mRNA_Ecto-sp8_S_contig99309.31791.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig99309.31791.1
Unique NamemRNA_Ecto-sp8_S_contig99309.31791.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Match: A0A6H5KBE8_9PHAE (Pyruvate dehydrogenase E1 component subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBE8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.480e-24
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 TFRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQ 144
            T+RYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQ
Sbjct:  299 TYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQ 346
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BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Match: A0A835Z5P4_9STRA (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.730e-20
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 TFRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQ 144
            T+RYHGHSMSDPGTTYRNRDEIASMRTARDPIE+VKNLLV + LA+ Q
Sbjct:  290 TYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEYVKNLLVQHNLADPQ 337
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Match: A0A2P6U3S6_CHLSO (Pyruvate dehydrogenase E1 component subunit alpha n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U3S6_CHLSO)

HSP 1 Score: 82.0 bits (201), Expect = 3.830e-17
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 TFRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEA 141
            T+RYHGHSMSDPG+TYR RDEI+S+R  RDPIE V+ LLVDNGLAEA
Sbjct:  291 TYRYHGHSMSDPGSTYRTRDEISSIRQQRDPIEHVRKLLVDNGLAEA 337
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BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Match: A0A6U0J2F0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0J2F0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.610e-17
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 TFRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQ 144
            T+RYHGHSMSDPGTTYRNR+EIA  R+ RDP+EFVK  ++D G A A+
Sbjct:   23 TYRYHGHSMSDPGTTYRNREEIAFTRSTRDPLEFVKKTMIDAGFATAE 70
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Match: A0A8J2SEA3_9STRA (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEA3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.360e-16
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 TFRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDN 126
            T+RYHGHSMSDPGTTYRNRDEIA+MR  RDPIEFVKNLL+++
Sbjct:  282 TYRYHGHSMSDPGTTYRNRDEIAAMRQTRDPIEFVKNLLLEH 323
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Match: K0S2Z1_THAOC (E1_dh domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2Z1_THAOC)

HSP 1 Score: 79.3 bits (194), Expect = 3.850e-16
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 TFRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQ 144
            T+RYHGHSMSDPGTTYRNR+EIA  R+ RDP+EFVK  L+D G A+A+
Sbjct:  302 TYRYHGHSMSDPGTTYRNREEIALTRSTRDPLEFVKKTLIDAGFADAE 349
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Match: A0A7S3HQ70_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ70_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.850e-16
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 TFRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEA 141
            T+RYHGHSMSDPGTTYR R+E+  +RTARDPI++VK LL DN    A
Sbjct:   76 TYRYHGHSMSDPGTTYRTREEVGGVRTARDPIDYVKKLLTDNNFCTA 122
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Match: A0A059LS40_9CHLO (Pyruvate dehydrogenase E1 component subunit alpha (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LS40_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 5.670e-16
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 TFRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQ 144
            T+RYHGHSMSDPG+TYR RDE+A +R  RDPIE V+ LL ++GLAEAQ
Sbjct:  249 TYRYHGHSMSDPGSTYRTRDEVAGIRKTRDPIEHVRRLLTESGLAEAQ 296
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Match: A0A6V2BH17_9STRA (Pyruvate dehydrogenase E1 component subunit alpha n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BH17_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.200e-16
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 TFRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEA 141
            T+RYHGHSMSDPGTTYRNR+EIA  R+ RDP+EFVK  L+D G A+A
Sbjct:  298 TYRYHGHSMSDPGTTYRNREEIAFTRSTRDPLEFVKKTLIDAGFADA 344
[Close]
BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Match: B8BVN4_THAPS (Pyruvate dehydrogenase n=3 Tax=Thalassiosirales TaxID=33847 RepID=B8BVN4_THAPS)

HSP 1 Score: 78.2 bits (191), Expect = 8.730e-16
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 TFRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQ 144
            T+RYHGHSMSDPGTTYRNR+EIA  R+ RDP+EFVK  LVD G  +A+
Sbjct:  265 TYRYHGHSMSDPGTTYRNREEIALTRSTRDPLEFVKRTLVDAGFTDAE 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig99309.31791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBE8_9PHAE5.480e-2497.92Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A835Z5P4_9STRA4.730e-2085.42Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A2P6U3S6_CHLSO3.830e-1778.72Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A6U0J2F0_9STRA5.610e-1768.75Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A8J2SEA3_9STRA1.360e-1683.33Pyruvate dehydrogenase E1 component subunit alpha ... [more]
K0S2Z1_THAOC3.850e-1670.83E1_dh domain-containing protein n=1 Tax=Thalassios... [more]
A0A7S3HQ70_9STRA4.850e-1668.09Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A059LS40_9CHLO5.670e-1670.83Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A6V2BH17_9STRA7.200e-1672.34Pyruvate dehydrogenase E1 component subunit alpha ... [more]
B8BVN4_THAPS8.730e-1670.83Pyruvate dehydrogenase n=3 Tax=Thalassiosirales Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig99309contigEcto-sp8_S_contig99309:2..145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score83.2
Seed ortholog evalue3.1e-14
Seed eggNOG ortholog2880.D7FIP4
Preferred namePDHA1
Model size144
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161,ko:K05694
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04520,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04520,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004738,GO:0004739,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006091,GO:0006099,GO:0006101,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007124,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009060,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009295,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016049,GO:0016491,GO:0016620,GO:0016624,GO:0016903,GO:0016999,GO:0017144,GO:0018130,GO:0019362,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030447,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034603,GO:0034604,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0040007,GO:0042221,GO:0042645,GO:0043167,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045254,GO:0045333,GO:0046390,GO:0046483,GO:0046496,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0070783,GO:0071616,GO:0071704,GO:0072350,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0098798,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
Exons1
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) activity
EggNOG OGsCOG0462@1,KOG0225@2759
EC1.2.4.1,3.1.3.48
Cds size120
COG Functional cat.C
BiGG ReactioniMM904.YER178W,iND750.YER178W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01009,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145362.792973-CDS-Ecto-sp8_S_contig99309:1..1211681145362.792973-CDS-Ecto-sp8_S_contig99309:1..121Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig99309 2..121 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145362.808709-UTR-Ecto-sp8_S_contig99309:121..1451681145362.808709-UTR-Ecto-sp8_S_contig99309:121..145Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig99309 122..145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig99309.31791.1prot_Ecto-sp8_S_contig99309.31791.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig99309 2..121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig99309.31791.1

>prot_Ecto-sp8_S_contig99309.31791.1 ID=prot_Ecto-sp8_S_contig99309.31791.1|Name=mRNA_Ecto-sp8_S_contig99309.31791.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=40bp
MSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQ
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mRNA from alignment at Ecto-sp8_S_contig99309:2..145-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig99309.31791.1 ID=mRNA_Ecto-sp8_S_contig99309.31791.1|Name=mRNA_Ecto-sp8_S_contig99309.31791.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99309:2..145- (Ectocarpus species8 EcLAC_412)
ACTTTCAGGTACCACGGACACTCCATGTCCGACCCCGGGACGACCTACCG
CAACCGCGACGAGATCGCGTCCATGCGCACGGCCCGCGACCCCATCGAGT
TCGTCAAGAACCTGCTCGTGGACAACGGCCTCGCGGAGGCGCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig99309:2..145-

>mRNA_Ecto-sp8_S_contig99309.31791.1 ID=mRNA_Ecto-sp8_S_contig99309.31791.1|Name=mRNA_Ecto-sp8_S_contig99309.31791.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp8_S_contig99309:2..145- (Ectocarpus species8 EcLAC_412)
ATGTCCGACCCCGGGACGACCTACCGCAACCGCGACGAGATCGCGTCCAT
GCGCACGGCCCGCGACCCCATCGAGTTCGTCAAGAACCTGCTCGTGGACA
ACGGCCTCGCGGAGGCGCAG
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