mRNA_Ecto-sp9_F_contig1.1.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Integrase (n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GFX5_9GAMM) HSP 1 Score: 283 bits (725), Expect = 9.060e-93 Identity = 147/263 (55.89%), Postives = 189/263 (71.86%), Query Frame = 1
Query: 1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLT 789
+AK GQARVL P Q+ +LF IR HRHPEKN AIMQ+SF LGLRAQEI+LLQIKEVAKL + F+L +I+ LPA+ TKGANA +R+ +V+F+ D+F + V ++ +AG + PE +YP KRSG SRDLP+ D +L++AL YL++RL +P K SDPLF+TQKG Y+PN+LQ+HM LML GW GIE ASSHSGRR+ TDVIH QGK +KVAQ++ GHK STT++Y EPPEE ++ AL L+
Sbjct: 1 MAKVGQARVLSPDQMQQLFDAIRSHRHPEKNIAIMQISFKLGLRAQEIALLQIKEVAKLSGPPGQANQTFQLYDIMALPAAITKGANATGRSRSIYKRR--SVRFSVDQFAQTVRQIEALVKAGAEIHPEDFYPPVEKRSGHSRDLPMVDPDLRSALNVYLQLRLDKNPSLKPSDPLFITQKGGPYSPNTLQEHMALMLRGWTGIEKASSHSGRRSLITDVIHSQGKSLKVAQKIAGHKNPSTTVIYDEPPEEVISEALKNLS 261
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Tyr (recombinase domain-containing protein n=5 Tax=root TaxID=1 RepID=M5DSK1_9GAMM) HSP 1 Score: 282 bits (722), Expect = 2.190e-92 Identity = 149/263 (56.65%), Postives = 189/263 (71.86%), Query Frame = 1
Query: 1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLT 789
+AKSGQARVL P Q ELFS+I+ HRHPEKN AIMQ+SF LGLRAQEI+LLQIKEVA+L P FKL E++ LPA+YTKGANAVR + R+ ++ FT D F+ +V ++ +AG+ V P+ +YP K G SRDLPL DDEL+ +L +L R+ + + SDPLFL+QKG Y+PN+LQ+HM ML WAG+E ASSHSGRR+ TD+IH Q K VKVAQ++ GH STTI+Y EPPEE +ASAL+GL+
Sbjct: 5 MAKSGQARVLSPSQQQELFSVIKTHRHPEKNLAIMQISFRLGLRAQEIALLQIKEVAQLNPTGTD----FKLLEVMSLPAAYTKGANAVRRSQSTYTRK--SLSFTVDAFDSVVKQIESLVKAGVAVNPKDFYPPEKKHRGKSRDLPLIDDELRRSLETHLRRRMSKESKLRPSDPLFLSQKGTPYSPNTLQEHMAHMLRNWAGVEKASSHSGRRSVITDIIHNQKKSVKVAQKVAGHVNPSTTIIYEEPPEELIASALAGLS 261
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Site-specific (integrase n=2 Tax=Halieaceae TaxID=1706372 RepID=A0A2N5X020_9GAMM) HSP 1 Score: 280 bits (717), Expect = 9.930e-92 Identity = 146/263 (55.51%), Postives = 192/263 (73.00%), Query Frame = 1
Query: 1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLT 789
+AKSGQARV P + +F +I+ HRHPEKN AIMQ+S LGLRAQEI+LLQIKEVA+L GF L +++ LPASYTKGANA+ +P+ TV F+ + F+++V ++ + A+AG+ + PE +YP KRSG SRDLPL D+ L+ AL AYL +RL+ DP K +DPLF+TQKG Y+PN+LQ+HM L+L GWAGIE ASSHSGRR+ TD+IH Q K +KVAQ++ GHK ASTT++Y EPPEE ++ AL L+
Sbjct: 1 MAKSGQARVPTPEEWQRVFEVIQDHRHPEKNTAIMQISAKLGLRAQEIALLQIKEVARLKKSPP----GFTLFKVMTLPASYTKGANAMG--RSTPKYVRRTVSFSVEEFDQVVAQIVDLAKAGVEIDPERFYPAVKKRSGQSRDLPLVDETLRDALTAYLALRLEKDPGTKPTDPLFVTQKGGPYSPNTLQEHMALILRGWAGIEKASSHSGRRSVITDIIHRQKKSLKVAQKVAGHKSASTTVIYDEPPEEAISDALKNLS 257
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: site-specific (integrase n=1 Tax=Marinobacter salicampi TaxID=435907 RepID=UPI00140AA449) HSP 1 Score: 280 bits (717), Expect = 1.300e-91 Identity = 146/265 (55.09%), Postives = 192/265 (72.45%), Query Frame = 1
Query: 1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLTYK 795
++K+GQARVL P Q L S+IR+HR+PEKN A++Q+SF LGLR QEI+LLQIK+VA+LGP+T SG R FKLKEIL LPA+YTKGA+A+R + +R+ V F+ F+++V ++ A+AG ++PE +YP+ K G SRDLPL D L+ A+ YL +RL P AK +D LFLTQKG Y+PN+LQ+H+ LM WAGIE ASSHSGRRT T++IH Q K VKVAQ++ GH ASTT++Y EPPEE + AL Y+
Sbjct: 1 MSKTGQARVLTPEQFGHLLSVIREHRYPEKNTALVQISFKLGLRVQEIALLQIKDVAELGPDT-SGQRSFKLKEILALPAAYTKGADALRRSKSTYQRR--RVSFSVHDFHQLVQQIETMAKAGAEIKPEDFYPELKKHRGKSRDLPLNDVALRTAIENYLSIRLATRPSAKKTDRLFLTQKGGPYSPNTLQEHLALMQRHWAGIERASSHSGRRTLITNIIHEQKKSVKVAQKIAGHVSASTTLIYEEPPEESLKEALQNAGYQ 262
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: site-specific (integrase n=1 Tax=Gilvimarinus chinensis TaxID=396005 RepID=UPI0003796ED0) HSP 1 Score: 277 bits (708), Expect = 2.630e-90 Identity = 147/260 (56.54%), Postives = 185/260 (71.15%), Query Frame = 1
Query: 7 KSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGL 786
K GQARV P + LF +I+QHRHPEKN AIMQ+SF LGLRAQEI+LLQIKEV +L + S R F+L +I+ LPA+YTKGA+A+ AK ER+ +V F+ D FN +V+++ A AG + PES+YP K G SRDLPL D EL+ +L YL +RL+ DP K DPLF++QKG +Y+PN+LQ+HM LML WA IE +SSHSGRR TDVIH Q K VKVAQ++ GH STTI+Y EPPEEE+A +L L
Sbjct: 3 KYGQARVPTPAEKRHLFDVIKQHRHPEKNTAIMQISFKLGLRAQEIALLQIKEVCRLSKASKSTPRTFELHQIMALPAAYTKGADALGRSAKKYERK--SVSFSVDEFNRVVEQIKALAVAGAKIDPESFYPPVKKHKGKSRDLPLVDLELRNSLTEYLALRLERDPNVKPGDPLFISQKGGSYSPNTLQEHMALMLRDWAKIEKSSSHSGRRALITDVIHKQKKSVKVAQKIAGHVSPSTTIIYEEPPEEELAESLKDL 260
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Putative (integrase n=1 Tax=Marinobacter nauticus (strain ATCC 49840 / DSM 8798 / CIP 103578 / SP17) TaxID=1163748 RepID=H8W4D7_MARN1) HSP 1 Score: 276 bits (705), Expect = 8.560e-90 Identity = 141/264 (53.41%), Postives = 190/264 (71.97%), Query Frame = 1
Query: 1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLTY 792
++K+GQARVL P Q L ++I++HRHP+KN A++Q+SF LGLR QEI+LLQIK+VA+LGPET R F+LKEIL LPA+YTKGA+A++ + +R+ + F+ F+++V + A+AG + PE +YP+ K G SRDLPL+D L+ AL AYL +RL DP K + PLFLTQKGV Y+PN+LQ+H+ LM WAGIE ASSHSGRRT T++IH Q K VKVAQ++ GH ASTT++Y EPPEE + L + +
Sbjct: 1 MSKTGQARVLTPEQFAYLLNVIQEHRHPQKNTALVQISFKLGLRVQEIALLQIKDVAELGPETTDQ-RSFRLKEILALPAAYTKGADALKRSKSTYQRR--RISFSIHDFDQLVRRIETMAKAGAEINPEDFYPEVKKHRGKSRDLPLSDSVLRTALEAYLRLRLAKDPTLKKTSPLFLTQKGVPYSPNTLQEHLALMQRQWAGIERASSHSGRRTLMTNIIHEQKKSVKVAQKIAGHVSASTTLIYEEPPEESLKETLHSVGF 261
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Integrase (n=1 Tax=Marinobacter sp. EVN1 TaxID=1397532 RepID=U7NH48_9GAMM) HSP 1 Score: 275 bits (702), Expect = 2.440e-89 Identity = 139/259 (53.67%), Postives = 187/259 (72.20%), Query Frame = 1
Query: 1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASAL 777
++K+GQARVL P Q L +I +HR+PEKN A++Q+SF LGLR QEI+LLQIK+VA+ GPE SG R F+LKEIL LPA+YTKGA+A++ + +R+ + F+ F+++V + A+AG + PE +YP+ K G SRDLP+ D L++A+ YL +RL DP K SDPLF+TQKG Y+PN+LQ+H+ LM WAGIE ASSHSGRRT T++IH Q K VK+AQ++ GH ASTT++Y EPPEE +A AL
Sbjct: 1 MSKTGQARVLTPEQFAHLLHVIHEHRYPEKNTALVQISFKLGLRVQEIALLQIKDVAEFGPEN-SGQRSFRLKEILALPAAYTKGADALKRSKSTYQRR--RISFSVHDFDQLVRHIETMAKAGAEINPEDFYPEVKKHRGRSRDLPMTDGALRSAIEEYLSIRLAKDPSLKKSDPLFITQKGGPYSPNTLQEHLSLMQRRWAGIERASSHSGRRTLMTNIIHEQKKSVKIAQKIAGHVSASTTLIYEEPPEESLAGAL 256
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: Integrase (n=1 Tax=Marinobacter salinus TaxID=1874317 RepID=A0A1D9GJB0_9GAMM) HSP 1 Score: 274 bits (700), Expect = 4.910e-89 Identity = 142/264 (53.79%), Postives = 187/264 (70.83%), Query Frame = 1
Query: 1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLTY 792
++K+GQARVL P Q L I++HR+PEKN A++Q+SF LGLR QEI+LLQIK+VA+LGPET SG R FK KEIL LPA+YTKGA+A++ S R+ + F+ F+++V + A+AG ++PE +YP+ K G SRDLP+ D L+ AL YL +RL +P K SDPLFLTQKG Y+PN+LQ+H+ LM WAGIE ASSHSGRRT T++IHGQ K VK+AQ++ GH STT++Y EPPE+ + AL Y
Sbjct: 1 MSKTGQARVLTPEQFAHLLREIKEHRYPEKNTALVQISFKLGLRVQEIALLQIKDVAELGPET-SGQRSFKQKEILALPAAYTKGADALKRSRSSYHRR--RISFSVHDFDQLVRRIETMAKAGADIKPEDFYPEVRKHRGRSRDLPMNDVALRIALEEYLSIRLAKNPAVKKSDPLFLTQKGGPYSPNTLQEHLSLMQRQWAGIERASSHSGRRTLMTNIIHGQKKSVKIAQKIAGHVSPSTTLIYEEPPEDSLKEALQNAGY 261
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: site-specific (integrase n=1 Tax=unclassified Marinobacter TaxID=83889 RepID=UPI0019262569) HSP 1 Score: 273 bits (698), Expect = 9.870e-89 Identity = 142/266 (53.38%), Postives = 193/266 (72.56%), Query Frame = 1
Query: 1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASAL--SGLTY 792
++K+GQARVL P Q L S+I++HR+PEKN A++Q+SF LGLR QEI+LLQIK+VA+LGPE+ SG R FKLKEIL LPA+YTKGANA++ + +R+ + F+ F+++V ++ A+AG ++P+ +YP+ K G SRDLP+ D L+ AL YL RL ++P K SDPLFLTQKG Y+PN+LQ+H LM WA IE ASSHSGRRT T+++H Q K VK+AQ++ GH STT++Y EPPEE +A AL +G +Y
Sbjct: 1 MSKTGQARVLTPEQFAYLLSVIQEHRYPEKNTALVQISFKLGLRVQEIALLQIKDVAELGPES-SGQRSFKLKEILALPAAYTKGANALKRSQSTYQRR--RISFSVHDFDKLVRQIETMAKAGAEIKPQDFYPEVKKHRGKSRDLPMNDGALRTALENYLSDRLASNPLLKKSDPLFLTQKGGPYSPNTLQEHFALMQRQWARIERASSHSGRRTLMTNILHDQKKSVKIAQKIAGHVSPSTTLIYEEPPEESLAEALHTAGFSY 263
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Match: site-specific (integrase n=1 Tax=Marinobacter maritimus TaxID=277961 RepID=UPI0011A4F233) HSP 1 Score: 272 bits (696), Expect = 1.980e-88 Identity = 139/264 (52.65%), Postives = 189/264 (71.59%), Query Frame = 1
Query: 1 VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLLQIKEVAKLGPETASGLRGFKLKEILKLPASYTKGANAVRPEAKSPERQGSTVKFTKDRFNEIVDEVAERARAGLPVRPESYYPKPAKRSGVSRDLPLADDELQAALIAYLEVRLKADPYAKMSDPLFLTQKGVAYTPNSLQKHMRLMLIGWAGIEGASSHSGRRTFATDVIHGQGKPVKVAQRLMGHKEASTTILYTEPPEEEMASALSGLTY 792
++K+GQARVL PHQ L ++I++HR+PEKN A++Q+SF LGLR QE++LLQIK+VA+LG T SG R F LKEIL LPA+YTKGA+A++ + +R+ + F+ F++++ ++ A+AG +RPE +YP+ K G SRDLP+ D L+ A+ YL +RL ++P K SDPLFLTQKG Y+PN+LQ+H LM WAGIE ASSHSGRRT T++IH Q K VKVAQ++ GH STT++Y EPPEE + AL Y
Sbjct: 1 MSKTGQARVLTPHQFGHLLNVIQEHRYPEKNTALVQISFKLGLRVQEVALLQIKDVAELGIRT-SGNRSFMLKEILALPAAYTKGADALKRSKSTYQRR--RISFSVHDFDQLIRQIETMAKAGAEIRPEDFYPEVNKHRGKSRDLPMNDAALRTAIENYLSIRLASNPPVKKSDPLFLTQKGGPYSPNTLQEHFALMQRDWAGIERASSHSGRRTLMTNIIHEQKKSVKVAQKIAGHVSPSTTLIYEEPPEESLKEALQDAGY 261 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1.1.1 >prot_Ecto-sp9_F_contig1.1.1 ID=prot_Ecto-sp9_F_contig1.1.1|Name=mRNA_Ecto-sp9_F_contig1.1.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=269bp VAKSGQARVLRPHQIDELFSIIRQHRHPEKNAAIMQVSFSLGLRAQEISLback to top mRNA from alignment at Ecto-sp9_F_contig1:5994..6800+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1.1.1 ID=mRNA_Ecto-sp9_F_contig1.1.1|Name=mRNA_Ecto-sp9_F_contig1.1.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=807bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:5994..6800+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1:5994..6800+ >mRNA_Ecto-sp9_F_contig1.1.1 ID=mRNA_Ecto-sp9_F_contig1.1.1|Name=mRNA_Ecto-sp9_F_contig1.1.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1614bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1:5994..6800+ (Ectocarpus species9 EcSCA_722f female)back to top |