGELYM--YVNDTHDLVGRTPLLCSIDGGMAGFRCSPRVVRLLVDAGADTVSAVPLKGTAGQIGRSVTPIDFATCSLHENMDGGKTAMEKHVHKLRAIHRLFSQVEA 381
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ3_ECTSI) HSP 1 Score: 137 bits (344), Expect = 2.630e-32 Identity = 109/267 (40.82%), Postives = 147/267 (55.06%), Query Frame = 1
Query: 424 ANPLL-TWSSESSGTSFV--PLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAALYGQVDIMSMLMDAGVVDPVGLALLAAVGGGKEAAVGFLLRQQEERWQTCYVNIARDDDGLTALLWSFRGTNNKSCNPRITRRLVDAGADTT--SAVQ--LRAERSRTCINVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLQAVAVHAVSWMWPSDAPLLARPANSPRTAKHSPTPLTTMLPVLRRRARRRALLWDTLFR 1203
ANP L + ++ G +V PL+ A++ G +VV ELL G++ CGGPS G DAL +AA +V +++ML DAGVVD G A++AA G G+EA+V FLL+Q+ + Y N RD+ G T + G PRI R L+DAGAD T S VQ LR + R T L+ V + PATD+Q+LRL+A RR+LLQ AV A+SW WP P + + + A P L +P RR R +L LFR
Sbjct: 195 ANPTLGSMNTRMDGLKWVCLPLDAASERGHESVVRELLN-LGLKACGGPSRGRDALFMAAQDNRVGVLTMLRDAGVVDR-GKAIVAAAGFGREASVRFLLKQERATTRIDYANT-RDEAGRTLFYRAAWGAY-----PRIGRWLLDAGADETLTSVVQPFLRYDNMR--FEDTALKLVLRSLSSKQYRFEPATDDQMLRLQAFRRLLLQIDAVRAISWPWPIPVPSIPQGVSGGTVATSKPVKL---MPTKWRRTGSRHVLAAQLFR 448 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1030.309.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1030.309.1 >prot_Ecto-sp9_F_contig1030.309.1 ID=prot_Ecto-sp9_F_contig1030.309.1|Name=mRNA_Ecto-sp9_F_contig1030.309.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=403bp MELVELDEHGKDKYGISRGPIPIINAAGRGLSKIVRKLVEQGHDVSLTNDback to top mRNA from alignment at Ecto-sp9_F_contig1030:8366..9574+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1030.309.1 ID=mRNA_Ecto-sp9_F_contig1030.309.1|Name=mRNA_Ecto-sp9_F_contig1030.309.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1209bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1030:8366..9574+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1030:8366..9574+ >mRNA_Ecto-sp9_F_contig1030.309.1 ID=mRNA_Ecto-sp9_F_contig1030.309.1|Name=mRNA_Ecto-sp9_F_contig1030.309.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2418bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1030:8366..9574+ (Ectocarpus species9 EcSCA_722f female)back to top |