mRNA_Ecto-sp9_F_contig1.1.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1.1.1
Unique NamemRNA_Ecto-sp9_F_contig1.1.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Integrase (n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GFX5_9GAMM)

HSP 1 Score: 283 bits (725), Expect = 9.060e-93
Identity = 147/263 (55.89%), Postives = 189/263 (71.86%), Query Frame = 1
Query:    1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLT 789
            +AK GQARVL P Q+ +LF  IR HRHPEKN AIMQ+SF LGLRAQEI+LLQIKEVAKL        + F+L +I+ LPA+ TKGANA        +R+  +V+F+ D+F + V ++    +AG  + PE +YP   KRSG SRDLP+ D +L++AL  YL++RL  +P  K SDPLF+TQKG  Y+PN+LQ+HM LML GW GIE ASSHSGRR+  TDVIH QGK +KVAQ++ GHK  STT++Y EPPEE ++ AL  L+
Sbjct:    1 MAKVGQARVLSPDQMQQLFDAIRSHRHPEKNIAIMQISFKLGLRAQEIALLQIKEVAKLSGPPGQANQTFQLYDIMALPAAITKGANATGRSRSIYKRR--SVRFSVDQFAQTVRQIEALVKAGAEIHPEDFYPPVEKRSGHSRDLPMVDPDLRSALNVYLQLRLDKNPSLKPSDPLFITQKGGPYSPNTLQEHMALMLRGWTGIEKASSHSGRRSLITDVIHSQGKSLKVAQKIAGHKNPSTTVIYDEPPEEVISEALKNLS 261          
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Tyr (recombinase domain-containing protein n=5 Tax=root TaxID=1 RepID=M5DSK1_9GAMM)

HSP 1 Score: 282 bits (722), Expect = 2.190e-92
Identity = 149/263 (56.65%), Postives = 189/263 (71.86%), Query Frame = 1
Query:    1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLT 789
            +AKSGQARVL P Q  ELFS+I+ HRHPEKN AIMQ+SF LGLRAQEI+LLQIKEVA+L P        FKL E++ LPA+YTKGANAVR    +  R+  ++ FT D F+ +V ++    +AG+ V P+ +YP   K  G SRDLPL DDEL+ +L  +L  R+  +   + SDPLFL+QKG  Y+PN+LQ+HM  ML  WAG+E ASSHSGRR+  TD+IH Q K VKVAQ++ GH   STTI+Y EPPEE +ASAL+GL+
Sbjct:    5 MAKSGQARVLSPSQQQELFSVIKTHRHPEKNLAIMQISFRLGLRAQEIALLQIKEVAQLNPTGTD----FKLLEVMSLPAAYTKGANAVRRSQSTYTRK--SLSFTVDAFDSVVKQIESLVKAGVAVNPKDFYPPEKKHRGKSRDLPLIDDELRRSLETHLRRRMSKESKLRPSDPLFLSQKGTPYSPNTLQEHMAHMLRNWAGVEKASSHSGRRSVITDIIHNQKKSVKVAQKVAGHVNPSTTIIYEEPPEELIASALAGLS 261          
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Site-specific (integrase n=2 Tax=Halieaceae TaxID=1706372 RepID=A0A2N5X020_9GAMM)

HSP 1 Score: 280 bits (717), Expect = 9.930e-92
Identity = 146/263 (55.51%), Postives = 192/263 (73.00%), Query Frame = 1
Query:    1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLT 789
            +AKSGQARV  P +   +F +I+ HRHPEKN AIMQ+S  LGLRAQEI+LLQIKEVA+L         GF L +++ LPASYTKGANA+     +P+    TV F+ + F+++V ++ + A+AG+ + PE +YP   KRSG SRDLPL D+ L+ AL AYL +RL+ DP  K +DPLF+TQKG  Y+PN+LQ+HM L+L GWAGIE ASSHSGRR+  TD+IH Q K +KVAQ++ GHK ASTT++Y EPPEE ++ AL  L+
Sbjct:    1 MAKSGQARVPTPEEWQRVFEVIQDHRHPEKNTAIMQISAKLGLRAQEIALLQIKEVARLKKSPP----GFTLFKVMTLPASYTKGANAMG--RSTPKYVRRTVSFSVEEFDQVVAQIVDLAKAGVEIDPERFYPAVKKRSGQSRDLPLVDETLRDALTAYLALRLEKDPGTKPTDPLFVTQKGGPYSPNTLQEHMALILRGWAGIEKASSHSGRRSVITDIIHRQKKSLKVAQKVAGHKSASTTVIYDEPPEEAISDALKNLS 257          
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: site-specific (integrase n=1 Tax=Marinobacter salicampi TaxID=435907 RepID=UPI00140AA449)

HSP 1 Score: 280 bits (717), Expect = 1.300e-91
Identity = 146/265 (55.09%), Postives = 192/265 (72.45%), Query Frame = 1
Query:    1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLTYK 795
            ++K+GQARVL P Q   L S+IR+HR+PEKN A++Q+SF LGLR QEI+LLQIK+VA+LGP+T SG R FKLKEIL LPA+YTKGA+A+R    + +R+   V F+   F+++V ++   A+AG  ++PE +YP+  K  G SRDLPL D  L+ A+  YL +RL   P AK +D LFLTQKG  Y+PN+LQ+H+ LM   WAGIE ASSHSGRRT  T++IH Q K VKVAQ++ GH  ASTT++Y EPPEE +  AL    Y+
Sbjct:    1 MSKTGQARVLTPEQFGHLLSVIREHRYPEKNTALVQISFKLGLRVQEIALLQIKDVAELGPDT-SGQRSFKLKEILALPAAYTKGADALRRSKSTYQRR--RVSFSVHDFHQLVQQIETMAKAGAEIKPEDFYPELKKHRGKSRDLPLNDVALRTAIENYLSIRLATRPSAKKTDRLFLTQKGGPYSPNTLQEHLALMQRHWAGIERASSHSGRRTLITNIIHEQKKSVKVAQKIAGHVSASTTLIYEEPPEESLKEALQNAGYQ 262          
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: site-specific (integrase n=1 Tax=Gilvimarinus chinensis TaxID=396005 RepID=UPI0003796ED0)

HSP 1 Score: 277 bits (708), Expect = 2.630e-90
Identity = 147/260 (56.54%), Postives = 185/260 (71.15%), Query Frame = 1
Query:    7 KSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGL 786
            K GQARV  P +   LF +I+QHRHPEKN AIMQ+SF LGLRAQEI+LLQIKEV +L   + S  R F+L +I+ LPA+YTKGA+A+   AK  ER+  +V F+ D FN +V+++   A AG  + PES+YP   K  G SRDLPL D EL+ +L  YL +RL+ DP  K  DPLF++QKG +Y+PN+LQ+HM LML  WA IE +SSHSGRR   TDVIH Q K VKVAQ++ GH   STTI+Y EPPEEE+A +L  L
Sbjct:    3 KYGQARVPTPAEKRHLFDVIKQHRHPEKNTAIMQISFKLGLRAQEIALLQIKEVCRLSKASKSTPRTFELHQIMALPAAYTKGADALGRSAKKYERK--SVSFSVDEFNRVVEQIKALAVAGAKIDPESFYPPVKKHKGKSRDLPLVDLELRNSLTEYLALRLERDPNVKPGDPLFISQKGGSYSPNTLQEHMALMLRDWAKIEKSSSHSGRRALITDVIHKQKKSVKVAQKIAGHVSPSTTIIYEEPPEEELAESLKDL 260          
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Putative (integrase n=1 Tax=Marinobacter nauticus (strain ATCC 49840 / DSM 8798 / CIP 103578 / SP17) TaxID=1163748 RepID=H8W4D7_MARN1)

HSP 1 Score: 276 bits (705), Expect = 8.560e-90
Identity = 141/264 (53.41%), Postives = 190/264 (71.97%), Query Frame = 1
Query:    1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLTY 792
            ++K+GQARVL P Q   L ++I++HRHP+KN A++Q+SF LGLR QEI+LLQIK+VA+LGPET    R F+LKEIL LPA+YTKGA+A++    + +R+   + F+   F+++V  +   A+AG  + PE +YP+  K  G SRDLPL+D  L+ AL AYL +RL  DP  K + PLFLTQKGV Y+PN+LQ+H+ LM   WAGIE ASSHSGRRT  T++IH Q K VKVAQ++ GH  ASTT++Y EPPEE +   L  + +
Sbjct:    1 MSKTGQARVLTPEQFAYLLNVIQEHRHPQKNTALVQISFKLGLRVQEIALLQIKDVAELGPETTDQ-RSFRLKEILALPAAYTKGADALKRSKSTYQRR--RISFSIHDFDQLVRRIETMAKAGAEINPEDFYPEVKKHRGKSRDLPLSDSVLRTALEAYLRLRLAKDPTLKKTSPLFLTQKGVPYSPNTLQEHLALMQRQWAGIERASSHSGRRTLMTNIIHEQKKSVKVAQKIAGHVSASTTLIYEEPPEESLKETLHSVGF 261          
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Integrase (n=1 Tax=Marinobacter sp. EVN1 TaxID=1397532 RepID=U7NH48_9GAMM)

HSP 1 Score: 275 bits (702), Expect = 2.440e-89
Identity = 139/259 (53.67%), Postives = 187/259 (72.20%), Query Frame = 1
Query:    1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASAL 777
            ++K+GQARVL P Q   L  +I +HR+PEKN A++Q+SF LGLR QEI+LLQIK+VA+ GPE  SG R F+LKEIL LPA+YTKGA+A++    + +R+   + F+   F+++V  +   A+AG  + PE +YP+  K  G SRDLP+ D  L++A+  YL +RL  DP  K SDPLF+TQKG  Y+PN+LQ+H+ LM   WAGIE ASSHSGRRT  T++IH Q K VK+AQ++ GH  ASTT++Y EPPEE +A AL
Sbjct:    1 MSKTGQARVLTPEQFAHLLHVIHEHRYPEKNTALVQISFKLGLRVQEIALLQIKDVAEFGPEN-SGQRSFRLKEILALPAAYTKGADALKRSKSTYQRR--RISFSVHDFDQLVRHIETMAKAGAEINPEDFYPEVKKHRGRSRDLPMTDGALRSAIEEYLSIRLAKDPSLKKSDPLFITQKGGPYSPNTLQEHLSLMQRRWAGIERASSHSGRRTLMTNIIHEQKKSVKIAQKIAGHVSASTTLIYEEPPEESLAGAL 256          
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Integrase (n=1 Tax=Marinobacter salinus TaxID=1874317 RepID=A0A1D9GJB0_9GAMM)

HSP 1 Score: 274 bits (700), Expect = 4.910e-89
Identity = 142/264 (53.79%), Postives = 187/264 (70.83%), Query Frame = 1
Query:    1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLTY 792
            ++K+GQARVL P Q   L   I++HR+PEKN A++Q+SF LGLR QEI+LLQIK+VA+LGPET SG R FK KEIL LPA+YTKGA+A++    S  R+   + F+   F+++V  +   A+AG  ++PE +YP+  K  G SRDLP+ D  L+ AL  YL +RL  +P  K SDPLFLTQKG  Y+PN+LQ+H+ LM   WAGIE ASSHSGRRT  T++IHGQ K VK+AQ++ GH   STT++Y EPPE+ +  AL    Y
Sbjct:    1 MSKTGQARVLTPEQFAHLLREIKEHRYPEKNTALVQISFKLGLRVQEIALLQIKDVAELGPET-SGQRSFKQKEILALPAAYTKGADALKRSRSSYHRR--RISFSVHDFDQLVRRIETMAKAGADIKPEDFYPEVRKHRGRSRDLPMNDVALRIALEEYLSIRLAKNPAVKKSDPLFLTQKGGPYSPNTLQEHLSLMQRQWAGIERASSHSGRRTLMTNIIHGQKKSVKIAQKIAGHVSPSTTLIYEEPPEDSLKEALQNAGY 261          
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: site-specific (integrase n=1 Tax=unclassified Marinobacter TaxID=83889 RepID=UPI0019262569)

HSP 1 Score: 273 bits (698), Expect = 9.870e-89
Identity = 142/266 (53.38%), Postives = 193/266 (72.56%), Query Frame = 1
Query:    1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASAL--SGLTY 792
            ++K+GQARVL P Q   L S+I++HR+PEKN A++Q+SF LGLR QEI+LLQIK+VA+LGPE+ SG R FKLKEIL LPA+YTKGANA++    + +R+   + F+   F+++V ++   A+AG  ++P+ +YP+  K  G SRDLP+ D  L+ AL  YL  RL ++P  K SDPLFLTQKG  Y+PN+LQ+H  LM   WA IE ASSHSGRRT  T+++H Q K VK+AQ++ GH   STT++Y EPPEE +A AL  +G +Y
Sbjct:    1 MSKTGQARVLTPEQFAYLLSVIQEHRYPEKNTALVQISFKLGLRVQEIALLQIKDVAELGPES-SGQRSFKLKEILALPAAYTKGANALKRSQSTYQRR--RISFSVHDFDKLVRQIETMAKAGAEIKPQDFYPEVKKHRGKSRDLPMNDGALRTALENYLSDRLASNPLLKKSDPLFLTQKGGPYSPNTLQEHFALMQRQWARIERASSHSGRRTLMTNILHDQKKSVKIAQKIAGHVSPSTTLIYEEPPEESLAEALHTAGFSY 263          
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: site-specific (integrase n=1 Tax=Marinobacter maritimus TaxID=277961 RepID=UPI0011A4F233)

HSP 1 Score: 272 bits (696), Expect = 1.980e-88
Identity = 139/264 (52.65%), Postives = 189/264 (71.59%), Query Frame = 1
Query:    1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLTY 792
            ++K+GQARVL PHQ   L ++I++HR+PEKN A++Q+SF LGLR QE++LLQIK+VA+LG  T SG R F LKEIL LPA+YTKGA+A++    + +R+   + F+   F++++ ++   A+AG  +RPE +YP+  K  G SRDLP+ D  L+ A+  YL +RL ++P  K SDPLFLTQKG  Y+PN+LQ+H  LM   WAGIE ASSHSGRRT  T++IH Q K VKVAQ++ GH   STT++Y EPPEE +  AL    Y
Sbjct:    1 MSKTGQARVLTPHQFGHLLNVIQEHRYPEKNTALVQISFKLGLRVQEVALLQIKDVAELGIRT-SGNRSFMLKEILALPAAYTKGADALKRSKSTYQRR--RISFSVHDFDQLIRQIETMAKAGAEIRPEDFYPEVNKHRGKSRDLPMNDAALRTAIENYLSIRLASNPPVKKSDPLFLTQKGGPYSPNTLQEHFALMQRDWAGIERASSHSGRRTLMTNIIHEQKKSVKVAQKIAGHVSPSTTLIYEEPPEESLKEALQDAGY 261          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Integrase9.060e-9355.89n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0... [more]
Tyr2.190e-9256.65recombinase domain-containing protein n=5 Tax=root... [more]
Site-specific9.930e-9255.51integrase n=2 Tax=Halieaceae TaxID=1706372 RepID=A... [more]
site-specific1.300e-9155.09integrase n=1 Tax=Marinobacter salicampi TaxID=435... [more]
site-specific2.630e-9056.54integrase n=1 Tax=Gilvimarinus chinensis TaxID=396... [more]
Putative8.560e-9053.41integrase n=1 Tax=Marinobacter nauticus (strain AT... [more]
Integrase2.440e-8953.67n=1 Tax=Marinobacter sp. EVN1 TaxID=1397532 RepID=... [more]
Integrase4.910e-8953.79n=1 Tax=Marinobacter salinus TaxID=1874317 RepID=A... [more]
site-specific9.870e-8953.38integrase n=1 Tax=unclassified Marinobacter TaxID=... [more]
site-specific1.980e-8852.65integrase n=1 Tax=Marinobacter maritimus TaxID=277... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1contigEcto-sp9_F_contig1:5994..6800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score286.6
Seed ortholog evalue1.2e-74
Seed eggNOG ortholog1298593.TOL_1733
EggNOG free text desc.viral genome integration into host DNA
EggNOG OGs1R6G2@1224,1RUQ6@1236,COG0582@1,COG0582@2
COG Functional cat.L
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size807
Cds size807
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928185.9878323-CDS-Ecto-sp9_F_contig1:5993..68001622928185.9878323-CDS-Ecto-sp9_F_contig1:5993..6800Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 5994..6800 +
1692277781.9648879-CDS-Ecto-sp9_F_contig1:5993..68001692277781.9648879-CDS-Ecto-sp9_F_contig1:5993..6800Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1 5994..6800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1.1.1prot_Ecto-sp9_F_contig1.1.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1 5994..6800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1.1.1

