prot_Ecto-sp8_S_contig9850.31668.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig9850.31668.1
Unique Nameprot_Ecto-sp8_S_contig9850.31668.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length130
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig9850.31668.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 6.820e-16
Identity = 73/130 (56.15%), Postives = 73/130 (56.15%), Query Frame = 0 
Query:    1 MDDVNASFTNNSAFANGGAIAAADGSSLTISGPISXXXXXXXXXXXXXXXFESVIATGHGTTFXXXXXXXXXXXGIYSSVSTASINXXXXXXXXXXXXXXXXXXXXGSVWNVESPDDSGPANTTTCVFER 130
            MDDVNASFTNNSAFANGGAIAAADGSSLTI GPISXXXXXXXXXXXXXXX                                                        GSVWNVESPDDSGPANTTTCVFER
Sbjct:  341 MDDVNASFTNNSAFANGGAIAAADGSSLTIIGPISXXXXXXXXXXXXXXXXX------------------------------------------------------GSVWNVESPDDSGPANTTTCVFER 416
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9850.31668.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPF6_ECTSI6.820e-1656.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 6..25
e-value: 8.0E-5
score: 20.3
coord: 31..49
e-value: 2.1E-5
score: 22.2
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 33..48
e-value: 0.028
score: 14.9
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 6..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9850contigEcto-sp8_S_contig9850:1380..3584 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9850.31668.1mRNA_Ecto-sp8_S_contig9850.31668.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig9850 1380..3597 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig9850.31668.1 ID=prot_Ecto-sp8_S_contig9850.31668.1|Name=mRNA_Ecto-sp8_S_contig9850.31668.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=130bp
MDDVNASFTNNSAFANGGAIAAADGSSLTISGPISFVNNTAEGNGGAVAM
FESVIATGHGTTFTGNEANTGAGGGIYSSVSTASINGSVFTANQAVWGGG
MALFSSGSVWNVESPDDSGPANTTTCVFER
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence