mRNA_Ecto-sp8_S_contig9850.31668.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig9850.31668.1
Unique NamemRNA_Ecto-sp8_S_contig9850.31668.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig9850.31668.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 5.450e-18
Identity = 77/134 (57.46%), Postives = 77/134 (57.46%), Query Frame = 2 
Query:    2 SDVVMDDVNASFTNNSAFANGGAIAAADGSSLTISGPISXXXXXXXXXXXXXXXFESVIATGHGTTFXXXXXXXXXXXGIYSSVSTASINXXXXXXXXXXXXXXXXXXXXGSVWNVESPDDSGPANTTTCVFER 403
            SDVVMDDVNASFTNNSAFANGGAIAAADGSSLTI GPISXXXXXXXXXXXXXXX                                                        GSVWNVESPDDSGPANTTTCVFER
Sbjct:  337 SDVVMDDVNASFTNNSAFANGGAIAAADGSSLTIIGPISXXXXXXXXXXXXXXXXX------------------------------------------------------GSVWNVESPDDSGPANTTTCVFER 416
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig9850.31668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPF6_ECTSI5.450e-1857.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig9850contigEcto-sp8_S_contig9850:1380..3597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons4
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145352.9107282-CDS-Ecto-sp8_S_contig9850:1379..14711681145352.9107282-CDS-Ecto-sp8_S_contig9850:1379..1471Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9850 1380..1471 -
1681145352.9220865-CDS-Ecto-sp8_S_contig9850:1942..21041681145352.9220865-CDS-Ecto-sp8_S_contig9850:1942..2104Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9850 1943..2104 -
1681145352.9331434-CDS-Ecto-sp8_S_contig9850:2497..25811681145352.9331434-CDS-Ecto-sp8_S_contig9850:2497..2581Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9850 2498..2581 -
1681145352.943734-CDS-Ecto-sp8_S_contig9850:3532..35841681145352.943734-CDS-Ecto-sp8_S_contig9850:3532..3584Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig9850 3533..3584 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145352.953955-UTR-Ecto-sp8_S_contig9850:3584..35971681145352.953955-UTR-Ecto-sp8_S_contig9850:3584..3597Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig9850 3585..3597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig9850.31668.1prot_Ecto-sp8_S_contig9850.31668.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig9850 1380..3584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig9850.31668.1

>prot_Ecto-sp8_S_contig9850.31668.1 ID=prot_Ecto-sp8_S_contig9850.31668.1|Name=mRNA_Ecto-sp8_S_contig9850.31668.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=130bp
MDDVNASFTNNSAFANGGAIAAADGSSLTISGPISFVNNTAEGNGGAVAM
FESVIATGHGTTFTGNEANTGAGGGIYSSVSTASINGSVFTANQAVWGGG
MALFSSGSVWNVESPDDSGPANTTTCVFER
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mRNA from alignment at Ecto-sp8_S_contig9850:1380..3597-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig9850.31668.1 ID=mRNA_Ecto-sp8_S_contig9850.31668.1|Name=mRNA_Ecto-sp8_S_contig9850.31668.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2218bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9850:1380..3597- (Ectocarpus species8 EcLAC_412)
GTCGGACGTCGTCATGGATGACGTCAACGCCTCGTTCACGAACAATTCTG
CATTCGCGAACGGAGGTAAGATCTGGAATGCAAGGGGCTTGACGCTCCGC
GCTCACACGTCGGTTTTCGATTCTTGCTGCTGAAGTGGCAACAATCACGC
CCTCGACATTTGTCCTCCCCTAACCGATGTTTAACCACTACAATTCCCCT
TAAAAAATCAACTCCTATTTAGTTTCTGCTGCATTGGTTTCTCGGTGGTC
GTGAGTCACCGAGACCCCGAGGCGTTTTTCCTAAGAAAAACATTCACGTA
GTAACACCTGTAGGTCCTGAAACAATAGTCTATTATAGTCCACCAAGTTG
CAGTAGTCCAGAAACAACAGAACGCAAGGGGATTGAGCAAGGGAAGCCCC
AAACAACAGCAAAGACGCCAGTCGTCGTTGCGACGAAAAATAAAACTGAC
CAGCAAAAAATATTAGGGTACACGGTGTGCGATTGACTGCTACGACAATG
ACACATTGTCCATTCTCATGACACCCTCACACCATTGTGAAGGTTTACTA
CAGGGATGCGTCACCATTTTTAATCAAGAACCTGCTTGAAAAGATCGAAC
TCAAATACCCAGTAAAGCGTCGCTGCTGGGCTATCCTATAGGGGAAATAG
AAATCGAGCCTTGAGCAACATAAGAGGTGCTTCAGGCATCTTCTTGTAGA
TCCCTGATACCATTTTTCGCGCAACTTCTCATCGAACCTGTCAGCAAGGT
CTGTACTACAGAACAGAAATCGCCCCTCCTGGGTACACCACGCGCGACAG
ACACATGTGGTGTAATGGCAACATCTTACCTTCGATTCTCCGTACGTGTA
CTTTTCTTTTTTCGAGCAAGCTTGTTTGAGAGTCATCTTGCGAGACCCGC
TCTTGTTCCTAACCATGCACGCAGTTGTATGATTCTAAACGGCAAAGTGC
CGGTGCAGCCTTCTCGGCTTTTCTTAAATTGCCCACGCTGTTTGTCTTGC
CGGACCGCAAACGCAGGGGCCATAGCAGCGGCGGACGGCTCTTCTTTGAC
CATCAGCGGCCCAATATCGTTTGTAAATAACACAGCGGAGGGCAACGGAG
GTAAGGACTCACCCGTTGCATCGACACTGCCAAGGGGCGAGAGAGACAAA
GAGCGAGCGTGAAGAGGCGATTTTTTTTTTATCTTTTGTAGAGGTCATGA
TCCGGTGCCATGCGTTACTCCTGATATGTATGCTTCTCCGAAGAGTTATA
AGGAGAAATGTGGCGAGGGCACTGGATTGGGACGTTAGGAGCGTGAGCGG
GCACGACAATCAGTTTTGCAAATCGAAACTCTTCACCCAGACGCTGTAGT
TCGCCGGTCGGTGACGATACATAATAAATTTCATGCCATGGGCATGTTCC
AAGTATAGACTGTACATCTTTAAGCACTAACTTCTATTGCGAAATGTGTC
TCTGTCATGCCGTATGAAACTGCTCGTTCGTTCGATTGGCAAGGCGCCGT
CGCCATGTTCGAGTCGGTGATCGCAACAGGACACGGGACAACCTTCACCG
GCAACGAGGCCAATACGGGAGCAGGGGGAGGGATATATTCGTCTGTGTCT
ACTGCCTCTATCAACGGTTCAGTTTTCACGGCAAACCAGGCGGTGTGGGG
CGGAGGTCGGTGCCAGTTTATCTCTGGGAAATATACTACACATGTACAGA
AGATAGTCTGAATAGGGCCCTGATGTTTGTCTCTACGAGGGTGGCGATGA
AAAAACGAAGAACGAACTGTATTCAAAATAACCTTGGAAGATGGCAAACA
GAAGATCTACGTCTTCGTTGCTGCAAGCGCCATAATCTCCTGCAACAACA
GCAGTGAGGGATACGCCGTTACGGGTGCGAAGACGGCTAAGACAACGCCC
ATGCGTTGAAAACGGCGCGGCCGTGAATCATCGATAAAAGTGTTTGGGCG
TCCTTCGCGATCAAGATATCATGTAGCTTGTACTTGCTCGACGTAGTCGT
GACGGATTAACCAGTCGGTTTGTGAGGTTGTGTCCTCGTCAGCAGGCGTA
CCTTGGACACCACACTTAAGACGCCTACCCGGTACGCTACGTGCTTTTGT
TGGACGCTAAACAAAACGGAGATCAGGCATGGCTCTGTTTTCATCAGGCT
CGGTTTGGAATGTAGAATCTCCAGACGACTCGGGACCCGCGAACACGACC
ACGTGTGTCTTCGAACGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig9850:1380..3597-

>mRNA_Ecto-sp8_S_contig9850.31668.1 ID=mRNA_Ecto-sp8_S_contig9850.31668.1|Name=mRNA_Ecto-sp8_S_contig9850.31668.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp8_S_contig9850:1380..3597- (Ectocarpus species8 EcLAC_412)
ATGGATGACGTCAACGCCTCGTTCACGAACAATTCTGCATTCGCGAACGG
AGGGGCCATAGCAGCGGCGGACGGCTCTTCTTTGACCATCAGCGGCCCAA
TATCGTTTGTAAATAACACAGCGGAGGGCAACGGAGGCGCCGTCGCCATG
TTCGAGTCGGTGATCGCAACAGGACACGGGACAACCTTCACCGGCAACGA
GGCCAATACGGGAGCAGGGGGAGGGATATATTCGTCTGTGTCTACTGCCT
CTATCAACGGTTCAGTTTTCACGGCAAACCAGGCGGTGTGGGGCGGAGGC
ATGGCTCTGTTTTCATCAGGCTCGGTTTGGAATGTAGAATCTCCAGACGA
CTCGGGACCCGCGAACACGACCACGTGTGTCTTCGAACGG
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