mRNA_Ecto-sp8_S_contig9871.31701.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9871.31701.1
Unique NamemRNA_Ecto-sp8_S_contig9871.31701.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9871.31701.1 vs. uniprot
Match: D7FWZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWZ2_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.200e-24
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 2 
Query:    2 NMNINVIGGGHGLGSGLSAGDKSAAGDSTISXXXXXXXXXXXXXXXXXXXXSNGGLPSGRSRSPGFDVDKPTTSXXXXXXXXXXXXXXXXFLAGATVVT 298
            NMNINVIGGGHGLGSGLSAGDKSAAGDST+SXXXXXXXXXXXXXXX     SNGGLPSGRSRSPGFDVDKPTT XXXXXXXXXXXXXXXX  AGATVVT
Sbjct:   19 NMNINVIGGGHGLGSGLSAGDKSAAGDSTVSXXXXXXXXXXXXXXXMATSSSNGGLPSGRSRSPGFDVDKPTTXXXXXXXXXXXXXXXXXXXAGATVVT 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9871.31701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWZ2_ECTSI1.200e-2490.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9871contigEcto-sp8_S_contig9871:3129..4215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_001120.1
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145355.409224-UTR-Ecto-sp8_S_contig9871:3128..31321681145355.409224-UTR-Ecto-sp8_S_contig9871:3128..3132Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9871 3129..3132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145355.4205787-CDS-Ecto-sp8_S_contig9871:3132..32341681145355.4205787-CDS-Ecto-sp8_S_contig9871:3132..3234Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9871 3133..3234 +
1681145355.4357271-CDS-Ecto-sp8_S_contig9871:4023..42151681145355.4357271-CDS-Ecto-sp8_S_contig9871:4023..4215Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9871 4024..4215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9871.31701.1prot_Ecto-sp8_S_contig9871.31701.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9871 3133..4215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9871.31701.1

>prot_Ecto-sp8_S_contig9871.31701.1 ID=prot_Ecto-sp8_S_contig9871.31701.1|Name=mRNA_Ecto-sp8_S_contig9871.31701.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=98bp
MNINVIGGGHGLGSGLSAGDKSAAGDSTISSSPPVAAAAFGSSAAMATSS
SNGGLPSGRSRSPGFDVDKPTTSSSSPGETTASSAAAAAFLAGATVVT
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mRNA from alignment at Ecto-sp8_S_contig9871:3129..4215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9871.31701.1 ID=mRNA_Ecto-sp8_S_contig9871.31701.1|Name=mRNA_Ecto-sp8_S_contig9871.31701.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1087bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9871:3129..4215+ (Ectocarpus species8 EcLAC_412)
CAATATGAACATCAACGTGATCGGAGGCGGTCACGGCCTGGGCAGCGGCC
TGAGCGCTGGCGACAAGAGCGCCGCGGGTGACTCGACGATTTCTTCCTCT
CCACCGGTGAGTGCGGACGCAACGACACACGGAGGCGTGAATCGCGAGCC
GAGCCCTTCTGCTTCGTCGCCTGCAGCAGCAGTTCCCGTGTCGCGTTTTC
TCGGCTCGACTCTGCTGCTGCTGCTGCCGTGTGTGGTTGGCGCATCAAAT
GGCTCATCTCTTCTCTCTCTCTCTTTTGTCATCCAGCACCTTTCGTCTCA
ATACCATTCGATTAATTTATCGTCGAAAATACTCACACATACATGTAAGG
TGCGATGCGATACAGCTTTGAGAGGGAGTCGCTCTCGCGGCCAACCCCAC
AGGTCCTTGGCTGGCTAGCCTGGGTCCGTGTTGCTACACGCCCGTACAGC
GTGGGCGCACAGACCCGTGCGAGCTGCGCACACACGCACACTTTTTTGCT
GGCCACACACAAATCACGACAAAATATCGCCTATATTCGTTGTTGTTCAT
CATGTTTTTCCCGACCAAGCCTGCGGCTGAACGCAAGCAGTATGCGGTCT
TGTCTCCCCTCCCCCCGTCCACCCCAGGCACTAGCAGAGACCCCGTGCGC
AAATGAACCCCGCTCAGTTCGCCGGAAACACGCTAGACGGCGGTTCCTTC
ATGCATATCCATGTTTATTTTTGCGGCCTGATTTCGCCGCTCCTTGATGG
GCCGAGATTTCTTGTTCTCCTCCCAGCAGGAAGCAGCAGAGAGTCAATGC
ACGGCAGCAGCCGTACGTGTGTAAACACCGCGAATCGAACACGTAAGACA
CACATCTGAGTATTGCCGCCCGCGATGTAAACACGAACAACACAGGTGGC
TGCCGCGGCGTTCGGCAGCAGCGCGGCCATGGCAACGTCGTCCTCCAATG
GCGGCCTTCCCAGCGGCCGCTCGCGATCCCCCGGCTTCGACGTCGACAAG
CCTACTACCTCCTCTTCTTCCCCCGGAGAAACCACTGCTAGCAGCGCCGC
AGCAGCAGCGTTTCTCGCTGGCGCAACCGTCGTGACG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9871:3129..4215+

>mRNA_Ecto-sp8_S_contig9871.31701.1 ID=mRNA_Ecto-sp8_S_contig9871.31701.1|Name=mRNA_Ecto-sp8_S_contig9871.31701.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9871:3129..4215+ (Ectocarpus species8 EcLAC_412)
ATGAACATCAACGTGATCGGAGGCGGTCACGGCCTGGGCAGCGGCCTGAG
CGCTGGCGACAAGAGCGCCGCGGGTGACTCGACGATTTCTTCCTCTCCAC
CGGTGGCTGCCGCGGCGTTCGGCAGCAGCGCGGCCATGGCAACGTCGTCC
TCCAATGGCGGCCTTCCCAGCGGCCGCTCGCGATCCCCCGGCTTCGACGT
CGACAAGCCTACTACCTCCTCTTCTTCCCCCGGAGAAACCACTGCTAGCA
GCGCCGCAGCAGCAGCGTTTCTCGCTGGCGCAACCGTCGTGACG
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