>prot_Ecto-sp9_F_contig1.1.1 ID=prot_Ecto-sp9_F_contig1.1.1|Name=mRNA_Ecto-sp9_F_contig1.1.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=269bp
VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISL
LQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQG
STVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLAD
DELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLI
GWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEP
PEEEMASALSGLTYKRNE*
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mRNA from alignment at Ecto-sp9_F_contig1:5994..6800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1.1.1 ID=mRNA_Ecto-sp9_F_contig1.1.1|Name=mRNA_Ecto-sp9_F_contig1.1.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=807bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:5994..6800+ (Ectocarpus species9 EcSCA_722f female)
GTGGCAAAAAGCGGTCAAGCCAGAGTTTTACGGCCTCATCAAATCGACGA GCTGTTCAGTATAATCCGCCAGCACCGGCATCCGGAAAAGAACGCTGCAA TAATGCAGGTGTCCTTCAGTCTTGGACTCCGCGCCCAAGAGATCTCTCTG CTGCAAATCAAGGAAGTGGCAAAGCTGGGCCCTGAGACGGCAAGCGGCCT AAGAGGTTTCAAACTGAAAGAAATCTTGAAGCTCCCAGCTTCCTACACCA AAGGCGCAAACGCCGTCAGGCCGGAGGCTAAGTCGCCAGAGCGTCAAGGC TCGACCGTAAAATTCACAAAAGACCGCTTTAACGAAATAGTAGATGAAGT TGCTGAGCGTGCCCGGGCCGGACTACCAGTTAGGCCCGAATCATACTACC CAAAGCCAGCGAAACGCTCAGGCGTATCGCGAGACCTGCCCCTTGCCGAT GACGAGCTTCAAGCCGCGCTCATTGCGTACTTAGAAGTTCGGTTGAAAGC TGATCCGTACGCGAAGATGTCTGACCCTCTGTTTCTGACGCAAAAAGGTG TTGCATACACACCGAATTCTCTTCAAAAGCACATGCGCCTGATGTTGATC GGCTGGGCTGGCATCGAAGGCGCCAGCTCTCATAGCGGTCGACGCACATT CGCAACTGATGTTATCCATGGCCAAGGTAAGCCGGTCAAAGTTGCGCAAC GTCTGATGGGTCACAAAGAGGCATCGACGACTATTTTATACACTGAACCG CCAGAGGAAGAGATGGCTTCTGCCCTATCCGGGCTCACATACAAGCGCAA TGAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:5994..6800+

>mRNA_Ecto-sp9_F_contig1.1.1 ID=mRNA_Ecto-sp9_F_contig1.1.1|Name=mRNA_Ecto-sp9_F_contig1.1.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1614bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:5994..6800+ (Ectocarpus species9 EcSCA_722f female)
GTGGCAAAAAGCGGTCAAGCCAGAGTTTTACGGCCTCATCAAATCGACGA
GCTGTTCAGTATAATCCGCCAGCACCGGCATCCGGAAAAGAACGCTGCAA
TAATGCAGGTGTCCTTCAGTCTTGGACTCCGCGCCCAAGAGATCTCTCTG
CTGCAAATCAAGGAAGTGGCAAAGCTGGGCCCTGAGACGGCAAGCGGCCT
AAGAGGTTTCAAACTGAAAGAAATCTTGAAGCTCCCAGCTTCCTACACCA
AAGGCGCAAACGCCGTCAGGCCGGAGGCTAAGTCGCCAGAGCGTCAAGGC
TCGACCGTAAAATTCACAAAAGACCGCTTTAACGAAATAGTAGATGAAGT
TGCTGAGCGTGCCCGGGCCGGACTACCAGTTAGGCCCGAATCATACTACC
CAAAGCCAGCGAAACGCTCAGGCGTATCGCGAGACCTGCCCCTTGCCGAT
GACGAGCTTCAAGCCGCGCTCATTGCGTACTTAGAAGTTCGGTTGAAAGC
TGATCCGTACGCGAAGATGTCTGACCCTCTGTTTCTGACGCAAAAAGGTG
TTGCATACACACCGAATTCTCTTCAAAAGCACATGCGCCTGATGTTGATC
GGCTGGGCTGGCATCGAAGGCGCCAGCTCTCATAGCGGTCGACGCACATT
CGCAACTGATGTTATCCATGGCCAAGGTAAGCCGGTCAAAGTTGCGCAAC
GTCTGATGGGTCACAAAGAGGCATCGACGACTATTTTATACACTGAACCG
CCAGAGGAAGAGATGGCTTCTGCCCTATCCGGGCTCACATACAAGCGCAA
TGAGTAAGTGGCAAAAAGCGGTCAAGCCAGAGTTTTACGGCCTCATCAAA
TCGACGAGCTGTTCAGTATAATCCGCCAGCACCGGCATCCGGAAAAGAAC
GCTGCAATAATGCAGGTGTCCTTCAGTCTTGGACTCCGCGCCCAAGAGAT
CTCTCTGCTGCAAATCAAGGAAGTGGCAAAGCTGGGCCCTGAGACGGCAA
GCGGCCTAAGAGGTTTCAAACTGAAAGAAATCTTGAAGCTCCCAGCTTCC
TACACCAAAGGCGCAAACGCCGTCAGGCCGGAGGCTAAGTCGCCAGAGCG
TCAAGGCTCGACCGTAAAATTCACAAAAGACCGCTTTAACGAAATAGTAG
ATGAAGTTGCTGAGCGTGCCCGGGCCGGACTACCAGTTAGGCCCGAATCA
TACTACCCAAAGCCAGCGAAACGCTCAGGCGTATCGCGAGACCTGCCCCT
TGCCGATGACGAGCTTCAAGCCGCGCTCATTGCGTACTTAGAAGTTCGGT
TGAAAGCTGATCCGTACGCGAAGATGTCTGACCCTCTGTTTCTGACGCAA
AAAGGTGTTGCATACACACCGAATTCTCTTCAAAAGCACATGCGCCTGAT
GTTGATCGGCTGGGCTGGCATCGAAGGCGCCAGCTCTCATAGCGGTCGAC
GCACATTCGCAACTGATGTTATCCATGGCCAAGGTAAGCCGGTCAAAGTT
GCGCAACGTCTGATGGGTCACAAAGAGGCATCGACGACTATTTTATACAC
TGAACCGCCAGAGGAAGAGATGGCTTCTGCCCTATCCGGGCTCACATACA
AGCGCAATGAGTAA
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