prot_Ecto-sp8_S_contig96470.31335.1 (polypeptide) Ectocarpus species8 EcLAC_412

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp8_S_contig96470.31335.1
Unique Nameprot_Ecto-sp8_S_contig96470.31335.1
Typepolypeptide
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Sequence length54
Homology
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: D7FSC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC3_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.070e-25
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
Query:    4 QVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 54
            +VAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR
Sbjct:  659 KVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 709          
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: D7FSC4_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC4_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.770e-21
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0
Query:    4 QVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 54
            +VAFVQTPQRFR +L +DPLGNHA SQYDVIN GKDGIGAVSSSGQGSLWR
Sbjct:  446 KVAFVQTPQRFRKDLPDDPLGNHAASQYDVINIGKDGIGAVSSSGQGSLWR 496          
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835YSM9_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.180e-19
Identity = 42/52 (80.77%), Postives = 47/52 (90.38%), Query Frame = 0
Query:    4 QVAFVQTPQRFRM-ELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 54
            +VAFVQTPQRF+  + ++DPLGNHA  QYDVINHGKDGIGAVSSSGQGSLWR
Sbjct:  449 KVAFVQTPQRFQTNQQADDPLGNHAAVQYDVINHGKDGIGAVSSSGQGSLWR 500          
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A836CP13_9STRA (Glyco_trans_2-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP13_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.150e-18
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0
Query:    4 QVAFVQTPQRFRMEL-SNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 54
            +VAFVQTPQRF   + ++DPLGNHA  QYDVINHGKDGIGAVSSSGQGSLWR
Sbjct:  704 KVAFVQTPQRFTNNVQADDPLGNHAAVQYDVINHGKDGIGAVSSSGQGSLWR 755          
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835YHN4_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHN4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.910e-17
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0
Query:    4 QVAFVQTPQRFRMELS-NDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 54
            +VAFVQTPQRF  +   +DPLGNHA  QYDVINHGKDGIGAV SSG GSLWR
Sbjct:  416 KVAFVQTPQRFPFQKEKDDPLGNHAAMQYDVINHGKDGIGAVGSSGHGSLWR 467          
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835YVP7_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.550e-17
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    4 QVAFVQTPQRFRMELS--NDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 54
            +VAFVQTPQRF  +++  +DPLGN+A  QYD+INHGKDGIGAVSSSG GSLWR
Sbjct:  368 RVAFVQTPQRFPKDMNAEDDPLGNNAAVQYDIINHGKDGIGAVSSSGHGSLWR 420          
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835ZCE1_9STRA (Cellulose synthase, family GT2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.060e-17
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0
Query:    4 QVAFVQTPQRFRMELS--NDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 54
            +VAFVQTPQRF+ +    +DPLGNHA  QYDVIN GKDGIGAVSSSG GSLWR
Sbjct:  598 RVAFVQTPQRFKPDQMTLDDPLGNHAAVQYDVINRGKDGIGAVSSSGHGSLWR 650          
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: D8LMC3_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.400e-11
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:    5 VAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 54
            V FVQTPQRF      DPLGNHA+  + V N  KDG+G V+S GQGSLWR
Sbjct: 1178 VGFVQTPQRFEDLGDGDPLGNHAVLTFFVSNVSKDGVGGVTSCGQGSLWR 1227          
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835Z722_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z722_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.980e-10
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0
Query:    4 QVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 54
            +V FVQTPQRF+ +   DPL N    ++++ N GKDG GAV+S GQGS+WR
Sbjct:  444 KVCFVQTPQRFKDDGIGDPLANWGTVKFNITNIGKDGAGAVTSCGQGSVWR 494          
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Match: A0A835Z7S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S9_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.870e-9
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0
Query:    4 QVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQGSLWR 54
            +V FVQTPQRF+ +   +PL N    ++++ N GKDG GAV+S GQG++WR
Sbjct:  624 KVCFVQTPQRFKDDGIGNPLANWGAVKFNITNVGKDGAGAVTSCGQGAVWR 674          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig96470.31335.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FSC3_ECTSI1.070e-2598.04Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
D7FSC4_ECTSI5.770e-2186.27Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
A0A835YSM9_9STRA6.180e-1980.77Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A836CP13_9STRA1.150e-1880.77Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A835YHN4_9STRA1.910e-1776.92Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835YVP7_9STRA3.550e-1773.58Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
A0A835ZCE1_9STRA9.060e-1775.47Cellulose synthase, family GT2 n=1 Tax=Tribonema m... [more]
D8LMC3_ECTSI2.400e-1162.00Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
A0A835Z722_9STRA3.980e-1054.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7S9_9STRA4.870e-950.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029044Nucleotide-diphospho-sugar transferasesGENE3D3.90.550.10coord: 1..54
e-value: 3.0E-5
score: 25.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig96470contigEcto-sp8_S_contig96470:2..163 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig96470.31335.1mRNA_Ecto-sp8_S_contig96470.31335.1Ectocarpus species8 EcLAC_412mRNAEcto-sp8_S_contig96470 2..163 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp8_S_contig96470.31335.1 ID=prot_Ecto-sp8_S_contig96470.31335.1|Name=mRNA_Ecto-sp8_S_contig96470.31335.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
RSFQVAFVQTPQRFRMELSNDPLGNHAISQYDVINHGKDGIGAVSSSGQG
SLWR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans